Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WQC	37739	2025-05-29	2023-10-11	3.54	3.77	3.57	3.7	0.003	0.58	0.0	0.04	14.71	0.00	2.135	9.58	0.07	5.6	94.4	0.0	-1.33	0.78	0.76	1.75	3.7	0.003	0.63	0.0	0.04	16.35	0.00	2.123	12.01	1.01	5.4	94.6	0.0	-0.42	0.96	0.78	0.78	1.49	26832	3393	14	0	6	0	0	logfile
✔	8WQE	37742	2025-05-29	2023-10-11	3.38	3.75	3.42	3.7	0.003	0.56	0.0	0.04	14.84	0.00	2.173	8.55	0.07	5.1	94.9	0.0	-0.73	0.72	0.71	2.00	3.7	0.005	0.61	0.0	0.04	16.56	0.00	2.041	10.13	1.90	5.2	94.8	0.0	-0.03	0.99	0.78	0.83	1.72	26301	3275	14	0	6	0	0	logfile
✔	8WQA	37736	2025-05-29	2023-10-11	3.39	3.69	3.48	3.6	0.003	0.64	0.0	0.04	14.89	0.00	2.059	9.55	0.14	4.9	95.1	0.0	-0.70	0.79	0.79	2.00	3.6	0.003	0.60	0.0	0.04	16.35	0.00	2.207	9.67	1.92	5.0	95.0	0.0	0.19	0.38	0.82	0.85	1.73	26479	3301	14	0	6	0	0	logfile
✔	8QSP	18638	2025-05-13	2023-10-11	3.69	4.52	3.84	4.1	0.002	0.49	0.0	0.04	14.96	0.00	2.209	10.55	0.00	4.2	95.8	0.0	-0.17	0.91	0.85	2.08	4.1	0.003	0.57	0.0	0.04	15.39	0.00	2.160	8.36	2.49	5.0	95.0	0.0	-0.02	0.45	0.91	0.85	1.99	10174	1333	8	0	4	0	0	logfile
✔	8WQF	37743	2025-05-26	2023-10-11	3.27	3.60	3.31	3.6	0.004	0.60	0.0	0.04	14.92	0.00	2.199	8.04	0.00	6.4	93.6	0.0	-0.93	0.60	0.57	2.34	3.6	0.003	0.59	0.0	0.04	16.78	0.00	2.503	10.18	1.46	5.6	94.4	0.0	-0.14	0.99	0.74	0.83	1.93	23404	2901	13	0	6	0	0	logfile
✔	8QSR	18640	2025-05-14	2023-10-11	2.56	2.17	2.57	2.6	0.004	0.57	0.0	0.04	10.42	0.00	2.160	4.50	0.34	1.8	98.2	0.0	1.81	0.73	0.69	2.56	2.1	0.004	0.60	0.0	0.04	13.70	0.01	2.376	6.03	0.68	2.8	97.2	0.0	1.82	1.23	0.75	0.73	2.96	11746	766	4	0	2	0	5938	logfile
✔	8WQH	37745	2025-05-28	2023-10-11	3.44	3.76	3.58	3.7	0.003	0.55	0.0	0.04	14.59	0.00	2.051	8.46	0.00	5.1	94.9	0.0	-0.88	0.78	0.81	2.08	3.7	0.004	0.62	0.0	0.04	16.35	0.00	2.004	11.35	1.61	5.6	94.4	0.0	-0.05	0.66	0.81	0.86	1.92	24811	3091	14	0	6	0	0	logfile
✔	8UiB	42291	2025-05-14	2023-10-10	3.21	3.49	3.22	3.5	0.006	0.92	4.0	0.06	15.06	0.01	2.018	10.10	0.84	7.1	92.9	0.0	-2.75	0.73	0.77	2.36	3.5	0.003	0.66	0.0	0.04	16.54	0.00	1.974	11.24	1.98	6.1	93.9	0.0	-0.83	0.28	0.74	0.79	1.64	11868	1533	4	0	2	0	0	logfile
✔	8Ui7	42287	2025-05-21	2023-10-10	4.2	4.65	4.35	4.2	0.004	0.97	0.0	0.05	14.14	0.01	1.992	10.65	0.04	3.4	96.6	0.0	-1.37	0.85	0.77	—	4.2	0.004	0.73	0.0	0.04	14.27	0.00	1.787	18.29	0.00	3.8	96.2	0.0	0.01	0.98	0.86	0.78	—	21831	2760	13	0	8	0	0	logfile
✔	8WPY	37726	2025-05-11	2023-10-10	3.02	2.32	3.01	2.1	0.003	0.51	0.0	0.04	10.49	0.00	2.208	3.63	0.65	2.7	97.3	0.0	0.14	0.76	0.79	3.69	2.0	0.003	0.61	0.0	0.04	13.53	0.00	2.418	5.15	2.17	3.2	96.8	0.0	-0.17	0.96	0.77	0.82	3.26	8408	1090	8	0	4	0	0	logfile
