Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QXN	18733	2025-05-16	2023-10-24	2.98	3.14	3.10	3.1	0.003	0.62	0.0	0.05	17.34	0.00	1.867	4.09	0.07	3.9	96.1	0.0	0.87	0.68	0.73	1.57	3.1	0.003	0.61	0.0	0.04	18.08	0.00	1.857	4.05	1.54	4.7	95.3	0.0	1.14	1.75	0.75	0.82	2.14	14461	1760	8	0	22	0	0	logfile
✔	8WVV	37873	2025-05-10	2023-10-24	3.35	2.72	3.58	3.5	0.007	1.27	13.0	0.08	17.09	0.01	1.693	25.67	1.28	7.7	92.3	0.0	-2.78	0.74	0.74	0.66	3.5	0.003	0.72	0.0	0.04	17.50	0.00	2.580	14.62	3.51	5.5	94.5	0.0	-1.75	1.05	0.76	0.79	1.05	5596	718	1	0	0	0	0	logfile
✔	8WVY	37876	2025-05-11	2023-10-24	3.29	2.32	—	3.2	0.015	1.37	0.0	0.05	8.91	0.01	2.054	14.51	2.80	5.9	94.1	0.0	-1.42	0.71	0.66	2.58	3.2	0.004	0.73	0.0	0.04	14.29	0.00	2.490	5.60	2.44	6.4	93.6	0.0	-1.21	1.18	0.80	0.81	2.47	7241	930	3	0	0	0	0	logfile
✔	8WVU	37869	2025-05-12	2023-10-24	3.61	2.50	—	2.3	0.014	1.35	3.0	0.06	8.44	0.01	1.989	17.55	2.68	6.0	94.0	0.0	-1.23	0.71	0.62	2.88	2.1	0.006	0.78	0.0	0.05	14.57	0.01	2.525	8.50	3.16	8.3	91.7	0.0	-1.70	1.86	0.75	0.75	2.62	7427	972	3	0	0	0	0	logfile
✔	8WV6	37866	2025-05-28	2023-10-23	2.3	2.18	2.32	2.2	0.006	0.77	0.0	0.05	14.31	0.01	2.123	5.37	0.03	2.4	97.6	0.0	-1.41	0.70	0.85	5.14	2.3	0.002	0.57	0.0	0.04	16.53	0.00	2.531	4.45	0.79	1.6	98.4	0.0	0.97	0.38	0.70	0.86	4.28	30984	4068	12	0	0	288	0	logfile
✔	8QX8	18701	2025-05-28	2023-10-23	4.6	4.51	—	2.9	0.002	0.58	0.0	0.04	13.35	0.00	2.225	8.54	0.09	9.3	90.4	0.3	-0.10	0.85	0.75	—	2.8	0.003	0.60	0.0	0.04	13.46	0.00	2.481	7.92	0.00	10.7	89.1	0.2	-0.17	0.31	0.85	0.76	—	30086	4443	6	0	0	0	0	logfile
✔	8WV4	37864	2025-05-11	2023-10-23	3.3	3.25	3.30	3.3	0.002	0.49	0.0	0.04	14.13	0.00	1.938	5.08	3.33	1.0	99.0	0.0	-2.63	0.74	0.84	4.40	3.3	0.003	0.59	0.0	0.05	15.15	0.00	2.293	6.88	1.78	2.5	97.5	0.0	-1.08	1.17	0.75	0.87	4.11	8170	1030	10	0	10	0	0	logfile
✔	8WV5	37865	2025-05-18	2023-10-23	3.5	3.56	3.55	3.6	0.002	0.47	0.0	0.04	12.21	0.00	1.812	6.94	0.00	1.6	98.4	0.0	-3.38	0.81	0.85	3.23	3.5	0.004	0.68	0.0	0.05	15.25	0.00	2.219	7.44	1.83	2.4	97.6	0.0	-1.17	1.65	0.82	0.88	3.46	16340	2060	20	0	20	0	0	logfile
✔	8UPX	42456	2025-05-22	2023-10-23	3.4	4.02	3.50	3.8	0.004	0.70	0.0	0.05	18.28	0.00	2.118	7.65	0.20	6.6	93.3	0.1	-0.97	0.83	0.81	2.09	3.8	0.003	0.66	0.0	0.05	15.90	0.00	2.475	5.41	0.98	6.1	93.9	0.1	-0.40	0.36	0.84	0.84	2.08	23232	2904	18	0	38	0	0	logfile
