Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UL9	42357	2025-05-10	2023-10-16	3.2	3.36	3.15	3.4	0.008	1.29	0.0	0.04	19.12	0.00	2.024	6.75	2.33	4.0	96.0	0.0	2.06	0.61	0.82	1.94	3.4	0.003	0.50	0.0	0.04	16.48	0.00	2.051	7.71	2.76	4.0	95.8	0.1	2.21	1.13	0.64	0.83	1.69	6674	774	5	0	14	1	0	logfile
✔	8WS8	37801	2025-05-09	2023-10-16	2.96	2.00	2.93	1.6	0.004	0.70	0.0	0.04	22.75	0.01	2.253	7.46	0.81	7.1	92.9	0.0	-0.94	0.72	0.66	3.75	1.6	0.003	0.60	0.0	0.04	22.92	0.01	2.523	8.59	2.83	4.4	95.6	0.0	-0.43	0.30	0.73	0.70	2.74	3892	298	4	74	0	0	0	logfile
✔	8WRP	37785	2025-05-10	2023-10-16	2.83	2.07	2.78	1.7	0.004	0.61	0.0	0.04	21.67	0.01	2.254	8.00	0.00	3.8	96.2	0.0	0.48	0.74	0.73	2.67	1.7	0.004	0.64	0.0	0.04	22.90	0.01	2.517	6.82	2.41	4.3	95.5	0.2	1.25	0.80	0.78	0.79	1.77	6266	583	4	77	0	0	0	logfile
✔	8ULS	42364	2025-05-21	2023-10-16	3.2	3.49	3.24	3.5	0.006	1.03	3.0	0.07	17.25	0.02	2.166	9.47	0.52	4.1	95.7	0.1	-0.87	0.68	0.82	3.32	3.5	0.003	0.66	0.0	0.05	14.66	0.00	2.445	6.92	1.55	4.1	95.9	0.0	-0.71	0.93	0.68	0.89	3.03	20959	2463	57	0	119	0	0	logfile
✔	8WS7	37800	2025-05-09	2023-10-16	3.26	2.14	3.21	1.9	0.004	0.65	0.0	0.04	21.45	0.01	2.272	7.11	0.86	2.9	97.1	0.0	-1.30	0.73	0.71	4.70	1.9	0.004	0.64	0.0	0.04	21.73	0.01	2.491	7.60	4.74	2.5	97.5	0.0	-0.27	0.79	0.75	0.73	3.66	3333	279	4	54	0	0	0	logfile
✔	8WRo	37784	2025-05-27	2023-10-15	3.9	4.30	3.87	4.0	0.004	0.79	0.0	0.05	18.35	0.01	2.237	8.70	0.33	8.4	91.4	0.1	-2.06	0.79	0.69	0.35	4.0	0.004	0.68	0.0	0.04	18.29	0.00	2.462	13.32	2.93	7.5	92.5	0.0	-1.43	1.43	0.82	0.81	0.95	29807	3780	4	0	0	0	0	logfile
✔	8WRM	37781	2025-05-28	2023-10-15	4.34	4.58	4.53	4.2	0.004	0.89	0.0	0.05	14.47	0.01	2.196	7.52	0.03	8.4	91.5	0.1	-2.50	0.80	0.76	—	4.2	0.004	0.70	0.0	0.05	14.21	0.00	2.433	14.73	0.03	9.7	90.2	0.1	-1.75	1.27	0.81	0.79	—	29931	3793	4	0	0	0	0	logfile
✔	8WRL	37779	2025-05-10	2023-10-15	3.36	3.59	3.32	3.7	0.004	0.70	0.0	0.05	19.51	0.00	1.771	9.25	0.58	4.5	95.5	0.0	-0.27	0.54	0.77	1.66	3.7	0.003	0.54	0.0	0.04	17.46	0.00	2.395	7.35	3.75	4.1	95.9	0.0	0.41	0.33	0.53	0.78	1.59	6472	790	4	0	5	0	0	logfile
✔	8UKM	42355	2025-05-24	2023-10-14	4.2	4.65	4.49	4.5	0.004	0.75	0.0	0.05	13.15	0.01	2.220	21.35	0.00	4.5	95.5	0.0	0.17	0.81	0.81	—	4.5	0.003	0.74	0.0	0.05	13.36	0.01	2.495	14.60	0.00	4.2	95.8	0.0	0.38	0.56	0.82	0.81	—	26184	3528	24	0	0	0	0	logfile
✔	8WRH	37776	2025-05-10	2023-10-14	3.08	3.33	3.08	3.4	0.004	0.68	1.0	0.05	18.70	0.00	2.151	9.11	0.00	4.8	94.8	0.4	0.28	0.61	0.83	2.27	3.4	0.003	0.55	0.0	0.04	17.70	0.00	2.491	6.34	2.45	4.2	95.8	0.0	0.67	0.90	0.59	0.82	1.93	6459	790	3	0	4	0	0	logfile
