Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UMP	42381	2025-05-21	2023-10-18	2.92	3.27	3.11	3.3	0.007	0.74	0.0	0.04	19.06	0.01	2.226	7.20	0.69	0.4	99.6	0.0	1.18	0.67	0.87	4.31	3.3	0.003	0.51	0.0	0.04	18.94	0.00	2.585	7.34	2.52	1.2	98.8	0.0	3.29	0.89	0.69	0.88	3.70	21432	2724	24	0	0	0	0	logfile
✔	8WTD	37832	2025-05-10	2023-10-18	3.06	3.33	3.05	3.4	0.005	0.91	7.0	0.05	18.48	0.00	2.232	8.87	0.72	5.3	93.9	0.8	-0.02	0.53	0.80	1.75	3.4	0.003	0.57	0.0	0.04	18.05	0.00	2.570	6.42	2.31	4.6	95.3	0.1	0.25	0.97	0.59	0.84	2.56	6456	790	3	0	4	0	0	logfile
✔	8WSS	37823	2025-05-12	2023-10-17	3.01	2.86	2.94	3.1	0.002	0.70	0.0	0.04	9.95	0.00	2.082	6.49	0.43	2.3	97.7	0.0	1.40	0.71	0.83	2.49	3.1	0.003	0.59	0.0	0.04	14.56	0.00	2.473	6.89	2.67	3.4	96.5	0.1	0.75	0.63	0.72	0.86	3.20	8797	1143	6	0	0	0	0	logfile
✔	8UMC	42375	2025-05-11	2023-10-17	2.5	2.12	2.52	1.9	0.005	0.68	0.0	0.05	17.53	0.01	2.045	9.69	1.16	2.9	97.1	0.0	-0.80	0.82	0.81	3.65	1.8	0.005	0.68	0.0	0.05	18.01	0.01	2.138	9.76	3.49	2.8	97.2	0.0	0.10	0.38	0.82	0.81	3.19	7198	890	6	0	2	0	0	logfile
✔	8WST	37824	2025-05-11	2023-10-17	2.4	2.03	2.39	2.4	0.002	0.45	1.0	0.04	8.87	0.00	2.158	4.97	0.22	3.1	96.9	0.0	2.41	0.64	0.75	3.44	2.4	0.002	0.56	0.0	0.04	14.80	0.00	2.540	5.09	2.88	3.9	96.0	0.1	1.41	1.44	0.64	0.80	3.70	8286	1055	6	0	0	0	0	logfile
✔	8WS9	37802	2025-05-09	2023-10-17	3.78	2.32	3.75	1.8	0.004	0.72	0.0	0.04	23.81	0.01	2.245	11.08	4.02	10.2	89.4	0.4	-1.96	0.63	0.59	1.93	1.5	0.004	0.69	0.0	0.04	24.11	0.01	2.480	12.37	3.52	11.1	88.5	0.4	-1.28	2.04	0.64	0.60	3.14	2931	234	4	51	0	0	0	logfile
✔	8UMD	42376	2025-05-11	2023-10-17	3.6	4.61	3.59	3.7	0.003	0.72	0.0	0.04	16.78	0.01	2.098	13.27	0.50	4.9	94.8	0.3	0.54	0.50	0.80	0.85	3.7	0.003	0.71	0.0	0.04	17.25	0.00	2.495	10.74	3.26	3.9	95.8	0.3	0.67	1.75	0.51	0.84	0.77	7201	911	6	0	0	0	0	logfile
✔	8UMF	42378	2025-05-16	2023-10-17	2.9	3.41	2.93	3.2	0.005	0.80	0.0	0.05	19.05	0.01	2.087	4.93	0.00	3.1	96.9	0.0	-1.20	0.84	0.85	3.87	3.2	0.003	0.58	0.0	0.04	19.80	0.00	1.967	6.90	1.38	2.5	97.5	0.0	1.20	0.41	0.82	0.89	3.18	14804	1376	7	173	7	0	0	logfile
✔	8WSR	37822	2025-05-13	2023-10-17	2.99	2.42	3.08	2.2	0.005	0.84	2.0	0.06	17.39	0.01	1.124	6.73	1.45	2.7	97.3	0.0	-0.22	0.83	0.81	2.83	2.2	0.003	0.56	0.0	0.04	18.10	0.00	2.014	3.25	2.02	2.5	97.5	0.0	0.76	0.40	0.82	0.85	2.39	6475	789	4	0	8	0	0	logfile
✔	8WS7	37800	2025-05-09	2023-10-16	3.26	2.14	3.21	1.9	0.004	0.65	0.0	0.04	21.45	0.01	2.272	7.11	0.86	2.9	97.1	0.0	-1.30	0.73	0.71	4.70	1.9	0.004	0.64	0.0	0.04	21.73	0.01	2.491	7.60	4.74	2.5	97.5	0.0	-0.27	0.79	0.75	0.73	3.66	3333	279	4	54	0	0	0	logfile