✔	8UQi	42469	2025-05-11	2023-10-23	4.5	7.64	4.71	6.8	0.003	0.84	0.0	0.04	13.62	0.01	2.118	24.94	0.13	7.6	92.4	0.0	-1.83	0.90	0.79	—	6.9	0.004	0.95	0.0	0.05	14.18	0.01	2.235	20.86	0.00	5.3	93.8	0.8	-0.43	3.91	0.85	0.63	—	7318	962	2	0	0	0	0	logfile
✔	8UQK	42472	2025-05-11	2023-10-23	4.61	6.61	4.58	5.7	0.003	0.86	0.0	0.04	13.61	0.01	2.184	21.41	0.00	6.5	93.4	0.1	-2.07	0.86	0.72	—	5.7	0.003	0.77	0.0	0.04	14.24	0.01	2.480	15.22	0.00	8.4	91.4	0.2	-2.46	2.65	0.85	0.67	—	7318	962	2	0	0	0	0	logfile
✔	8UQ6	42462	2025-05-14	2023-10-23	3.6	5.71	2.39	62.0	0.016	2.36	10.0	0.13	16.35	0.02	2.502	1.87	5.96	23.5	71.6	4.9	-4.36	0.19	0.00	0.38	20.0	0.003	0.84	0.0	0.05	16.63	0.01	2.349	5.03	2.09	19.1	80.6	0.4	-3.75	2.34	0.22	0.15	-0.09	11700	765	1	0	0	0	5689	logfile
✔	8UPT	42455	2025-05-09	2023-10-23	2.8	3.38	2.83	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8UPY	42457	2025-05-09	2023-10-23	2.8	3.43	2.99	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.61	0.01	2.038	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	8UPH	42448	2025-05-11	2023-10-22	4.13	4.91	4.16	4.4	0.005	0.71	0.0	0.04	14.18	0.02	2.236	13.34	0.12	2.3	97.6	0.1	-0.18	0.89	0.85	—	4.4	0.005	0.74	0.0	0.04	14.45	0.01	2.490	12.91	0.00	3.4	96.6	0.0	-0.42	0.88	0.90	0.87	—	8121	1054	4	0	2	0	0	logfile
✔	8UPF	42446	2025-05-19	2023-10-22	3.2	3.76	3.25	3.6	0.008	0.73	0.0	0.04	26.92	0.00	2.065	10.34	0.47	4.3	95.7	0.0	-2.24	0.79	0.83	2.25	3.6	0.003	0.60	0.0	0.03	26.59	0.00	2.104	7.61	1.28	3.7	96.3	0.0	1.88	0.46	0.77	0.82	1.46	14012	1006	13	293	2	0	0	logfile
✔	8WUU	37860	2025-05-17	2023-10-21	3.2	4.23	3.26	3.3	0.006	0.58	0.0	0.04	20.53	0.00	2.145	6.59	0.00	2.5	97.5	0.0	1.21	0.81	0.61	2.37	3.3	0.003	0.48	0.0	0.03	20.21	0.00	2.504	7.75	1.36	1.8	98.2	0.0	1.52	0.63	0.91	0.88	1.93	14563	1313	5	181	0	0	0	logfile
✘	8WUT	37859	2025-05-21	2023-10-21	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18316	1766	6	190	0	0	0	logfile
✘	8WUS	37858	2025-05-21	2023-10-21	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18358	1766	6	192	0	0	0	logfile
✘	8WUV	37861	2025-05-22	2023-10-21	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18899	1779	6	213	0	0	0	logfile

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