Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WZ2	37944	2025-05-12	2023-11-01	2.73	3.66	2.89	3.4	0.004	0.58	0.0	0.08	7.42	0.00	2.029	4.69	0.10	1.0	99.0	0.0	-1.03	0.72	0.78	3.28	3.4	0.003	0.77	0.0	0.04	15.56	0.00	2.451	9.00	2.40	2.5	97.5	0.0	0.67	4.13	0.70	0.85	2.80	9355	1202	6	0	0	0	0	logfile
✔	8WZ4	37946	2025-05-09	2023-11-01	3.13	3.33	3.14	3.4	0.011	0.95	0.0	0.06	13.98	0.00	2.114	3.62	0.26	8.6	91.4	0.0	-4.05	0.68	0.79	3.83	3.4	0.004	0.65	0.0	0.04	16.80	0.00	2.438	5.21	5.15	5.3	94.7	0.0	-0.48	1.75	0.68	0.84	3.48	3441	439	3	0	0	0	0	logfile
✔	8R1D	18808	2025-05-27	2023-11-01	2.37	2.35	2.20	2.4	0.008	0.88	0.0	0.05	14.94	0.01	2.112	5.41	1.11	2.9	97.1	0.0	-0.07	0.70	0.86	5.08	2.4	0.003	0.58	0.0	0.05	15.24	0.00	2.412	3.56	2.46	2.9	97.1	0.0	0.25	0.23	0.72	0.89	4.91	30493	3876	18	0	30	43	0	logfile
✔	8R1G	18810	2025-05-30	2023-11-01	3.99	4.21	4.01	4.0	0.006	0.94	0.0	0.06	11.49	0.01	1.603	1.35	0.27	2.2	97.8	0.0	-0.72	0.69	0.55	0.61	4.1	0.003	0.62	0.0	0.04	15.17	0.00	2.269	6.35	1.22	3.7	96.3	0.0	0.75	1.36	0.75	0.66	0.73	33258	2050	10	0	6	0	16526	logfile
✔	8UUN	42591	2025-05-25	2023-11-01	3.8	4.47	3.85	3.9	0.009	1.07	0.0	0.06	14.54	0.01	2.262	4.45	0.00	4.9	95.1	0.0	-1.78	0.87	0.86	2.02	3.9	0.002	0.58	0.0	0.04	14.31	0.00	2.380	5.18	0.67	3.8	96.2	0.0	-0.51	0.96	0.87	0.85	1.65	25829	3254	11	0	29	0	0	logfile
✔	8UUK	42588	2025-05-13	2023-11-01	2.5	3.07	2.51	2.9	0.004	0.67	0.0	0.05	21.91	0.00	2.180	11.02	1.53	4.4	95.6	0.0	1.07	0.59	0.84	3.54	3.0	0.003	0.60	0.0	0.04	16.11	0.00	2.556	10.08	2.49	5.1	94.7	0.2	1.39	0.33	0.58	0.83	3.04	10242	1226	4	0	30	0	0	logfile
✔	8UUL	42589	2025-05-25	2023-11-01	3.2	4.04	3.30	3.7	0.009	1.06	0.0	0.07	14.63	0.01	2.247	3.74	0.04	5.0	95.0	0.0	-1.96	0.86	0.85	2.90	3.7	0.004	0.61	0.0	0.04	14.09	0.00	2.461	4.30	0.67	4.5	95.5	0.0	-0.40	0.35	0.85	0.84	2.21	25891	3254	13	0	33	0	0	logfile
✔	8WZ5	37947	2025-05-17	2023-11-01	3.51	3.76	3.47	3.8	0.006	1.06	3.0	0.05	15.77	0.01	1.637	7.38	0.83	4.8	95.2	0.0	-1.34	0.62	0.70	1.30	3.7	0.005	0.75	1.0	0.04	17.44	0.00	2.336	10.11	3.84	5.7	94.3	0.0	-1.39	1.00	0.71	0.76	1.46	15645	2013	9	0	0	0	0	logfile
✔	8UUE	42580	2025-05-12	2023-11-01	3.96	4.16	3.95	4.1	0.011	1.34	3.0	0.05	18.95	0.01	2.131	16.88	1.45	10.8	88.3	1.0	-2.50	0.79	0.81	1.60	4.1	0.004	0.75	0.0	0.04	18.91	0.01	2.435	9.43	4.96	10.4	88.7	0.9	-1.89	0.94	0.79	0.81	1.48	8984	1150	4	0	0	0	0	logfile
✔	8WZK	37955	2025-05-18	2023-11-01	2.4	2.26	2.40	2.4	0.016	1.80	0.0	0.08	14.60	0.01	2.379	2.54	1.87	3.8	96.0	0.2	-1.19	0.51	0.67	5.64	2.4	0.004	0.71	0.0	0.05	16.03	0.00	2.532	5.83	2.28	3.3	96.7	0.0	0.53	1.19	0.71	0.81	4.30	16368	1988	8	0	8	0	0	logfile
