Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UTF	42539	2025-05-13	2023-10-31	2.73	2.99	2.86	2.9	0.003	0.46	0.0	0.04	16.15	0.00	2.222	3.02	0.00	1.5	98.5	0.0	0.28	0.69	0.81	3.67	2.9	0.004	0.58	0.0	0.04	16.08	0.00	2.557	3.53	1.68	1.5	98.5	0.0	1.50	1.47	0.77	0.86	2.90	9827	1248	15	0	9	134	0	logfile
✔	8UTo	42544	2025-05-23	2023-10-31	3.2	2.44	3.17	3.3	0.005	0.81	0.0	0.05	18.60	0.01	1.940	3.67	0.59	3.8	95.9	0.3	-0.12	0.64	0.84	3.00	3.3	0.003	0.61	0.0	0.04	17.19	0.00	1.913	5.23	2.22	3.4	96.4	0.2	0.70	0.94	0.65	0.86	2.69	23792	2982	16	2	11	0	0	logfile
✔	8WYS	37937	2025-05-10	2023-10-31	3.41	3.65	3.43	3.6	0.005	0.92	0.0	0.06	17.49	0.01	2.025	6.74	0.98	7.0	93.0	0.0	-3.17	0.56	0.77	0.84	3.7	0.003	0.66	0.0	0.05	17.46	0.00	2.292	10.19	4.34	7.0	93.0	0.0	-1.91	0.94	0.55	0.79	1.47	6340	805	8	0	6	0	0	logfile
✔	8WYX	37940	2025-05-12	2023-10-31	3.5	3.89	3.48	3.4	0.007	0.57	0.0	0.04	13.61	0.00	2.029	10.00	0.20	3.2	96.8	0.0	-0.06	0.75	0.62	0.72	3.6	0.004	0.77	1.0	0.04	16.57	0.00	2.026	14.78	4.15	4.6	95.4	0.0	-0.55	1.56	0.79	0.68	1.11	8809	1070	2	0	1	0	0	logfile
✔	8UTT	42549	2025-05-23	2023-10-31	3.1	2.46	3.18	3.3	0.007	0.96	0.0	0.06	19.18	0.01	1.190	6.78	1.60	5.3	94.3	0.4	-0.45	0.60	0.84	2.90	3.3	0.003	0.64	0.0	0.04	17.20	0.01	1.949	5.37	2.07	3.9	96.0	0.1	1.05	0.55	0.60	0.85	2.40	23744	2974	16	2	11	0	0	logfile
✔	8UTP	42545	2025-05-23	2023-10-31	3.2	2.45	3.19	3.3	0.005	0.85	1.0	0.05	18.53	0.01	1.930	4.23	0.94	4.2	95.4	0.4	-0.04	0.65	0.85	3.10	3.3	0.006	0.66	0.0	0.05	17.29	0.00	1.873	4.85	2.54	4.1	95.8	0.1	0.80	1.73	0.65	0.86	2.89	23792	2982	16	2	11	0	0	logfile
✔	8UTQ	42546	2025-05-18	2023-10-31	3.1	3.03	3.11	3.4	0.005	0.81	0.0	0.05	18.60	0.01	1.891	3.87	0.22	4.1	95.8	0.1	0.10	0.67	0.86	3.21	3.4	0.005	0.66	0.0	0.05	16.36	0.00	1.830	5.74	1.60	3.8	96.2	0.0	0.87	0.94	0.67	0.89	2.97	16825	2110	12	2	8	0	0	logfile
✔	8UTY	42553	2025-05-23	2023-10-31	3.3	2.75	3.27	3.5	0.006	0.88	0.0	0.05	18.43	0.01	1.941	5.20	1.45	4.4	94.8	0.8	-0.11	0.56	0.83	2.61	3.4	0.004	0.78	1.0	0.04	16.57	0.00	1.912	7.48	2.27	3.2	96.7	0.1	0.98	1.38	0.57	0.84	2.33	23765	2979	16	2	11	0	0	logfile
✔	8WYR	37936	2025-05-21	2023-10-31	3.39	3.86	3.59	3.8	0.008	1.08	1.0	0.07	15.72	0.01	2.250	8.31	1.24	6.8	93.2	0.0	-2.76	0.71	0.78	1.76	3.8	0.006	0.78	0.0	0.05	16.05	0.01	2.131	14.76	3.20	7.1	92.9	0.0	-1.90	0.42	0.77	0.83	1.82	20612	2629	24	0	14	0	0	logfile
✔	8UTR	42547	2025-05-13	2023-10-31	3.3	2.47	3.29	3.4	0.004	0.78	0.0	0.05	18.17	0.01	1.777	3.27	0.66	4.2	95.6	0.2	0.03	0.59	0.84	3.09	3.4	0.003	0.63	0.0	0.04	17.19	0.00	1.977	5.24	1.80	3.8	96.2	0.0	0.73	0.47	0.60	0.85	2.77	9792	1230	7	1	4	0	0	logfile