✔	8WR4	37762	2025-05-28	2023-10-13	3.07	2.37	3.12	2.0	0.004	0.57	0.0	0.04	19.22	0.00	1.974	10.44	0.33	4.6	95.3	0.1	-0.06	0.66	0.71	1.72	2.1	0.003	0.60	0.0	0.04	20.07	0.00	2.158	7.52	1.70	4.5	95.4	0.1	0.09	0.53	0.71	0.73	1.83	30250	2922	10	282	2	0	0	logfile
✔	8WRE	37775	2025-05-10	2023-10-13	2.9	3.39	2.87	3.3	0.003	0.54	0.0	0.04	12.09	0.00	2.265	3.87	0.00	1.9	98.1	0.0	1.24	0.72	0.86	2.82	3.3	0.003	0.57	0.0	0.04	14.48	0.00	2.572	3.08	1.85	2.4	97.6	0.0	1.52	0.29	0.69	0.89	2.67	6328	829	4	0	1	0	0	logfile
✔	8QTZ	18655	2025-05-17	2023-10-13	4.27	3.73	3.62	4.0	0.004	0.86	1.0	0.05	13.81	0.01	2.065	21.72	0.05	11.0	88.7	0.3	-3.58	0.72	0.78	—	4.0	0.005	0.87	0.0	0.05	13.78	0.01	2.332	18.99	0.00	12.3	87.6	0.1	-3.42	0.72	0.72	0.80	—	16260	2067	3	0	0	0	0	logfile
✔	8WRD	37774	2025-05-10	2023-10-13	3.05	3.46	3.00	3.4	0.004	0.55	0.0	0.04	15.71	0.00	2.177	4.66	0.14	3.0	97.0	0.0	0.84	0.69	0.84	2.84	3.4	0.003	0.57	0.0	0.04	15.95	0.00	2.505	4.11	4.55	3.2	96.8	0.0	0.83	0.19	0.66	0.87	2.80	6326	830	3	0	0	0	0	logfile
✔	8QTV	18654	2025-05-10	2023-10-13	3.25	4.30	3.29	3.9	0.002	0.43	0.0	0.04	13.65	0.00	2.297	4.09	0.00	5.2	94.8	0.0	-0.99	0.86	0.86	3.40	4.0	0.004	0.64	0.0	0.04	14.15	0.00	2.288	6.14	2.86	4.9	95.1	0.0	-0.32	1.28	0.86	0.86	2.73	5054	662	4	0	2	0	0	logfile
✔	8QU6	18656	2025-05-29	2023-10-13	3.45	3.92	3.46	3.5	0.003	0.50	0.0	0.04	15.17	0.00	2.056	3.64	0.00	2.5	97.5	0.0	1.07	0.86	0.80	2.45	3.5	0.003	0.59	0.0	0.04	16.69	0.00	2.162	4.92	1.31	2.5	97.5	0.0	1.08	1.96	0.92	0.90	2.21	32464	4025	11	53	3	0	0	logfile
✔	8WQY	37758	2025-05-29	2023-10-12	3.0	3.36	3.34	3.4	0.006	0.59	2.0	0.04	14.61	0.00	1.893	3.66	1.01	1.1	98.9	0.0	-1.02	0.64	0.80	2.10	3.4	0.003	0.50	0.0	0.04	16.86	0.00	2.013	4.09	1.96	0.7	99.3	0.0	2.99	0.44	0.67	0.82	1.79	32860	3949	54	0	24	10	0	logfile
✔	8WR3	37761	2025-05-12	2023-10-12	3.1	3.32	3.11	3.4	0.005	0.92	0.0	0.05	20.75	0.01	2.136	5.95	0.57	3.4	96.5	0.1	-1.31	0.62	0.79	2.61	3.4	0.003	0.63	0.0	0.04	17.84	0.00	2.427	9.10	2.29	3.7	96.3	0.0	2.73	1.14	0.60	0.79	2.31	9022	1154	4	0	10	0	0	logfile
✔	8QTD	18649	2025-05-09	2023-10-12	3.6	3.77	3.57	3.7	0.002	0.49	0.0	0.04	9.32	0.00	2.298	6.23	2.63	4.5	95.5	0.0	0.45	0.56	0.79	3.01	3.7	0.003	0.62	0.0	0.04	13.53	0.00	2.440	7.35	2.63	4.2	95.8	0.0	-0.34	0.91	0.56	0.80	3.22	3219	413	3	0	0	0	0	logfile
✔	8QT7	18645	2025-05-09	2023-10-12	2.2	2.42	2.26	2.4	0.009	0.96	0.0	0.04	19.30	0.00	2.169	4.96	0.86	1.8	98.2	0.0	1.00	0.61	0.80	4.04	2.4	0.007	0.72	0.0	0.05	19.35	0.00	2.471	3.21	0.86	1.8	98.2	0.0	1.33	0.26	0.62	0.81	4.14	3516	399	2	0	4	65	0	logfile

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