Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QW9	18683	2025-05-29	2023-10-19	4.3	3.55	3.40	3.6	0.006	0.72	0.0	0.05	13.28	0.00	1.978	10.45	0.65	5.4	94.6	0.1	-0.46	0.67	0.76	—	3.5	0.004	0.64	0.0	0.04	14.40	0.00	1.858	27.34	0.00	5.4	94.6	0.0	0.50	1.19	0.70	0.78	—	32356	3909	21	37	8	0	645	logfile
✔	8UN7	42394	2025-05-16	2023-10-18	3.55	3.01	3.15	3.2	0.004	0.75	4.0	0.05	18.14	0.00	1.628	6.45	4.72	12.7	86.4	0.9	-4.64	0.71	0.83	2.45	3.2	0.010	0.89	0.0	0.06	18.22	0.01	2.237	4.96	5.35	17.9	81.9	0.2	-4.78	0.90	0.74	0.84	2.28	14296	1752	16	0	24	0	0	logfile
✔	8UN2	42391	2025-05-10	2023-10-18	2.3	2.11	2.35	1.9	0.009	0.79	0.0	0.05	14.15	0.01	2.009	1.84	0.00	1.9	98.1	0.0	-2.74	0.76	0.79	5.07	1.8	0.003	0.58	0.0	0.05	16.78	0.00	2.153	4.78	1.76	1.9	98.1	0.0	1.22	0.53	0.87	0.87	4.58	6854	866	4	0	2	0	0	logfile
✔	8UMU	42384	2025-05-20	2023-10-18	3.16	3.41	3.22	3.4	0.006	1.02	4.0	0.06	17.81	0.01	2.104	8.60	0.84	2.8	97.2	0.0	-1.89	0.71	0.71	1.14	3.4	0.004	0.68	0.0	0.04	17.89	0.00	1.966	13.12	3.87	3.3	96.7	0.0	0.36	0.51	0.71	0.73	1.00	20521	2603	12	0	7	0	0	logfile
✔	8WT9	37830	2025-05-16	2023-10-18	2.7	3.37	2.80	3.1	0.008	1.36	0.0	0.08	20.16	0.00	1.607	0.58	0.98	0.8	99.2	0.0	-1.58	0.89	0.89	4.37	3.2	0.003	0.52	0.0	0.04	20.78	0.00	1.961	3.68	0.39	0.4	99.6	0.0	2.79	1.18	0.85	0.88	3.58	14982	1258	13	239	2	2	0	logfile
✔	8WTD	37832	2025-05-10	2023-10-18	3.06	3.33	3.05	3.4	0.005	0.91	7.0	0.05	18.48	0.00	2.232	8.87	0.72	5.3	93.9	0.8	-0.02	0.53	0.80	1.75	3.4	0.003	0.57	0.0	0.04	18.05	0.00	2.570	6.42	2.31	4.6	95.3	0.1	0.25	0.97	0.59	0.84	2.56	6456	790	3	0	4	0	0	logfile
✔	8QVX	18677	2025-05-09	2023-10-18	2.7	3.42	2.68	3.2	0.004	0.68	0.0	0.04	17.62	0.00	2.195	14.71	0.46	4.7	95.1	0.2	1.30	0.71	0.71	1.07	3.2	0.003	0.64	0.0	0.04	18.27	0.00	2.237	9.68	3.66	4.9	94.9	0.2	1.71	0.50	0.69	0.69	0.50	3948	496	2	0	0	0	0	logfile
✔	8WTJ	37835	2025-05-28	2023-10-18	4.64	6.17	5.25	4.7	0.003	0.85	0.0	0.05	14.83	0.01	2.239	9.97	0.03	8.6	91.3	0.0	-2.46	0.84	0.80	—	4.7	0.003	0.66	0.0	0.04	14.39	0.00	2.380	17.31	0.00	9.0	90.9	0.1	-1.82	0.42	0.84	0.80	—	29931	3793	4	0	0	0	0	logfile
✔	8UMT	42383	2025-05-20	2023-10-18	3.33	3.59	3.44	3.5	0.004	0.75	0.0	0.05	14.62	0.01	2.048	9.08	4.14	3.6	96.3	0.0	-2.12	0.75	0.71	1.12	3.5	0.006	0.86	1.0	0.05	16.51	0.00	1.509	17.05	3.97	3.8	96.2	0.0	-0.32	1.78	0.77	0.75	0.94	20697	2625	12	0	7	0	0	logfile
✔	8UN1	42390	2025-05-21	2023-10-18	3.9	4.40	4.26	4.3	0.014	1.17	0.0	0.05	16.24	0.01	2.085	21.08	0.47	5.1	94.9	0.0	-0.76	0.71	0.65	0.23	4.3	0.004	0.82	0.0	0.05	17.42	0.01	2.381	15.90	4.51	5.0	95.0	0.0	0.00	2.32	0.75	0.75	0.58	22091	2904	21	0	0	0	0	logfile
