Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UNV	42418	2025-05-10	2023-10-19	3.3	3.79	3.60	3.8	0.006	0.87	0.0	0.06	14.50	0.00	2.201	4.63	0.34	2.0	98.0	0.0	0.91	0.65	0.85	3.31	3.7	0.002	0.52	0.0	0.04	14.77	0.00	2.434	3.35	1.36	1.9	98.0	0.1	1.43	0.37	0.64	0.85	2.59	6591	911	6	0	2	0	0	logfile
✔	8UNL	42408	2025-05-10	2023-10-19	3.3	3.59	3.35	3.6	0.005	0.68	0.0	0.04	14.03	0.00	2.228	3.82	0.00	1.6	98.4	0.0	1.49	0.66	0.88	2.99	3.6	0.002	0.45	0.0	0.04	13.89	0.00	2.502	2.86	0.99	1.3	98.7	0.0	1.68	0.92	0.68	0.88	2.99	6550	894	6	0	2	1	0	logfile
✔	8UNJ	42406	2025-05-14	2023-10-19	3.35	3.57	3.41	3.5	0.003	0.70	0.0	0.04	14.94	0.01	2.083	8.59	3.51	2.6	97.4	0.0	-1.77	0.65	0.58	1.04	3.5	0.003	0.70	0.0	0.04	16.64	0.00	2.007	13.95	2.37	2.8	97.2	0.0	0.05	1.37	0.68	0.65	0.92	11916	1493	9	0	7	0	0	logfile
✔	8UNT	42416	2025-05-10	2023-10-19	3.4	3.76	3.54	3.7	0.005	0.81	0.0	0.05	14.50	0.00	2.232	5.13	0.32	1.4	98.6	0.0	1.29	0.64	0.84	2.66	3.7	0.003	0.51	0.0	0.04	15.20	0.00	2.508	2.72	3.07	1.4	98.6	0.0	1.48	0.36	0.66	0.86	2.35	6712	913	6	0	2	1	0	logfile
✔	8UNQ	42413	2025-05-10	2023-10-19	3.3	3.68	3.45	3.7	0.004	0.77	0.0	0.05	13.49	0.00	2.218	3.68	0.33	1.4	98.6	0.0	1.09	0.61	0.83	2.97	3.7	0.002	0.49	0.0	0.04	14.71	0.00	2.477	2.74	0.99	1.8	98.2	0.0	1.55	0.93	0.65	0.86	2.86	6687	915	6	0	2	1	0	logfile
✔	8UNN	42410	2025-05-10	2023-10-19	3.4	3.72	3.46	3.7	0.005	0.67	0.0	0.04	13.92	0.00	2.221	4.22	0.00	1.4	98.6	0.0	0.86	0.65	0.86	3.18	3.7	0.004	0.99	1.0	0.04	15.32	0.00	2.382	3.49	2.27	1.8	98.2	0.0	0.91	0.33	0.67	0.87	2.67	6503	901	6	0	2	1	0	logfile
✔	8UNP	42412	2025-05-10	2023-10-19	3.3	3.63	3.39	3.6	0.006	0.80	0.0	0.04	13.79	0.00	2.207	6.73	0.00	1.9	98.1	0.0	0.82	0.65	0.87	3.59	3.6	0.004	0.53	0.0	0.04	15.30	0.00	2.501	2.48	1.88	1.6	98.4	0.0	1.39	0.93	0.65	0.87	2.74	6559	906	6	0	2	1	0	logfile
✘	8UNS	42415	2025-05-10	2023-10-19	3.4	3.73	3.46	3.7	0.004	0.77	0.0	0.05	14.48	0.00	2.332	3.61	0.00	2.1	97.9	0.0	1.05	0.65	0.86	4.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6683	916	6	0	2	1	0	logfile
✔	8Uo3	42426	2025-05-10	2023-10-19	3.5	3.84	3.61	3.8	0.006	0.87	0.0	0.06	14.93	0.01	2.246	6.81	0.20	3.0	97.0	0.0	0.16	0.67	0.84	2.66	3.8	0.002	0.51	0.0	0.04	14.34	0.00	2.025	3.61	1.78	2.1	97.9	0.0	0.94	0.37	0.67	0.83	2.09	6650	977	6	0	3	0	0	logfile
✔	8QW9	18683	2025-05-29	2023-10-19	4.3	3.55	3.40	3.6	0.006	0.72	0.0	0.05	13.28	0.00	1.978	10.45	0.65	5.4	94.6	0.1	-0.46	0.67	0.76	—	3.5	0.004	0.64	0.0	0.04	14.40	0.00	1.858	27.34	0.00	5.4	94.6	0.0	0.50	1.19	0.70	0.78	—	32356	3909	21	37	8	0	645	logfile
