Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8URB	42488	2025-05-22	2023-10-25	3.4	3.75	3.46	3.8	0.002	0.52	0.0	0.04	15.02	0.00	2.269	2.86	0.17	2.2	97.8	0.0	-0.61	0.73	0.82	3.32	3.8	0.003	0.51	0.0	0.04	15.75	0.00	2.088	2.77	1.76	3.1	96.9	0.0	0.23	1.13	0.71	0.82	2.37	22714	1359	7	41	2	0	11060	logfile
✔	8WWi	37889	2025-05-12	2023-10-25	3.43	3.62	3.57	3.6	0.002	0.41	0.0	0.04	8.18	0.00	2.085	7.35	0.95	1.7	98.3	0.0	0.41	0.60	0.67	1.27	3.6	0.004	0.75	0.0	0.05	14.35	0.00	2.376	12.93	3.59	3.5	96.5	0.0	0.45	2.31	0.62	0.70	0.54	8803	1143	5	0	0	0	0	logfile
✔	8UR8	42487	2025-05-19	2023-10-25	2.97	3.69	3.10	3.5	0.006	0.64	0.0	0.05	13.53	0.00	2.241	4.99	0.00	2.7	97.3	0.0	-0.82	0.84	0.86	3.75	3.5	0.004	0.52	0.0	0.04	15.34	0.00	2.502	6.02	0.58	2.7	97.3	0.0	0.98	0.55	0.84	0.86	3.45	18752	2316	4	0	0	0	0	logfile
✔	8WWK	37891	2025-05-12	2023-10-25	2.61	2.77	2.70	2.7	0.002	0.39	0.0	0.04	8.41	0.00	2.205	4.78	0.72	0.8	99.2	0.0	1.11	0.70	0.83	4.70	2.7	0.003	0.54	0.0	0.04	14.11	0.00	2.537	5.68	2.68	2.2	97.8	0.0	1.37	0.44	0.70	0.84	3.78	8967	1160	6	0	0	0	0	logfile
✔	8WWN	37894	2025-05-12	2023-10-25	2.65	2.83	2.75	2.8	0.002	0.44	0.0	0.04	9.19	0.00	2.180	5.02	0.62	1.2	98.8	0.0	0.87	0.71	0.83	4.98	2.8	0.003	0.53	0.0	0.04	14.00	0.00	2.522	5.41	3.10	1.8	98.2	0.0	1.44	1.57	0.70	0.84	3.74	8960	1160	6	0	0	0	0	logfile
✔	8UR3	42480	2025-05-12	2023-10-25	2.61	3.41	2.64	3.1	0.003	0.51	0.0	0.04	13.47	0.00	2.253	4.15	0.00	2.7	97.3	0.0	-0.63	0.86	0.85	3.65	3.0	0.002	0.49	0.0	0.04	15.10	0.00	2.550	5.56	0.77	2.7	97.3	0.0	1.03	0.55	0.87	0.86	3.40	9376	1158	2	0	0	0	0	logfile
✔	8WWJ	37890	2025-05-12	2023-10-25	3.03	3.30	3.23	3.2	0.003	0.44	0.0	0.04	8.31	0.00	2.118	5.67	0.63	1.8	98.2	0.0	1.11	0.66	0.79	4.07	3.2	0.003	0.57	0.0	0.04	14.18	0.00	2.509	5.90	2.00	2.2	97.8	0.0	1.42	0.66	0.67	0.80	3.28	8821	1143	5	0	0	0	0	logfile
✔	8URE	42491	2025-05-12	2023-10-25	4.4	3.48	4.67	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.7	0.009	0.83	0.0	0.03	5.57	0.01	2.468	3.69	0.00	5.7	94.3	0.0	-1.13	0.68	0.82	0.83	—	8896	1792	8	0	0	0	0	logfile
✔	8WWH	37888	2025-05-12	2023-10-25	2.84	3.06	3.01	3.0	0.003	0.42	0.0	0.04	8.13	0.00	2.156	4.75	0.63	1.8	98.2	0.0	0.92	0.64	0.81	3.95	3.0	0.003	0.53	0.0	0.04	13.90	0.00	2.508	6.13	1.79	1.8	98.2	0.0	1.67	0.52	0.62	0.80	3.10	8821	1143	5	0	0	0	0	logfile
✔	8UR6	42484	2025-05-11	2023-10-25	3.03	3.72	3.10	3.5	0.007	0.76	0.0	0.05	13.54	0.01	2.219	4.52	0.00	1.9	98.1	0.0	-0.07	0.83	0.84	2.50	3.5	0.003	0.50	0.0	0.04	14.69	0.00	2.489	5.60	0.95	1.7	98.3	0.0	1.08	1.21	0.83	0.85	2.26	7540	930	2	0	0	0	0	logfile
