Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UP5	42443	2025-05-19	2023-10-21	3.56	3.79	3.55	3.6	0.006	0.71	1.0	0.05	21.35	0.00	1.114	24.48	0.60	6.3	93.7	0.0	0.41	0.73	0.63	1.42	3.6	0.005	0.91	0.0	0.04	21.50	0.00	2.200	14.92	3.41	5.0	95.0	0.0	0.36	0.45	0.73	0.64	1.37	12628	712	5	73	0	0	5818	logfile
✔	8UoP	42435	2025-05-15	2023-10-20	3.8	3.97	3.89	3.8	0.005	0.91	0.0	0.04	16.45	0.01	1.954	17.97	0.73	15.7	83.6	0.7	-3.60	0.18	0.15	0.40	3.9	0.003	0.63	0.0	0.04	16.88	0.00	2.309	11.00	2.79	10.7	88.9	0.3	-3.00	0.92	0.23	0.23	0.32	13188	872	2	0	0	0	6544	logfile
✔	8WUA	37852	2025-05-10	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.76	0.0	0.04	16.96	0.00	2.434	8.33	3.62	6.1	93.9	0.0	0.12	1.49	0.54	0.69	1.16	5494	675	1	0	0	0	0	logfile
✔	8UP1	42442	2025-05-11	2023-10-20	4.55	3.74	4.57	4.7	0.009	1.48	0.0	0.06	6.87	0.01	2.606	0.00	0.00	1.5	98.5	0.0	0.31	0.79	0.80	—	4.7	0.006	0.83	0.0	0.04	5.82	0.00	2.030	6.29	0.00	8.2	91.5	0.3	0.10	2.24	0.82	0.84	—	7088	1428	4	0	0	0	0	logfile
✔	8UoY	42441	2025-05-15	2023-10-20	3.4	3.52	3.51	30.0	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	30.0	0.003	0.70	0.0	0.04	17.29	0.00	2.298	9.71	4.55	8.1	91.8	0.1	-2.85	1.38	0.21	0.24	0.66	13188	872	2	0	0	0	6544	logfile
✔	8WUi	37855	2025-05-17	2023-10-20	3.4	3.66	3.47	3.7	0.012	0.84	0.0	0.05	19.52	0.01	1.049	21.56	5.09	6.2	93.0	0.7	-1.15	0.56	0.68	1.43	3.7	0.003	0.68	0.0	0.04	18.31	0.00	2.531	11.37	3.50	5.4	94.2	0.4	-0.02	0.69	0.55	0.76	1.40	15340	1826	8	0	14	0	0	logfile
✔	8Uo0	42423	2025-05-10	2023-10-19	3.5	4.01	3.77	4.0	0.006	0.93	0.0	0.06	13.94	0.01	2.268	5.98	0.21	2.5	97.5	0.0	1.21	0.61	0.80	1.82	4.0	0.003	0.51	0.0	0.04	14.61	0.00	2.518	3.47	3.70	2.3	97.7	0.0	1.70	0.34	0.63	0.82	1.59	6222	902	6	0	2	0	0	logfile
✔	8UNT	42416	2025-05-10	2023-10-19	3.4	3.76	3.54	3.7	0.005	0.81	0.0	0.05	14.50	0.00	2.232	5.13	0.32	1.4	98.6	0.0	1.29	0.64	0.84	2.66	3.7	0.003	0.51	0.0	0.04	15.20	0.00	2.508	2.72	3.07	1.4	98.6	0.0	1.48	0.36	0.66	0.86	2.35	6712	913	6	0	2	1	0	logfile
✔	8UNX	42420	2025-05-10	2023-10-19	3.6	3.87	3.63	3.9	0.006	0.97	0.0	0.06	13.81	0.01	2.177	5.50	0.00	2.3	97.7	0.0	1.34	0.63	0.82	2.78	3.8	0.002	0.53	0.0	0.04	14.77	0.00	2.505	3.38	1.34	1.2	98.8	0.0	1.65	0.41	0.65	0.84	2.17	6688	923	6	0	2	0	0	logfile
✔	8Uo2	42425	2025-05-10	2023-10-19	3.6	4.02	3.82	4.0	0.005	0.76	0.0	0.05	13.65	0.00	2.237	5.87	0.40	1.7	98.3	0.0	1.29	0.63	0.80	3.52	4.0	0.002	0.47	0.0	0.04	14.61	0.00	2.502	3.19	2.20	1.5	98.5	0.0	1.96	0.93	0.65	0.81	2.99	6504	956	6	0	2	0	0	logfile