✔	8WYi	37929	2025-05-10	2023-10-31	3.9	4.16	3.85	4.1	0.004	1.07	0.0	0.04	18.20	0.01	2.068	17.74	1.91	11.2	87.2	1.6	-1.04	0.49	0.67	0.70	4.1	0.004	0.89	0.0	0.04	18.84	0.00	2.351	10.58	6.12	12.6	86.5	0.9	-0.25	1.25	0.62	0.77	0.93	4659	589	8	0	0	0	0	logfile
✔	8UT8	42533	2025-05-15	2023-10-30	3.2	3.53	3.39	3.5	0.007	1.16	0.0	0.06	13.81	0.01	2.087	3.28	0.00	3.0	97.0	0.0	0.10	0.66	0.76	2.65	3.6	0.004	0.71	0.0	0.04	15.65	0.00	2.483	9.81	2.04	4.1	95.9	0.0	-0.68	0.59	0.68	0.78	2.50	12707	1450	17	0	249	0	0	logfile
✔	8UT6	42531	2025-05-15	2023-10-30	2.8	3.01	2.85	3.0	0.006	0.96	0.0	0.05	13.95	0.01	2.085	2.86	0.00	2.0	98.0	0.0	0.42	0.60	0.79	4.37	3.0	0.004	0.67	0.0	0.04	15.13	0.00	2.450	7.06	1.57	4.2	95.8	0.0	-0.38	1.10	0.62	0.81	4.41	13046	1460	11	0	257	0	0	logfile
✔	8USX	42522	2025-05-19	2023-10-30	4.1	4.33	4.14	4.1	0.003	0.62	0.0	0.04	11.31	0.00	2.167	9.14	0.21	6.8	92.6	0.5	0.07	0.65	0.63	—	4.1	0.007	0.76	0.0	0.05	11.37	0.01	2.432	9.17	0.00	8.7	90.8	0.5	-0.02	0.93	0.67	0.67	—	17926	2967	4	0	0	0	0	logfile
✔	8USZ	42524	2025-05-21	2023-10-30	2.98	3.24	3.07	3.2	0.004	0.79	1.0	0.05	16.22	0.01	1.942	3.93	1.90	5.2	94.8	0.0	-2.24	0.70	0.78	3.00	3.2	0.003	0.60	0.0	0.04	15.38	0.00	2.263	4.73	2.21	4.8	95.2	0.0	-1.06	0.40	0.70	0.83	2.66	21179	2758	9	0	25	0	0	logfile
✔	8WYC	37923	2025-05-22	2023-10-30	3.0	3.25	3.03	3.3	0.005	0.81	0.0	0.04	20.08	0.00	1.861	38.58	6.67	2.9	97.1	0.0	0.84	0.72	0.85	2.66	3.3	0.004	0.63	0.0	0.04	18.84	0.00	2.388	10.39	4.50	3.2	96.8	0.0	-0.01	0.92	0.72	0.87	2.69	22385	2680	10	0	4	0	0	logfile
✔	8WY4	37915	2025-05-16	2023-10-30	2.81	2.99	2.89	3.0	0.006	1.06	0.0	0.06	15.32	0.01	2.368	2.51	0.00	4.3	95.7	0.0	-3.49	0.69	0.76	2.56	3.0	0.005	0.74	0.0	0.05	17.65	0.00	2.472	4.59	2.84	6.5	93.5	0.0	0.19	0.49	0.69	0.79	2.55	14864	1804	8	0	4	0	0	logfile
✔	8WY5	37916	2025-05-17	2023-10-30	3.12	3.34	3.16	3.4	0.006	1.18	1.0	0.07	18.38	0.01	2.380	2.95	0.18	5.0	94.5	0.5	-4.06	0.61	0.72	1.90	3.4	0.004	0.70	0.0	0.05	19.62	0.00	2.342	8.87	1.90	6.6	93.0	0.3	-1.12	1.04	0.64	0.76	1.95	16038	1770	12	76	4	0	0	logfile
✔	8WY0	37914	2025-05-10	2023-10-30	3.8	4.17	3.77	4.1	0.004	0.78	0.0	0.04	17.42	0.00	2.142	14.51	1.16	7.9	92.1	0.0	-1.58	0.50	0.67	1.59	4.1	0.003	0.84	0.0	0.04	17.67	0.00	2.488	10.14	6.56	7.2	92.8	0.0	-0.64	0.69	0.61	0.76	1.28	4656	587	9	0	1	0	0	logfile
✔	8WXL	37910	2025-05-24	2023-10-30	2.59	3.13	2.59	3.0	0.005	0.63	0.0	0.05	13.06	0.00	1.858	4.79	0.00	5.1	94.9	0.0	-0.06	0.83	0.87	3.30	3.0	0.004	0.66	0.0	0.05	14.02	0.00	2.375	2.94	1.06	4.9	95.1	0.0	-0.07	0.41	0.81	0.86	3.01	25179	3120	12	0	51	0	0	logfile

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