✔	8QXA	18716	2025-05-09	2023-10-24	4.05	3.51	3.75	4.2	0.014	2.24	0.0	0.10	18.94	0.01	2.420	4.19	0.00	3.5	96.5	0.0	-4.36	0.51	0.75	—	4.2	0.005	0.84	0.0	0.04	14.48	0.00	2.551	18.46	0.00	10.1	89.9	0.0	-4.38	1.41	0.48	0.76	—	3696	540	12	0	0	0	0	logfile
✔	8QXM	18732	2025-05-16	2023-10-24	2.94	3.04	3.00	3.0	0.003	0.63	0.0	0.04	17.60	0.01	1.812	2.88	0.00	4.1	95.9	0.0	0.06	0.77	0.83	2.81	3.0	0.003	0.61	0.0	0.05	17.95	0.00	1.800	3.68	1.45	3.8	96.2	0.0	0.67	1.15	0.77	0.85	2.66	14658	1784	8	0	24	0	0	logfile
✔	8WVY	37876	2025-05-11	2023-10-24	3.29	2.32	—	3.2	0.015	1.37	0.0	0.05	8.91	0.01	2.054	14.51	2.80	5.9	94.1	0.0	-1.42	0.71	0.66	2.58	3.2	0.004	0.73	0.0	0.04	14.29	0.00	2.490	5.60	2.44	6.4	93.6	0.0	-1.21	1.18	0.80	0.81	2.47	7241	930	3	0	0	0	0	logfile
✔	8WW2	37881	2025-05-11	2023-10-24	2.79	3.00	2.83	3.0	0.004	0.71	0.0	0.05	13.76	0.00	1.809	4.15	0.00	3.5	96.5	0.0	0.09	0.66	0.80	2.96	3.0	0.002	0.52	0.0	0.04	15.76	0.00	2.597	2.34	0.87	2.2	97.8	0.0	1.45	0.31	0.64	0.81	2.39	7792	1020	6	0	3	2	0	logfile
✔	8UQV	42478	2025-05-28	2023-10-24	3.6	3.86	3.68	3.9	0.005	1.00	0.0	0.05	16.97	0.00	1.708	46.49	0.05	17.5	82.4	0.0	-3.66	0.60	0.59	0.13	3.9	0.005	0.83	0.0	0.05	16.86	0.01	2.196	10.65	2.74	12.5	87.5	0.0	-2.69	1.20	0.74	0.80	1.74	18024	2188	12	0	12	80	0	logfile
✔	8QX9	18715	2025-05-09	2023-10-24	3.76	3.94	3.60	4.3	0.014	2.17	0.0	0.11	18.79	0.01	2.496	2.80	0.00	2.3	97.7	0.0	-4.75	0.50	0.70	3.13	4.3	0.004	0.89	0.0	0.04	20.18	0.00	2.559	15.80	2.87	3.1	96.9	0.0	-4.78	2.16	0.48	0.75	5.06	3696	540	12	0	0	0	0	logfile
✔	8QXB	18717	2025-05-10	2023-10-24	3.86	3.89	3.44	4.3	0.014	2.28	0.0	0.11	18.19	0.01	2.508	1.77	0.00	2.3	97.7	0.0	-3.90	0.53	0.71	2.65	4.2	0.004	0.87	0.0	0.04	18.50	0.00	2.609	8.30	4.41	4.5	95.5	0.0	-4.74	3.43	0.53	0.77	2.40	5544	810	18	0	0	0	0	logfile
✔	8QXK	18730	2025-05-17	2023-10-24	2.66	2.75	2.71	2.7	0.011	0.74	0.0	0.05	17.51	0.00	1.965	3.56	0.00	2.4	97.6	0.0	-0.20	0.76	0.81	4.69	2.8	0.003	0.59	0.0	0.04	18.14	0.00	2.007	3.23	1.73	2.1	97.8	0.1	0.48	0.34	0.76	0.85	4.06	15323	1832	8	0	28	0	0	logfile
✔	8QXN	18733	2025-05-16	2023-10-24	2.98	3.14	3.10	3.1	0.003	0.62	0.0	0.05	17.34	0.00	1.867	4.09	0.07	3.9	96.1	0.0	0.87	0.68	0.73	1.57	3.1	0.003	0.61	0.0	0.04	18.08	0.00	1.857	4.05	1.54	4.7	95.3	0.0	1.14	1.75	0.75	0.82	2.14	14461	1760	8	0	22	0	0	logfile
✔	8WVU	37869	2025-05-12	2023-10-24	3.61	2.50	—	2.3	0.014	1.35	3.0	0.06	8.44	0.01	1.989	17.55	2.68	6.0	94.0	0.0	-1.23	0.71	0.62	2.88	2.1	0.006	0.78	0.0	0.05	14.57	0.01	2.525	8.50	3.16	8.3	91.7	0.0	-1.70	1.86	0.75	0.75	2.62	7427	972	3	0	0	0	0	logfile

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