Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WQY	37758	2025-05-29	2023-10-12	3.0	3.36	3.34	3.4	0.006	0.59	2.0	0.04	14.61	0.00	1.893	3.66	1.01	1.1	98.9	0.0	-1.02	0.64	0.80	2.10	3.4	0.003	0.50	0.0	0.04	16.86	0.00	2.013	4.09	1.96	0.7	99.3	0.0	2.99	0.44	0.67	0.82	1.79	32860	3949	54	0	24	10	0	logfile
✔	8WQP	37751	2025-05-10	2023-10-12	2.4	2.23	2.33	2.3	0.002	0.53	0.0	0.05	15.80	0.00	2.156	3.18	1.91	2.9	97.1	0.0	-0.22	0.62	0.77	4.69	2.3	0.003	0.55	0.0	0.05	15.82	0.00	2.472	3.18	2.46	4.0	96.0	0.0	-0.16	0.34	0.62	0.77	4.06	6842	452	2	0	14	0	3330	logfile
✔	8QT9	18646	2025-05-09	2023-10-12	2.36	2.58	2.36	2.6	0.005	0.68	0.0	0.04	20.32	0.00	2.158	5.55	0.58	1.3	98.7	0.0	0.58	0.62	0.80	3.59	2.6	0.005	0.65	0.0	0.04	19.26	0.00	2.566	4.67	2.31	2.3	97.7	0.0	1.41	0.17	0.61	0.80	3.76	3511	399	2	0	4	64	0	logfile
✔	8QT7	18645	2025-05-09	2023-10-12	2.2	2.42	2.26	2.4	0.009	0.96	0.0	0.04	19.30	0.00	2.169	4.96	0.86	1.8	98.2	0.0	1.00	0.61	0.80	4.04	2.4	0.007	0.72	0.0	0.05	19.35	0.00	2.471	3.21	0.86	1.8	98.2	0.0	1.33	0.26	0.62	0.81	4.14	3516	399	2	0	4	65	0	logfile
✔	8UKD	42352	2025-05-23	2023-10-12	2.9	3.06	2.92	3.1	0.006	0.85	0.0	0.06	14.07	0.01	2.280	2.78	0.04	4.7	95.3	0.0	-1.52	0.68	0.79	3.08	3.1	0.003	0.57	0.0	0.04	15.69	0.00	2.442	4.39	1.88	3.8	96.2	0.0	-0.05	0.35	0.72	0.85	3.00	24777	3123	6	0	27	0	0	logfile
✔	8QTB	18648	2025-05-10	2023-10-12	2.94	4.20	3.08	3.7	0.002	0.39	0.0	0.04	11.05	0.00	2.338	3.18	0.00	3.3	96.7	0.0	0.70	0.88	0.87	2.74	3.6	0.003	0.65	0.0	0.04	12.60	0.00	2.286	4.41	1.07	5.2	94.8	0.0	0.19	1.05	0.88	0.88	2.57	5050	662	4	0	2	0	0	logfile
✔	8QT6	18644	2025-05-09	2023-10-12	2.29	2.56	2.40	2.6	0.005	0.60	0.0	0.04	18.31	0.00	2.174	4.72	0.86	1.8	98.2	0.0	0.77	0.66	0.84	3.87	2.5	0.004	0.61	0.0	0.04	18.31	0.00	2.553	3.83	1.44	2.0	98.0	0.0	1.56	0.23	0.60	0.80	3.76	3466	399	2	0	3	63	0	logfile
✔	8QTD	18649	2025-05-09	2023-10-12	3.6	3.77	3.57	3.7	0.002	0.49	0.0	0.04	9.32	0.00	2.298	6.23	2.63	4.5	95.5	0.0	0.45	0.56	0.79	3.01	3.7	0.003	0.62	0.0	0.04	13.53	0.00	2.440	7.35	2.63	4.2	95.8	0.0	-0.34	0.91	0.56	0.80	3.22	3219	413	3	0	0	0	0	logfile
✘	8QTi	18650	2025-05-26	2023-10-12	3.09	3.56	3.10	3.2	0.002	0.49	0.0	0.04	16.37	0.00	1.928	3.55	0.04	3.3	96.7	0.0	0.91	0.88	0.83	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27858	3329	10	93	3	0	0	logfile
✔	8WR0	37759	2025-05-29	2023-10-12	3.1	3.46	3.46	3.4	0.006	0.58	0.0	0.04	14.39	0.00	1.919	4.11	0.81	1.1	98.9	0.0	-1.40	0.64	0.78	2.44	3.4	0.003	0.50	0.0	0.04	16.40	0.00	2.030	3.91	2.05	0.8	99.2	0.0	2.49	0.43	0.70	0.84	2.04	32841	3948	48	0	24	0	0	logfile