✔	8UN0	42389	2025-05-21	2023-10-18	3.0	3.26	3.13	3.2	0.004	0.80	0.0	0.05	18.78	0.01	2.068	6.27	0.56	3.1	96.9	0.0	-1.93	0.75	0.82	1.88	3.2	0.004	0.69	0.0	0.04	19.08	0.00	1.928	8.50	2.60	2.6	97.4	0.0	0.66	0.96	0.76	0.84	2.20	21860	2647	15	47	9	0	0	logfile
✔	8UMR	42382	2025-05-19	2023-10-18	4.42	5.02	4.77	4.6	0.004	0.82	0.0	0.05	12.52	0.01	2.052	27.72	0.00	2.7	97.3	0.0	-0.03	0.83	0.77	—	4.6	0.003	0.82	0.0	0.04	13.53	0.01	2.290	19.78	0.00	3.5	96.5	0.0	0.16	1.13	0.84	0.82	—	18615	2364	21	0	0	0	0	logfile
✔	8UMW	42386	2025-05-21	2023-10-18	2.93	3.19	3.06	3.2	0.004	0.69	1.0	0.05	15.13	0.01	2.045	6.48	1.90	2.5	97.5	0.0	-1.73	0.73	0.83	2.90	3.2	0.003	0.62	0.0	0.04	17.77	0.00	1.968	7.37	2.60	2.2	97.8	0.0	0.61	1.03	0.74	0.87	2.64	21860	2647	15	47	9	0	0	logfile
✔	8UMV	42385	2025-05-21	2023-10-18	2.75	2.95	2.82	3.0	0.003	0.68	0.0	0.05	15.43	0.01	2.062	7.08	1.69	2.2	97.8	0.0	-1.56	0.71	0.83	3.28	3.0	0.004	0.61	0.0	0.04	17.66	0.00	1.930	8.25	2.29	1.9	98.1	0.0	0.83	0.94	0.74	0.87	3.01	21860	2647	15	47	9	0	0	logfile
✔	8WT8	37829	2025-05-16	2023-10-18	2.9	3.51	2.96	3.3	0.008	1.33	0.0	0.08	20.48	0.00	1.611	0.18	0.59	1.9	98.1	0.0	-2.17	0.89	0.88	2.68	3.3	0.003	0.54	0.0	0.03	21.04	0.00	1.985	3.80	0.98	1.2	98.8	0.0	2.56	0.47	0.85	0.87	1.86	14916	1246	11	239	1	0	0	logfile
✔	8WT7	37828	2025-05-16	2023-10-18	2.7	3.41	2.76	3.1	0.008	1.31	0.0	0.08	19.85	0.00	1.608	0.25	0.49	0.7	99.3	0.0	-1.68	0.88	0.88	3.73	3.1	0.003	0.51	0.0	0.03	20.66	0.00	1.943	3.53	0.39	0.6	99.4	0.0	2.94	0.41	0.86	0.86	3.13	14846	1246	14	239	2	4	0	logfile
✔	8QW4	18680	2025-05-09	2023-10-18	2.9	3.70	2.98	3.7	0.007	1.10	1.0	0.06	13.20	0.01	2.091	17.12	0.26	14.0	86.0	0.0	-3.29	0.56	0.64	3.16	3.7	0.005	1.00	0.0	0.05	17.03	0.01	2.500	15.26	3.69	9.3	90.7	0.0	-2.04	1.22	0.54	0.68	1.79	3479	434	2	0	0	0	0	logfile
✔	8WT6	37827	2025-05-16	2023-10-18	2.5	3.24	2.59	3.0	0.008	1.36	0.0	0.08	19.93	0.01	1.607	0.40	0.40	0.7	99.3	0.0	-1.54	0.86	0.90	5.47	3.0	0.003	0.53	0.0	0.04	20.74	0.00	1.817	3.84	0.30	0.6	99.4	0.0	2.75	0.43	0.81	0.85	4.09	14743	1246	15	233	2	4	0	logfile
✔	8UMY	42388	2025-05-21	2023-10-18	2.83	3.06	2.93	3.1	0.003	0.63	1.0	0.04	15.23	0.01	2.080	6.09	2.34	2.2	97.8	0.0	-1.84	0.69	0.83	2.98	3.1	0.003	0.60	0.0	0.04	17.40	0.00	1.951	7.17	2.51	1.9	98.1	0.0	0.89	0.52	0.71	0.86	2.79	21860	2647	15	47	9	0	0	logfile
✔	8UMP	42381	2025-05-21	2023-10-18	2.92	3.27	3.11	3.3	0.007	0.74	0.0	0.04	19.06	0.01	2.226	7.20	0.69	0.4	99.6	0.0	1.18	0.67	0.87	4.31	3.3	0.003	0.51	0.0	0.04	18.94	0.00	2.585	7.34	2.52	1.2	98.8	0.0	3.29	0.89	0.69	0.88	3.70	21432	2724	24	0	0	0	0	logfile

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