✔	8WZ3	37945	2025-05-17	2023-11-01	3.19	3.41	3.20	3.4	0.004	0.61	0.0	0.05	17.00	0.00	2.025	6.12	0.17	6.0	94.0	0.0	-4.35	0.76	0.82	2.98	3.4	0.004	0.65	0.0	0.04	16.06	0.00	2.551	4.80	2.56	6.2	93.8	0.0	-1.39	0.40	0.74	0.84	3.09	15741	2016	12	0	3	0	0	logfile
✔	8WZi	37953	2025-05-24	2023-11-01	3.0	3.43	3.02	3.2	0.013	1.57	1.0	0.08	15.51	0.01	2.202	7.57	3.25	4.0	95.9	0.1	-0.80	0.79	0.79	2.21	3.2	0.003	0.67	0.0	0.04	14.95	0.00	2.463	7.82	2.13	3.8	96.2	0.0	-0.62	0.34	0.79	0.81	2.02	24971	3078	27	0	69	0	0	logfile
✘	8R1F	18809	2025-05-18	2023-11-01	3.67	3.92	3.69	3.9	0.008	1.00	0.0	0.07	11.49	0.02	2.496	0.36	0.21	2.3	97.7	0.0	-0.70	0.58	0.53	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16629	1025	5	0	3	0	8263	logfile
✘	8UTU	42550	2025-05-15	2023-10-31	3.0	2.25	2.97	2.2	0.006	0.97	1.0	0.05	18.78	0.01	1.969	5.30	1.50	3.7	96.1	0.2	-0.42	0.57	0.83	3.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13615	1709	9	1	7	0	0	logfile
✔	8UTN	42543	2025-05-23	2023-10-31	3.1	2.25	3.06	2.2	0.006	0.89	2.0	0.05	18.88	0.01	1.920	5.11	1.64	3.7	95.5	0.8	-0.26	0.63	0.82	3.47	2.2	0.003	0.61	0.0	0.04	17.17	0.00	1.909	5.19	3.05	3.8	96.2	0.1	0.66	0.95	0.63	0.83	3.28	23784	2981	16	2	11	0	0	logfile
✔	8UTP	42545	2025-05-23	2023-10-31	3.2	2.45	3.19	3.3	0.005	0.85	1.0	0.05	18.53	0.01	1.930	4.23	0.94	4.2	95.4	0.4	-0.04	0.65	0.85	3.10	3.3	0.006	0.66	0.0	0.05	17.29	0.00	1.873	4.85	2.54	4.1	95.8	0.1	0.80	1.73	0.65	0.86	2.89	23792	2982	16	2	11	0	0	logfile
✔	8WYi	37929	2025-05-10	2023-10-31	3.9	4.16	3.85	4.1	0.004	1.07	0.0	0.04	18.20	0.01	2.068	17.74	1.91	11.2	87.2	1.6	-1.04	0.49	0.67	0.70	4.1	0.004	0.89	0.0	0.04	18.84	0.00	2.351	10.58	6.12	12.6	86.5	0.9	-0.25	1.25	0.62	0.77	0.93	4659	589	8	0	0	0	0	logfile
✔	8UTM	42542	2025-05-16	2023-10-31	4.32	3.34	4.34	2.0	0.009	1.55	9.0	0.09	7.59	0.01	2.603	0.05	0.00	2.7	97.3	0.0	-1.95	0.75	0.74	—	2.2	0.003	0.55	0.0	0.04	4.07	0.00	2.422	0.91	0.00	3.4	96.6	0.0	1.53	1.79	0.78	0.77	—	14176	2856	8	0	0	0	0	logfile
✔	8WYX	37940	2025-05-12	2023-10-31	3.5	3.89	3.48	3.4	0.007	0.57	0.0	0.04	13.61	0.00	2.029	10.00	0.20	3.2	96.8	0.0	-0.06	0.75	0.62	0.72	3.6	0.004	0.77	1.0	0.04	16.57	0.00	2.026	14.78	4.15	4.6	95.4	0.0	-0.55	1.56	0.79	0.68	1.11	8809	1070	2	0	1	0	0	logfile
✔	8WYR	37936	2025-05-21	2023-10-31	3.39	3.86	3.59	3.8	0.008	1.08	1.0	0.07	15.72	0.01	2.250	8.31	1.24	6.8	93.2	0.0	-2.76	0.71	0.78	1.76	3.8	0.006	0.78	0.0	0.05	16.05	0.01	2.131	14.76	3.20	7.1	92.9	0.0	-1.90	0.42	0.77	0.83	1.82	20612	2629	24	0	14	0	0	logfile

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