Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UiB	42291	2025-05-14	2023-10-10	3.21	3.49	3.22	3.5	0.006	0.92	4.0	0.06	15.06	0.01	2.018	10.10	0.84	7.1	92.9	0.0	-2.75	0.73	0.77	2.36	3.5	0.003	0.66	0.0	0.04	16.54	0.00	1.974	11.24	1.98	6.1	93.9	0.0	-0.83	0.28	0.74	0.79	1.64	11868	1533	4	0	2	0	0	logfile
✔	8UiD	42293	2025-05-17	2023-10-10	2.81	2.98	2.84	3.0	0.013	1.90	20.0	0.11	15.02	0.02	1.749	2.34	4.05	6.3	93.7	0.0	-1.38	0.74	0.81	5.05	3.0	0.004	0.67	0.0	0.05	17.01	0.00	2.488	8.57	3.35	5.4	94.6	0.0	-0.44	1.43	0.74	0.86	4.16	15638	1930	4	0	0	0	0	logfile
✔	8Ui7	42287	2025-05-21	2023-10-10	4.2	4.65	4.35	4.2	0.004	0.97	0.0	0.05	14.14	0.01	1.992	10.65	0.04	3.4	96.6	0.0	-1.37	0.85	0.77	—	4.2	0.004	0.73	0.0	0.04	14.27	0.00	1.787	18.29	0.00	3.8	96.2	0.0	0.01	0.98	0.86	0.78	—	21831	2760	13	0	8	0	0	logfile
✔	8QSN	18637	2025-05-09	2023-10-10	3.54	4.23	3.48	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.91	0.0	0.05	15.75	0.00	2.482	15.76	2.95	3.5	96.5	0.0	1.66	1.46	0.56	0.77	1.37	3579	464	1	0	0	0	0	logfile
✔	8WPW	37725	2025-05-13	2023-10-10	2.49	2.20	2.52	1.8	0.003	0.51	0.0	0.04	9.27	0.01	2.131	4.50	1.63	3.2	96.6	0.2	0.00	0.80	0.82	4.52	1.8	0.003	0.63	0.0	0.04	13.64	0.01	2.492	5.06	3.27	3.7	96.2	0.2	-0.01	0.94	0.83	0.85	3.87	9930	1294	8	0	3	0	0	logfile
✔	8UiP	42301	2025-05-09	2023-10-10	4.3	2.81	4.20	5.6	0.004	0.79	0.0	0.04	16.55	0.01	2.087	25.91	0.00	13.1	86.9	0.0	-2.49	0.41	0.55	—	2.0	0.003	0.78	0.0	0.04	14.41	0.01	2.567	18.18	0.00	8.8	91.2	0.0	-2.36	1.60	0.41	0.50	—	2316	303	3	0	0	0	0	logfile
✔	8UiR	42302	2025-05-24	2023-10-10	3.2	3.38	3.20	3.4	0.004	0.75	0.0	0.05	14.13	0.01	2.307	2.38	0.04	4.0	96.0	0.0	-1.30	0.71	0.82	2.71	3.4	0.004	0.62	0.0	0.05	14.94	0.00	2.481	3.34	1.34	3.7	96.3	0.0	-0.12	1.15	0.71	0.84	2.65	24879	3105	15	0	48	0	0	logfile
✔	8QSM	18636	2025-05-09	2023-10-10	3.69	4.23	3.48	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.92	0.0	0.04	15.64	0.00	2.470	13.55	2.68	3.7	96.3	0.0	1.68	1.84	0.56	0.77	1.02	3579	464	1	0	0	0	0	logfile
✔	8WPP	37722	2025-05-18	2023-10-10	3.1	3.23	3.06	3.2	0.005	0.84	0.0	0.05	17.00	0.01	2.245	5.50	0.06	3.0	97.0	0.0	-1.85	0.70	0.74	2.73	3.2	0.003	0.58	0.0	0.04	18.23	0.00	2.402	11.12	1.20	2.6	97.4	0.0	0.29	0.47	0.72	0.81	2.77	16826	1909	9	69	0	0	0	logfile
✔	8WPM	37719	2025-05-21	2023-10-10	3.43	3.65	3.46	3.7	0.005	0.80	0.0	0.04	16.53	0.01	2.233	5.65	0.46	2.7	97.3	0.0	-0.26	0.67	0.82	1.33	3.7	0.005	0.63	0.0	0.04	16.92	0.00	2.210	8.67	1.95	3.1	96.9	0.0	1.89	0.41	0.67	0.83	1.34	22034	2685	8	0	11	0	0	logfile