✔	8UiP	42301	2025-05-09	2023-10-10	4.3	2.81	4.20	5.6	0.004	0.79	0.0	0.04	16.55	0.01	2.087	25.91	0.00	13.1	86.9	0.0	-2.49	0.41	0.55	—	2.0	0.003	0.78	0.0	0.04	14.41	0.01	2.567	18.18	0.00	8.8	91.2	0.0	-2.36	1.60	0.41	0.50	—	2316	303	3	0	0	0	0	logfile
✔	8WQ0	37732	2025-05-25	2023-10-10	2.78	2.50	2.60	2.6	0.004	0.70	0.0	0.06	15.23	0.02	2.226	4.26	2.26	2.5	97.5	0.0	0.02	0.77	0.82	3.50	2.5	0.005	0.77	0.0	0.05	14.39	0.00	2.271	3.73	3.21	3.1	96.8	0.1	0.05	0.47	0.81	0.85	3.79	26750	3264	39	0	94	0	0	logfile
✔	8WPP	37722	2025-05-18	2023-10-10	3.1	3.23	3.06	3.2	0.005	0.84	0.0	0.05	17.00	0.01	2.245	5.50	0.06	3.0	97.0	0.0	-1.85	0.70	0.74	2.73	3.2	0.003	0.58	0.0	0.04	18.23	0.00	2.402	11.12	1.20	2.6	97.4	0.0	0.29	0.47	0.72	0.81	2.77	16826	1909	9	69	0	0	0	logfile
✔	8WPW	37725	2025-05-13	2023-10-10	2.49	2.20	2.52	1.8	0.003	0.51	0.0	0.04	9.27	0.01	2.131	4.50	1.63	3.2	96.6	0.2	0.00	0.80	0.82	4.52	1.8	0.003	0.63	0.0	0.04	13.64	0.01	2.492	5.06	3.27	3.7	96.2	0.2	-0.01	0.94	0.83	0.85	3.87	9930	1294	8	0	3	0	0	logfile
✔	8QSM	18636	2025-05-09	2023-10-10	3.69	4.23	3.48	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.92	0.0	0.04	15.64	0.00	2.470	13.55	2.68	3.7	96.3	0.0	1.68	1.84	0.56	0.77	1.02	3579	464	1	0	0	0	0	logfile
✘	8WPK	37717	2025-05-18	2023-10-10	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16854	1909	11	70	1	0	0	logfile
✔	8UiC	42292	2025-05-13	2023-10-10	3.54	3.85	3.65	3.9	0.007	0.97	1.0	0.06	16.03	0.00	2.082	6.84	1.99	9.2	90.8	0.0	-1.75	0.71	0.80	1.94	3.9	0.003	0.66	0.0	0.04	17.34	0.00	2.213	8.23	3.43	7.5	92.5	0.0	-0.26	0.41	0.73	0.81	1.58	9971	1227	3	0	2	0	0	logfile
✔	8QSL	18635	2025-05-12	2023-10-10	2.81	3.65	2.99	3.5	0.013	0.67	0.0	0.04	15.58	0.00	1.968	13.05	0.12	8.7	91.3	0.0	1.51	0.61	0.78	1.49	3.5	0.004	0.92	0.0	0.05	15.78	0.00	2.453	10.69	2.32	7.4	92.6	0.0	1.02	1.19	0.58	0.77	1.31	8506	1046	4	0	16	0	0	logfile
✔	8UiR	42302	2025-05-24	2023-10-10	3.2	3.38	3.20	3.4	0.004	0.75	0.0	0.05	14.13	0.01	2.307	2.38	0.04	4.0	96.0	0.0	-1.30	0.71	0.82	2.71	3.4	0.004	0.62	0.0	0.05	14.94	0.00	2.481	3.34	1.34	3.7	96.3	0.0	-0.12	1.15	0.71	0.84	2.65	24879	3105	15	0	48	0	0	logfile
✔	8Uii	42295	2025-05-21	2023-10-10	3.04	3.25	3.09	3.3	0.003	0.76	0.0	0.05	16.55	0.01	2.061	7.23	0.70	2.5	97.5	0.0	-1.06	0.72	0.79	2.15	3.2	0.003	0.58	0.0	0.04	16.89	0.00	1.958	9.31	3.27	2.3	97.7	0.0	0.42	0.31	0.73	0.80	2.07	21704	2743	13	0	9	0	0	logfile

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