✔	8QWD	18691	2025-05-12	2023-10-19	3.33	3.62	3.38	3.7	0.002	0.51	0.0	0.04	19.14	0.00	2.070	8.24	0.30	5.0	95.0	0.0	-1.20	0.67	0.80	1.81	3.7	0.005	0.62	0.0	0.04	19.41	0.00	2.056	8.35	2.67	9.6	90.4	0.0	-1.02	0.87	0.65	0.80	1.77	9204	1103	2	0	2	4	0	logfile
✔	8Uo2	42425	2025-05-10	2023-10-19	3.6	4.02	3.82	4.0	0.005	0.76	0.0	0.05	13.65	0.00	2.237	5.87	0.40	1.7	98.3	0.0	1.29	0.63	0.80	3.52	4.0	0.002	0.47	0.0	0.04	14.61	0.00	2.502	3.19	2.20	1.5	98.5	0.0	1.96	0.93	0.65	0.81	2.99	6504	956	6	0	2	0	0	logfile
✔	8WTZ	37847	2025-05-16	2023-10-19	3.1	3.40	3.17	3.4	0.006	0.85	2.0	0.06	18.20	0.01	1.650	12.99	2.15	1.5	98.0	0.6	0.13	0.59	0.77	1.87	3.4	0.003	0.63	0.0	0.04	17.40	0.00	2.576	7.09	1.64	2.2	97.7	0.1	1.57	1.37	0.56	0.77	1.60	14930	1778	8	0	15	0	0	logfile
✔	8UNK	42407	2025-05-14	2023-10-19	2.91	3.43	2.90	3.2	0.004	0.55	0.0	0.04	15.98	0.00	1.226	22.66	0.00	4.9	95.1	0.0	0.18	0.68	0.60	1.06	3.3	0.005	0.63	0.0	0.04	16.60	0.00	2.335	16.49	2.33	5.5	94.5	0.0	-0.13	1.04	0.72	0.68	1.04	9862	691	4	0	0	0	4793	logfile
✔	8UNX	42420	2025-05-10	2023-10-19	3.6	3.87	3.63	3.9	0.006	0.97	0.0	0.06	13.81	0.01	2.177	5.50	0.00	2.3	97.7	0.0	1.34	0.63	0.82	2.78	3.8	0.002	0.53	0.0	0.04	14.77	0.00	2.505	3.38	1.34	1.2	98.8	0.0	1.65	0.41	0.65	0.84	2.17	6688	923	6	0	2	0	0	logfile
✔	8WU1	37849	2025-05-11	2023-10-19	3.2	3.40	3.18	3.4	0.008	0.62	0.0	0.04	11.92	0.00	2.208	7.36	0.00	4.5	95.5	0.0	-0.58	0.66	0.79	3.60	3.4	0.004	0.64	0.0	0.04	13.98	0.00	2.547	6.72	1.87	3.7	96.3	0.0	0.16	0.36	0.66	0.79	3.32	7250	1014	5	0	1	0	0	logfile
✘	8Uo1	42424	2025-05-10	2023-10-19	3.6	3.92	3.71	3.9	0.006	0.92	0.0	0.06	13.48	0.00	2.233	5.01	0.18	2.1	97.9	0.0	0.78	0.65	0.83	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6915	1006	6	0	3	0	0	logfile
✔	8Uo0	42423	2025-05-10	2023-10-19	3.5	4.01	3.77	4.0	0.006	0.93	0.0	0.06	13.94	0.01	2.268	5.98	0.21	2.5	97.5	0.0	1.21	0.61	0.80	1.82	4.0	0.003	0.51	0.0	0.04	14.61	0.00	2.518	3.47	3.70	2.3	97.7	0.0	1.70	0.34	0.63	0.82	1.59	6222	902	6	0	2	0	0	logfile
✔	8UNY	42421	2025-05-10	2023-10-19	3.6	4.06	3.81	4.0	0.006	0.97	0.0	0.06	14.64	0.01	2.255	7.64	0.00	1.7	98.3	0.0	1.32	0.63	0.80	2.56	4.0	0.002	0.54	0.0	0.04	14.51	0.00	2.507	4.02	2.09	1.1	98.9	0.0	1.58	0.97	0.65	0.81	2.62	6546	912	6	0	2	0	0	logfile
✔	8WTo	37838	2025-05-13	2023-10-19	2.38	2.53	2.40	2.6	0.016	1.04	0.0	0.06	14.49	0.01	2.081	3.00	0.00	1.6	98.4	0.0	-3.83	0.69	0.85	4.87	2.6	0.004	0.63	0.0	0.04	16.68	0.00	1.965	4.71	1.30	1.8	98.2	0.0	1.44	0.40	0.65	0.84	4.25	9880	1248	6	0	6	4	0	logfile

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