✔	8Ui2	42286	2025-05-24	2023-10-09	2.73	3.05	2.89	3.1	0.004	0.52	0.0	0.04	17.61	0.01	2.187	5.03	1.35	3.5	96.5	0.0	-0.39	0.70	0.83	2.89	3.1	0.004	0.60	0.0	0.04	18.23	0.01	2.572	3.83	2.29	2.8	97.2	0.0	0.38	1.12	0.62	0.78	2.84	26568	3492	24	0	0	0	0	logfile
✔	8WP9	37713	2025-05-21	2023-10-09	2.49	2.89	2.62	2.9	0.005	0.95	0.0	0.06	15.19	0.01	2.315	2.53	1.00	0.9	99.1	0.0	1.51	0.64	0.73	1.41	2.8	0.004	0.68	0.0	0.05	18.47	0.00	2.631	3.72	2.71	1.2	98.8	0.0	2.33	1.74	0.71	0.88	2.70	21432	2760	24	0	0	0	0	logfile
✔	8UHE	42278	2025-05-25	2023-10-09	2.78	2.06	2.94	2.1	0.010	1.17	0.0	0.06	19.11	0.01	2.105	13.49	4.23	2.9	96.9	0.2	-0.61	0.60	0.61	1.53	2.1	0.007	0.76	0.0	0.04	19.09	0.01	2.416	16.48	4.05	3.4	96.4	0.2	1.16	0.64	0.61	0.64	1.44	27048	3369	37	0	19	0	0	logfile
✔	8QRQ	18623	2025-05-09	2023-10-09	2.74	3.15	2.36	3.1	0.003	0.50	0.0	0.04	13.40	0.00	2.246	5.20	0.91	1.5	98.5	0.0	2.09	0.42	0.82	3.62	3.1	0.003	0.51	0.0	0.04	14.43	0.00	2.259	5.04	1.83	1.7	98.3	0.0	3.05	0.92	0.43	0.83	3.80	3092	415	2	0	3	0	0	logfile
✔	8QRS	18625	2025-05-09	2023-10-09	2.86	3.25	2.71	3.2	0.003	0.53	0.0	0.04	12.98	0.01	2.208	6.77	0.31	1.7	98.3	0.0	1.87	0.47	0.86	4.45	3.2	0.003	0.55	0.0	0.04	14.67	0.00	2.548	5.35	2.45	0.7	99.3	0.0	3.17	0.36	0.46	0.85	3.26	3093	416	2	0	0	0	0	logfile
✔	8QRW	18628	2025-05-09	2023-10-09	3.0	3.23	2.92	3.2	0.002	0.50	0.0	0.03	13.75	0.00	2.188	4.07	0.00	1.2	98.8	0.0	2.07	0.53	0.85	2.97	3.2	0.003	0.61	0.0	0.04	15.30	0.00	2.343	4.38	1.83	1.0	99.0	0.0	2.55	0.33	0.48	0.82	2.83	3111	419	2	0	1	0	0	logfile
✘	8QRV	18627	2025-05-09	2023-10-09	2.9	3.28	2.88	3.2	0.004	0.57	0.0	0.04	14.31	0.00	2.373	6.73	0.61	1.2	98.8	0.0	2.08	0.55	0.83	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3111	419	2	0	1	0	0	logfile
✔	8UHF	42279	2025-05-14	2023-10-09	3.8	3.77	—	1.7	0.002	0.50	0.0	0.04	12.21	0.00	2.126	10.07	0.00	3.0	97.0	0.0	-1.49	0.62	0.79	0.57	1.6	0.004	0.88	0.0	0.04	16.05	0.00	2.417	20.18	2.15	4.9	95.1	0.0	-0.19	1.23	0.63	0.81	0.60	12411	1739	9	0	0	0	0	logfile
✔	8QRU	18626	2025-05-09	2023-10-09	2.9	3.28	2.74	3.2	0.003	0.52	0.0	0.04	13.62	0.01	2.257	6.45	0.61	2.0	98.0	0.0	1.76	0.50	0.88	4.30	3.2	0.003	0.66	0.0	0.04	15.47	0.01	2.533	7.71	1.83	1.0	99.0	0.0	1.94	0.94	0.50	0.88	3.58	3093	416	2	0	0	0	0	logfile
✔	8UHW	42284	2025-05-28	2023-10-09	3.28	2.68	3.23	3.2	0.003	0.59	0.0	0.04	14.64	0.00	2.216	5.86	0.09	4.8	95.2	0.0	0.30	0.53	0.82	2.98	3.2	0.002	0.53	0.0	0.04	16.62	0.00	2.097	5.69	1.96	4.6	95.4	0.0	0.75	0.92	0.54	0.84	2.61	30788	3994	11	0	5	0	0	logfile

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