Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UT6	42531	2025-05-15	2023-10-30	2.8	3.01	2.85	3.0	0.006	0.96	0.0	0.05	13.95	0.01	2.085	2.86	0.00	2.0	98.0	0.0	0.42	0.60	0.79	4.37	3.0	0.004	0.67	0.0	0.04	15.13	0.00	2.450	7.06	1.57	4.2	95.8	0.0	-0.38	1.10	0.62	0.81	4.41	13046	1460	11	0	257	0	0	logfile
✔	8WY0	37914	2025-05-10	2023-10-30	3.8	4.17	3.77	4.1	0.004	0.78	0.0	0.04	17.42	0.00	2.142	14.51	1.16	7.9	92.1	0.0	-1.58	0.50	0.67	1.59	4.1	0.003	0.84	0.0	0.04	17.67	0.00	2.488	10.14	6.56	7.2	92.8	0.0	-0.64	0.69	0.61	0.76	1.28	4656	587	9	0	1	0	0	logfile
✔	8UT9	42534	2025-05-15	2023-10-30	3.3	3.58	3.40	3.6	0.007	1.19	0.0	0.06	14.13	0.01	1.682	5.53	0.00	3.0	97.0	0.0	0.24	0.66	0.77	2.80	3.6	0.006	0.89	1.0	0.04	15.28	0.00	2.231	8.73	2.28	3.5	96.5	0.0	-0.22	0.45	0.67	0.79	2.34	12707	1450	17	0	249	0	0	logfile
✔	8UT7	42532	2025-05-15	2023-10-30	2.7	2.95	2.76	2.9	0.012	1.21	0.0	0.06	12.34	0.01	2.173	2.54	0.00	1.9	98.1	0.0	0.80	0.64	0.84	5.63	2.9	0.007	0.73	0.0	0.05	14.38	0.00	2.387	5.36	1.80	3.1	96.9	0.0	-0.22	0.82	0.68	0.87	5.03	13046	1460	11	0	257	0	0	logfile
✔	8UT8	42533	2025-05-15	2023-10-30	3.2	3.53	3.39	3.5	0.007	1.16	0.0	0.06	13.81	0.01	2.087	3.28	0.00	3.0	97.0	0.0	0.10	0.66	0.76	2.65	3.6	0.004	0.71	0.0	0.04	15.65	0.00	2.483	9.81	2.04	4.1	95.9	0.0	-0.68	0.59	0.68	0.78	2.50	12707	1450	17	0	249	0	0	logfile
✔	8USZ	42524	2025-05-21	2023-10-30	2.98	3.24	3.07	3.2	0.004	0.79	1.0	0.05	16.22	0.01	1.942	3.93	1.90	5.2	94.8	0.0	-2.24	0.70	0.78	3.00	3.2	0.003	0.60	0.0	0.04	15.38	0.00	2.263	4.73	2.21	4.8	95.2	0.0	-1.06	0.40	0.70	0.83	2.66	21179	2758	9	0	25	0	0	logfile
✔	8USX	42522	2025-05-19	2023-10-30	4.1	4.33	4.14	4.1	0.003	0.62	0.0	0.04	11.31	0.00	2.167	9.14	0.21	6.8	92.6	0.5	0.07	0.65	0.63	—	4.1	0.007	0.76	0.0	0.05	11.37	0.01	2.432	9.17	0.00	8.7	90.8	0.5	-0.02	0.93	0.67	0.67	—	17926	2967	4	0	0	0	0	logfile
✔	8WY4	37915	2025-05-16	2023-10-30	2.81	2.99	2.89	3.0	0.006	1.06	0.0	0.06	15.32	0.01	2.368	2.51	0.00	4.3	95.7	0.0	-3.49	0.69	0.76	2.56	3.0	0.005	0.74	0.0	0.05	17.65	0.00	2.472	4.59	2.84	6.5	93.5	0.0	0.19	0.49	0.69	0.79	2.55	14864	1804	8	0	4	0	0	logfile
✔	8WXF	37905	2025-05-18	2023-10-29	4.0	4.27	4.10	4.2	0.003	0.71	0.0	0.05	17.29	0.01	2.188	15.21	0.75	4.8	95.1	0.1	-1.25	0.74	0.80	—	4.2	0.003	0.66	0.0	0.04	17.56	0.00	2.407	11.21	3.29	4.2	95.7	0.1	-0.52	0.98	0.78	0.82	—	16380	2190	3	0	0	0	0	logfile
✔	8QZP	18779	2025-05-24	2023-10-28	4.15	4.36	4.20	4.2	0.005	0.80	0.0	0.04	14.08	0.01	2.205	22.06	1.23	8.0	91.4	0.6	-1.51	0.78	0.75	—	4.2	0.004	0.75	0.0	0.04	13.74	0.01	2.362	16.44	0.04	7.9	92.0	0.1	-0.95	0.45	0.78	0.75	—	25393	3273	8	0	0	0	0	logfile