✔	8UNY	42421	2025-05-10	2023-10-19	3.6	4.06	3.81	4.0	0.006	0.97	0.0	0.06	14.64	0.01	2.255	7.64	0.00	1.7	98.3	0.0	1.32	0.63	0.80	2.56	4.0	0.002	0.54	0.0	0.04	14.51	0.00	2.507	4.02	2.09	1.1	98.9	0.0	1.58	0.97	0.65	0.81	2.62	6546	912	6	0	2	0	0	logfile
✔	8WU1	37849	2025-05-11	2023-10-19	3.2	3.40	3.18	3.4	0.008	0.62	0.0	0.04	11.92	0.00	2.208	7.36	0.00	4.5	95.5	0.0	-0.58	0.66	0.79	3.60	3.4	0.004	0.64	0.0	0.04	13.98	0.00	2.547	6.72	1.87	3.7	96.3	0.0	0.16	0.36	0.66	0.79	3.32	7250	1014	5	0	1	0	0	logfile
✔	8WTo	37838	2025-05-13	2023-10-19	2.38	2.53	2.40	2.6	0.016	1.04	0.0	0.06	14.49	0.01	2.081	3.00	0.00	1.6	98.4	0.0	-3.83	0.69	0.85	4.87	2.6	0.004	0.63	0.0	0.04	16.68	0.00	1.965	4.71	1.30	1.8	98.2	0.0	1.44	0.40	0.65	0.84	4.25	9880	1248	6	0	6	4	0	logfile
✘	8Uo1	42424	2025-05-10	2023-10-19	3.6	3.92	3.71	3.9	0.006	0.92	0.0	0.06	13.48	0.00	2.233	5.01	0.18	2.1	97.9	0.0	0.78	0.65	0.83	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6915	1006	6	0	3	0	0	logfile
✘	8UNS	42415	2025-05-10	2023-10-19	3.4	3.73	3.46	3.7	0.004	0.77	0.0	0.05	14.48	0.00	2.332	3.61	0.00	2.1	97.9	0.0	1.05	0.65	0.86	4.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6683	916	6	0	2	1	0	logfile
✔	8UNo	42411	2025-05-10	2023-10-19	3.3	3.74	3.50	3.7	0.005	0.67	0.0	0.04	13.45	0.00	2.236	5.25	0.17	2.1	97.9	0.0	1.15	0.59	0.82	3.67	3.7	0.002	0.54	0.0	0.04	14.76	0.00	2.484	3.32	1.04	1.6	98.4	0.0	1.20	0.95	0.64	0.86	3.53	6489	894	6	0	2	0	0	logfile
✔	8QW9	18683	2025-05-29	2023-10-19	4.3	3.55	3.40	3.6	0.006	0.72	0.0	0.05	13.28	0.00	1.978	10.45	0.65	5.4	94.6	0.1	-0.46	0.67	0.76	—	3.5	0.004	0.64	0.0	0.04	14.40	0.00	1.858	27.34	0.00	5.4	94.6	0.0	0.50	1.19	0.70	0.78	—	32356	3909	21	37	8	0	645	logfile
✔	8Uo5	42428	2025-05-13	2023-10-19	3.27	4.05	3.38	3.7	0.011	1.27	0.0	0.07	14.36	0.01	2.047	4.31	0.81	4.1	95.8	0.2	-2.58	0.85	0.76	1.29	3.7	0.003	0.71	0.0	0.04	16.37	0.00	2.072	11.54	3.16	5.2	94.7	0.1	-0.55	0.95	0.83	0.72	1.01	10216	1303	5	0	2	0	0	logfile
✔	8QWE	18693	2025-05-14	2023-10-19	3.14	3.37	3.20	3.4	0.005	0.60	0.0	0.04	20.60	0.00	2.028	6.30	0.00	4.7	95.3	0.0	-0.57	0.73	0.85	2.66	3.4	0.004	0.59	0.0	0.04	20.85	0.00	1.972	7.20	3.21	7.9	92.1	0.0	-0.40	0.31	0.72	0.85	2.71	11721	1185	6	88	5	0	0	logfile
✔	8QWF	18694	2025-05-14	2023-10-19	3.08	3.28	3.13	3.3	0.002	0.49	0.0	0.04	18.37	0.00	2.004	6.49	0.00	3.3	96.7	0.0	0.01	0.69	0.77	2.88	3.3	0.004	0.65	0.0	0.04	19.41	0.00	1.972	6.90	0.92	6.2	93.8	0.0	0.11	0.31	0.74	0.84	2.60	11501	1186	6	77	6	0	0	logfile

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