✔	8WR3	37761	2025-05-12	2023-10-12	3.1	3.32	3.11	3.4	0.005	0.92	0.0	0.05	20.75	0.01	2.136	5.95	0.57	3.4	96.5	0.1	-1.31	0.62	0.79	2.61	3.4	0.003	0.63	0.0	0.04	17.84	0.00	2.427	9.10	2.29	3.7	96.3	0.0	2.73	1.14	0.60	0.79	2.31	9022	1154	4	0	10	0	0	logfile
✔	8WQU	37754	2025-05-29	2023-10-12	2.8	3.03	2.98	19.0	0.010	0.75	24.0	0.07	14.54	0.00	2.074	3.25	0.03	1.8	98.2	0.0	-0.80	0.65	0.81	4.60	19.0	0.004	0.51	0.0	0.04	16.41	0.00	2.161	3.27	1.86	1.4	98.6	0.0	2.62	0.31	0.67	0.82	4.21	32736	3936	48	0	24	0	0	logfile
✔	8UKF	42353	2025-05-24	2023-10-12	3.1	3.23	3.07	3.2	0.006	0.83	0.0	0.06	14.34	0.01	2.279	2.98	0.00	4.1	95.9	0.0	-1.31	0.65	0.81	3.05	3.2	0.003	0.55	0.0	0.04	14.99	0.00	2.477	3.81	1.58	3.4	96.6	0.0	0.17	0.32	0.66	0.83	2.83	24964	3123	12	0	41	0	0	logfile
✔	8WQX	37757	2025-05-29	2023-10-12	3.2	3.45	3.31	19.0	0.005	0.51	0.0	0.04	14.74	0.00	2.012	4.14	0.68	0.6	99.4	0.0	-1.24	0.65	0.74	2.43	19.0	0.002	0.42	0.0	0.04	15.70	0.00	2.226	4.98	0.68	0.7	99.3	0.0	2.79	0.48	0.72	0.82	2.43	32726	3935	48	0	24	0	0	logfile
✔	8QSR	18640	2025-05-14	2023-10-11	2.56	2.17	2.57	2.6	0.004	0.57	0.0	0.04	10.42	0.00	2.160	4.50	0.34	1.8	98.2	0.0	1.81	0.73	0.69	2.56	2.1	0.004	0.60	0.0	0.04	13.70	0.01	2.376	6.03	0.68	2.8	97.2	0.0	1.82	1.23	0.75	0.73	2.96	11746	766	4	0	2	0	5938	logfile
✔	8QSQ	18639	2025-05-10	2023-10-11	3.7	4.53	6.20	3.8	0.004	0.52	0.0	0.04	10.95	0.00	2.268	4.09	1.15	3.2	96.8	0.0	-1.43	0.64	0.73	0.69	3.6	0.004	0.75	0.0	0.04	14.42	0.00	2.472	21.71	1.87	4.6	95.4	0.0	-0.60	2.41	0.64	0.74	0.69	6512	791	3	0	6	0	0	logfile
✔	8WQB	37737	2025-05-28	2023-10-11	3.37	3.62	3.41	3.6	0.004	0.65	0.0	0.04	14.73	0.00	2.043	7.37	0.00	5.9	94.1	0.0	-1.53	0.74	0.74	2.31	3.6	0.003	0.59	0.0	0.04	16.45	0.00	2.034	9.68	1.38	5.6	94.4	0.0	0.23	0.51	0.78	0.83	1.88	26255	3265	13	0	6	0	0	logfile
✔	8WQD	37740	2025-05-10	2023-10-11	3.55	3.74	3.53	3.7	0.004	0.62	0.0	0.04	14.56	0.01	2.266	8.72	0.00	6.9	93.1	0.0	-0.78	0.67	0.83	2.91	3.7	0.004	0.55	0.0	0.04	16.72	0.00	2.534	8.82	2.00	6.9	93.1	0.0	0.42	0.31	0.67	0.83	1.94	5046	641	2	0	0	0	0	logfile
✔	8WQF	37743	2025-05-26	2023-10-11	3.27	3.60	3.31	3.6	0.004	0.60	0.0	0.04	14.92	0.00	2.199	8.04	0.00	6.4	93.6	0.0	-0.93	0.60	0.57	2.34	3.6	0.003	0.59	0.0	0.04	16.78	0.00	2.503	10.18	1.46	5.6	94.4	0.0	-0.14	0.99	0.74	0.83	1.93	23404	2901	13	0	6	0	0	logfile
✔	8WQi	37746	2025-05-10	2023-10-11	3.5	3.71	3.52	3.7	0.003	0.62	0.0	0.04	14.51	0.00	2.188	9.29	0.00	10.2	89.8	0.0	-1.75	0.63	0.82	1.38	3.7	0.003	0.67	0.0	0.04	16.92	0.00	2.439	11.86	2.19	9.9	90.1	0.0	-0.60	0.54	0.65	0.81	0.91	5074	644	2	0	0	0	0	logfile

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