✔	8WXE	37904	2025-05-10	2023-10-28	4.0	4.62	3.89	4.5	0.004	0.87	0.0	0.04	18.18	0.01	2.178	19.10	2.04	6.0	94.0	0.0	-0.75	0.55	0.72	—	4.5	0.005	0.93	0.0	0.05	18.38	0.00	2.479	14.13	8.55	5.2	94.8	0.0	-0.48	0.93	0.57	0.74	—	4388	548	9	0	1	0	0	logfile
✔	8WX0	37896	2025-05-15	2023-10-27	3.7	3.44	3.68	3.6	0.003	0.58	0.0	0.05	18.73	0.00	2.207	10.32	0.57	4.5	95.3	0.2	0.35	0.65	0.82	2.04	3.6	0.003	0.60	0.0	0.04	18.83	0.00	2.475	7.44	5.26	4.2	95.7	0.2	0.34	0.24	0.68	0.82	1.76	13672	1782	7	15	0	0	0	logfile
✔	8WX2	37898	2025-05-10	2023-10-27	3.44	3.85	3.43	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.171	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.004	0.83	0.0	0.05	16.66	0.01	2.543	11.44	3.42	8.3	91.7	0.0	0.82	0.65	0.59	0.74	0.53	6800	880	2	0	0	0	0	logfile
✔	8WX1	37897	2025-05-09	2023-10-27	3.64	3.87	3.66	3.9	0.003	0.74	0.0	0.04	13.80	0.00	2.297	9.47	0.00	4.7	94.9	0.4	0.07	0.51	0.72	0.89	3.9	0.003	0.71	0.0	0.04	16.73	0.01	2.479	11.75	2.87	6.3	93.7	0.0	2.36	0.69	0.54	0.76	1.54	3926	500	1	0	0	0	0	logfile
✔	8WX4	37900	2025-05-11	2023-10-27	3.12	3.35	3.11	3.4	0.004	0.71	0.0	0.04	14.16	0.00	2.031	4.66	1.53	3.5	96.5	0.0	-1.64	0.60	0.80	1.59	3.4	0.002	0.53	0.0	0.04	15.20	0.00	2.582	4.66	1.79	2.5	97.5	0.0	1.53	1.31	0.56	0.81	2.05	7512	976	6	0	0	0	0	logfile
✔	8QZM	18778	2025-05-14	2023-10-27	3.1	3.83	3.12	3.4	0.004	0.60	0.0	0.05	28.22	0.00	2.257	5.84	0.31	1.3	98.7	0.0	1.83	0.91	0.88	2.08	3.4	0.004	0.58	0.0	0.03	27.93	0.00	2.431	6.39	2.02	1.8	98.2	0.0	2.83	0.37	0.91	0.89	1.82	12141	783	11	290	0	0	0	logfile
✔	8WX5	37901	2025-05-09	2023-10-27	3.91	4.09	3.83	4.0	0.004	0.87	0.0	0.04	14.58	0.00	2.184	14.86	0.50	6.6	93.0	0.4	-1.72	0.50	0.78	1.63	4.0	0.004	0.76	0.0	0.04	16.92	0.00	2.537	12.94	3.74	6.0	94.0	0.0	0.79	1.01	0.51	0.80	0.60	3857	504	2	0	0	0	0	logfile
✔	8WX3	37899	2025-05-11	2023-10-27	2.83	2.64	2.77	2.8	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.002	0.58	0.0	0.04	15.13	0.00	2.602	5.93	2.43	2.9	96.9	0.2	1.56	1.81	0.55	0.84	2.50	7498	974	2	0	0	0	0	logfile
✔	8QYH	18754	2025-05-17	2023-10-26	2.4	2.62	2.47	2.7	0.008	1.03	0.0	0.04	17.93	0.00	2.177	8.50	0.12	1.4	98.6	0.0	3.24	0.65	0.85	3.41	2.7	0.003	0.49	0.0	0.04	17.30	0.00	2.390	6.80	1.11	1.2	98.8	0.0	3.66	0.33	0.67	0.87	3.22	15925	1837	19	0	10	484	0	logfile
✔	8QYJ	18755	2025-05-19	2023-10-26	2.73	3.16	2.80	3.0	0.002	0.44	0.0	0.04	13.65	0.00	2.235	2.65	0.00	2.0	98.0	0.0	1.76	0.79	0.88	3.08	3.0	0.002	0.49	0.0	0.04	15.91	0.00	2.455	2.26	1.47	2.2	97.8	0.0	1.90	0.27	0.75	0.86	2.75	19402	2498	13	0	3	0	0	logfile

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