Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UVF	42618	2025-05-11	2023-11-02	2.17	2.37	2.19	2.5	0.005	0.68	2.0	0.05	15.06	0.01	2.198	8.72	0.47	0.8	99.2	0.0	2.18	0.65	0.84	3.77	2.5	0.003	0.57	0.0	0.04	15.02	0.01	2.246	7.30	1.40	0.8	99.2	0.0	2.35	0.95	0.64	0.86	3.73	8520	1026	4	0	22	0	0	logfile
✔	8R1Z	18829	2025-05-10	2023-11-02	3.2	4.64	3.31	4.0	0.003	0.49	0.0	0.04	14.16	0.00	2.292	11.44	0.18	5.2	94.8	0.0	-0.23	0.88	0.78	1.69	4.0	0.002	0.59	0.0	0.04	15.20	0.00	2.279	6.70	1.26	4.6	95.4	0.0	-0.26	1.09	0.89	0.79	1.45	5028	658	4	0	2	0	0	logfile
✔	8WZE	37950	2025-05-09	2023-11-02	3.32	3.49	3.24	3.5	0.005	0.75	0.0	0.05	15.54	0.01	2.186	5.72	0.78	4.0	95.8	0.2	-2.32	0.44	0.73	2.69	3.5	0.003	0.59	0.0	0.04	16.58	0.00	2.099	6.60	3.63	4.7	95.3	0.0	-1.22	0.40	0.57	0.82	2.68	3400	435	3	0	0	0	0	logfile
✔	8UVC	42615	2025-05-11	2023-11-02	2.09	2.64	2.05	2.5	0.005	0.73	2.0	0.05	14.95	0.01	2.262	7.73	0.47	0.5	99.5	0.0	2.48	0.65	0.88	3.59	2.5	0.003	0.56	0.0	0.04	14.38	0.00	2.282	6.38	0.81	1.0	99.0	0.0	2.93	0.90	0.67	0.91	3.81	8558	1026	4	0	22	0	0	logfile
✔	8WZX	37963	2025-05-11	2023-11-02	2.88	2.79	2.63	3.0	0.009	0.97	0.0	0.06	10.36	0.00	2.604	10.76	0.00	2.0	98.0	0.0	-4.13	0.54	0.86	6.58	3.0	0.006	1.11	1.0	0.05	15.29	0.01	2.408	11.11	2.43	3.2	96.7	0.1	-4.36	0.41	0.53	0.89	5.70	7300	1020	20	0	0	0	0	logfile
✔	8UUX	42600	2025-05-14	2023-11-02	2.74	2.87	2.61	2.9	0.002	0.63	0.0	0.05	15.62	0.01	2.133	3.59	0.95	5.7	94.2	0.1	-1.63	0.41	0.85	3.94	2.9	0.003	0.64	0.0	0.05	16.33	0.01	2.370	2.74	2.05	5.9	94.0	0.1	-1.00	0.24	0.42	0.85	3.59	12084	1532	9	0	3	310	0	logfile
✔	8R22	18833	2025-05-16	2023-11-02	3.9	3.57	3.81	3.6	0.005	0.67	0.0	0.04	14.65	0.01	2.098	10.00	0.00	9.3	90.7	0.0	-4.23	0.79	0.79	1.68	3.7	0.003	0.64	0.0	0.04	16.28	0.00	2.050	6.86	2.29	6.4	93.6	0.0	-0.62	0.51	0.78	0.78	1.14	15069	1950	5	0	1	0	0	logfile
✔	8R23	18834	2025-05-14	2023-11-02	3.2	3.07	3.25	3.2	0.006	0.66	0.0	0.04	14.39	0.01	1.978	6.96	0.00	6.6	93.4	0.0	-5.33	0.80	0.83	2.57	3.2	0.002	0.59	0.0	0.04	16.09	0.00	2.096	4.92	1.51	3.6	96.4	0.0	0.00	0.44	0.80	0.83	1.20	11979	1548	4	0	2	0	0	logfile
✔	8UUZ	42602	2025-05-09	2023-11-02	3.77	4.50	3.76	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.8	0.004	0.86	0.0	0.05	16.44	0.00	2.571	27.43	4.78	5.6	94.4	0.0	-2.39	1.28	0.76	0.59	1.07	2258	300	2	0	0	0	0	logfile
✔	8X01	37964	2025-05-16	2023-11-02	3.01	3.35	—	3.3	0.005	0.75	1.0	0.05	15.84	0.01	2.259	11.44	0.49	1.8	98.2	0.0	1.10	0.71	0.84	2.54	3.3	0.004	0.74	0.0	0.04	16.43	0.00	2.472	10.23	2.51	2.4	97.6	0.0	1.18	0.86	0.67	0.83	2.69	12742	1608	6	0	2	0	0	logfile