✔	8UL9	42357	2025-05-10	2023-10-16	3.2	3.36	3.15	3.4	0.008	1.29	0.0	0.04	19.12	0.00	2.024	6.75	2.33	4.0	96.0	0.0	2.06	0.61	0.82	1.94	3.4	0.003	0.50	0.0	0.04	16.48	0.00	2.051	7.71	2.76	4.0	95.8	0.1	2.21	1.13	0.64	0.83	1.69	6674	774	5	0	14	1	0	logfile
✔	8WS6	37799	2025-05-09	2023-10-16	3.21	2.15	3.09	2.0	0.003	0.67	0.0	0.04	21.12	0.01	2.204	4.55	0.00	2.7	97.3	0.0	-1.69	0.73	0.72	3.28	1.9	0.003	0.57	0.0	0.04	22.08	0.01	2.527	6.22	1.21	2.7	97.3	0.0	0.06	0.77	0.75	0.74	2.21	3558	298	4	58	0	0	0	logfile
✔	8WRU	37790	2025-05-12	2023-10-16	3.14	2.09	3.14	1.6	0.004	0.67	0.0	0.04	19.20	0.00	2.204	10.54	0.56	5.5	94.5	0.0	-1.29	0.73	0.73	2.99	1.6	0.003	0.59	0.0	0.04	20.60	0.00	2.057	9.68	3.21	4.9	95.1	0.0	0.22	0.43	0.75	0.76	2.57	8686	831	4	90	0	0	0	logfile
✔	8WS5	37798	2025-05-09	2023-10-16	3.29	2.19	3.29	1.5	0.005	0.85	0.0	0.05	22.82	0.01	2.219	10.35	1.71	7.3	92.3	0.4	-1.93	0.67	0.61	1.93	1.5	0.004	0.64	0.0	0.04	23.09	0.01	2.462	9.18	1.71	8.8	90.9	0.4	-1.04	0.83	0.69	0.66	1.01	3770	282	4	74	0	0	0	logfile
✔	8WRR	37787	2025-05-10	2023-10-16	3.1	2.14	3.11	1.9	0.003	0.61	1.0	0.04	20.70	0.01	2.253	8.53	2.31	4.9	95.1	0.0	-0.53	0.76	0.75	3.17	2.0	0.004	0.61	0.0	0.04	21.41	0.01	2.528	5.69	3.15	5.6	94.4	0.0	0.23	0.79	0.76	0.78	2.13	5684	559	4	59	0	0	0	logfile
✔	8WRP	37785	2025-05-10	2023-10-16	2.83	2.07	2.78	1.7	0.004	0.61	0.0	0.04	21.67	0.01	2.254	8.00	0.00	3.8	96.2	0.0	0.48	0.74	0.73	2.67	1.7	0.004	0.64	0.0	0.04	22.90	0.01	2.517	6.82	2.41	4.3	95.5	0.2	1.25	0.80	0.78	0.79	1.77	6266	583	4	77	0	0	0	logfile
✔	8ULU	42366	2025-05-21	2023-10-16	3.8	4.18	3.91	4.1	0.006	0.87	0.0	0.05	19.20	0.00	2.075	15.17	0.57	6.4	93.5	0.1	-0.19	0.75	0.88	2.17	4.1	0.006	0.77	0.0	0.05	16.41	0.00	2.461	12.40	4.95	6.3	93.6	0.1	-0.26	0.88	0.75	0.88	2.03	22029	2649	52	0	102	0	0	logfile
✔	8WRV	37791	2025-05-10	2023-10-16	3.28	2.25	3.23	1.7	0.004	0.74	0.0	0.05	23.71	0.01	2.301	8.99	1.85	5.5	94.5	0.0	-1.76	0.70	0.67	2.48	1.4	0.006	0.70	0.0	0.04	23.81	0.01	2.495	11.36	1.48	7.5	92.5	0.0	-0.79	1.57	0.74	0.74	1.83	4471	316	4	92	0	0	0	logfile
✔	8ULS	42364	2025-05-21	2023-10-16	3.2	3.49	3.24	3.5	0.006	1.03	3.0	0.07	17.25	0.02	2.166	9.47	0.52	4.1	95.7	0.1	-0.87	0.68	0.82	3.32	3.5	0.003	0.66	0.0	0.05	14.66	0.00	2.445	6.92	1.55	4.1	95.9	0.0	-0.71	0.93	0.68	0.89	3.03	20959	2463	57	0	119	0	0	logfile
✔	8ULT	42365	2025-05-20	2023-10-16	3.8	4.17	3.91	4.1	0.005	0.73	0.0	0.05	14.07	0.01	2.176	10.14	0.00	3.3	96.7	0.0	-0.05	0.72	0.86	2.78	4.1	0.003	0.71	0.0	0.05	14.25	0.00	2.440	9.57	3.06	3.0	97.0	0.0	0.31	0.95	0.72	0.87	2.26	19757	2406	34	0	70	0	0	logfile

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