✔	8UVE	42617	2025-05-11	2023-11-02	2.6	3.11	2.70	3.0	0.004	0.62	0.0	0.04	14.48	0.01	2.230	9.16	0.00	1.5	98.5	0.0	2.23	0.58	0.83	2.45	3.0	0.003	0.58	0.0	0.04	14.55	0.01	2.251	8.01	1.65	1.5	98.5	0.0	2.71	0.35	0.53	0.80	2.30	8373	1010	4	0	22	0	0	logfile
✘	8R1U	18828	2025-05-10	2023-11-02	3.19	4.38	3.25	3.9	0.002	0.46	0.0	0.04	14.26	0.00	2.230	5.04	0.00	4.9	95.1	0.0	-0.79	0.88	0.82	1.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5032	658	4	0	2	0	0	logfile
✔	8UVH	42620	2025-05-10	2023-11-02	2.33	2.52	2.23	2.7	0.004	0.64	0.0	0.04	11.90	0.01	2.255	9.55	0.26	1.1	98.9	0.0	2.35	0.56	0.76	3.21	2.7	0.003	0.60	0.0	0.04	14.72	0.01	2.581	9.69	0.51	1.2	98.8	0.0	2.43	0.38	0.55	0.78	3.00	7158	918	2	0	0	0	0	logfile
✔	8UV3	42604	2025-05-14	2023-11-02	2.72	2.82	2.64	2.8	0.010	1.06	0.0	0.06	14.69	0.01	1.851	5.72	0.39	8.0	91.8	0.2	-3.67	0.38	0.84	3.98	2.8	0.006	0.84	0.0	0.05	16.19	0.01	1.877	3.20	1.73	6.0	93.9	0.1	-1.72	0.37	0.38	0.77	3.57	12069	1534	9	0	3	276	0	logfile
✔	8WZi	37953	2025-05-24	2023-11-01	3.0	3.43	3.02	3.2	0.013	1.57	1.0	0.08	15.51	0.01	2.202	7.57	3.25	4.0	95.9	0.1	-0.80	0.79	0.79	2.21	3.2	0.003	0.67	0.0	0.04	14.95	0.00	2.463	7.82	2.13	3.8	96.2	0.0	-0.62	0.34	0.79	0.81	2.02	24971	3078	27	0	69	0	0	logfile
✔	8WZ3	37945	2025-05-17	2023-11-01	3.19	3.41	3.20	3.4	0.004	0.61	0.0	0.05	17.00	0.00	2.025	6.12	0.17	6.0	94.0	0.0	-4.35	0.76	0.82	2.98	3.4	0.004	0.65	0.0	0.04	16.06	0.00	2.551	4.80	2.56	6.2	93.8	0.0	-1.39	0.40	0.74	0.84	3.09	15741	2016	12	0	3	0	0	logfile
✔	8UUo	42592	2025-05-24	2023-11-01	3.9	4.75	4.07	4.0	0.008	1.10	0.0	0.06	15.13	0.01	2.155	6.64	0.11	5.0	95.0	0.0	-1.81	0.87	0.85	1.54	4.0	0.002	0.60	0.0	0.04	14.57	0.00	2.482	7.50	0.89	3.6	96.4	0.0	-0.41	0.98	0.87	0.85	1.38	25465	3218	9	0	22	0	0	logfile
✔	8WZK	37955	2025-05-18	2023-11-01	2.4	2.26	2.40	2.4	0.016	1.80	0.0	0.08	14.60	0.01	2.379	2.54	1.87	3.8	96.0	0.2	-1.19	0.51	0.67	5.64	2.4	0.004	0.71	0.0	0.05	16.03	0.00	2.532	5.83	2.28	3.3	96.7	0.0	0.53	1.19	0.71	0.81	4.30	16368	1988	8	0	8	0	0	logfile
✔	8WZ2	37944	2025-05-12	2023-11-01	2.73	3.66	2.89	3.4	0.004	0.58	0.0	0.08	7.42	0.00	2.029	4.69	0.10	1.0	99.0	0.0	-1.03	0.72	0.78	3.28	3.4	0.003	0.77	0.0	0.04	15.56	0.00	2.451	9.00	2.40	2.5	97.5	0.0	0.67	4.13	0.70	0.85	2.80	9355	1202	6	0	0	0	0	logfile
✔	8UUM	42590	2025-05-25	2023-11-01	3.9	4.70	4.04	4.0	0.008	1.05	0.0	0.06	14.96	0.01	2.241	5.42	0.14	5.4	94.6	0.0	-1.71	0.88	0.86	1.69	4.1	0.002	0.57	0.0	0.04	14.37	0.00	2.453	6.60	0.95	3.2	96.8	0.0	-0.23	0.36	0.87	0.85	1.39	25786	3247	10	0	30	0	0	logfile

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