Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QRQ	18623	2025-05-09	2023-10-09	2.74	3.15	2.36	3.1	0.003	0.50	0.0	0.04	13.40	0.00	2.246	5.20	0.91	1.5	98.5	0.0	2.09	0.42	0.82	3.62	3.1	0.003	0.51	0.0	0.04	14.43	0.00	2.259	5.04	1.83	1.7	98.3	0.0	3.05	0.92	0.43	0.83	3.80	3092	415	2	0	3	0	0	logfile
✔	8QRR	18624	2025-05-09	2023-10-09	2.78	3.20	2.63	3.1	0.003	0.49	0.0	0.04	14.32	0.01	2.234	5.92	1.21	1.4	98.6	0.0	2.25	0.53	0.89	3.31	3.1	0.003	0.54	0.0	0.04	14.57	0.00	2.210	6.54	1.21	0.7	99.3	0.0	3.02	0.26	0.52	0.89	3.11	3129	421	2	0	3	0	0	logfile
✔	8Ui2	42286	2025-05-24	2023-10-09	2.73	3.05	2.89	3.1	0.004	0.52	0.0	0.04	17.61	0.01	2.187	5.03	1.35	3.5	96.5	0.0	-0.39	0.70	0.83	2.89	3.1	0.004	0.60	0.0	0.04	18.23	0.01	2.572	3.83	2.29	2.8	97.2	0.0	0.38	1.12	0.62	0.78	2.84	26568	3492	24	0	0	0	0	logfile
✔	8WP2	37708	2025-05-28	2023-10-08	3.3	2.44	—	2.0	0.009	0.78	1.0	0.04	20.04	0.01	2.114	17.36	0.23	7.6	92.2	0.3	-2.50	0.75	0.64	0.59	1.9	0.004	0.77	0.0	0.05	20.56	0.01	2.127	17.02	4.86	9.0	90.7	0.3	-2.45	1.23	0.77	0.67	0.72	31544	3496	16	150	0	0	0	logfile
✔	8WP0	37705	2025-05-12	2023-10-08	3.4	3.57	3.31	3.5	0.006	1.11	2.0	0.06	11.22	0.01	1.932	2.88	0.00	7.8	92.2	0.0	-6.50	0.67	0.82	3.23	3.5	0.004	0.72	0.0	0.04	14.74	0.01	2.027	5.34	1.74	7.3	92.7	0.0	-2.93	0.66	0.66	0.85	2.31	9372	1217	2	0	4	0	0	logfile
✔	8WP1	37707	2025-05-11	2023-10-08	3.15	3.42	3.18	3.4	0.004	0.59	1.0	0.04	16.53	0.00	2.208	14.72	0.37	5.3	94.7	0.0	0.33	0.67	0.87	2.24	3.4	0.002	0.44	0.0	0.04	17.11	0.00	2.257	15.88	3.61	5.3	94.7	0.0	1.34	0.26	0.65	0.88	2.29	7328	922	5	0	1	1	2	logfile
✔	8WoX	37701	2025-05-10	2023-10-08	2.75	2.45	3.22	2.2	0.005	0.54	0.0	0.04	13.94	0.00	2.099	4.19	0.00	4.3	95.7	0.0	0.02	0.77	0.83	3.39	2.2	0.003	0.60	0.0	0.04	16.26	0.00	2.102	4.03	2.06	3.4	96.6	0.0	0.66	0.49	0.77	0.83	2.85	6348	782	4	0	2	0	0	logfile
✘	8UHB	42268	2025-05-18	2023-10-08	3.35	4.22	3.35	3.8	0.004	0.62	0.0	0.04	14.11	0.00	2.015	9.46	0.00	5.9	94.1	0.0	-1.42	0.70	0.72	2.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16561	1075	6	0	1	0	8144	logfile
✔	8WoZ	37703	2025-05-10	2023-10-08	3.25	2.47	3.31	2.2	0.005	0.70	1.0	0.04	16.32	0.01	2.147	10.00	0.15	5.8	94.2	0.0	-0.58	0.75	0.72	1.58	2.2	0.003	0.62	0.0	0.04	17.21	0.00	2.539	6.89	1.93	4.5	95.5	0.0	0.09	0.44	0.75	0.73	1.27	6244	768	3	0	1	0	0	logfile
✔	8Woo	37694	2025-05-13	2023-10-07	3.9	4.05	3.88	4.0	0.007	1.14	7.0	0.08	13.30	0.01	2.237	6.21	0.00	7.3	92.7	0.0	-6.18	0.64	0.81	2.72	4.0	0.003	0.72	0.0	0.04	15.26	0.00	2.050	6.42	2.14	6.7	93.3	0.0	-2.46	0.82	0.65	0.81	1.35	9412	1217	2	0	5	0	0	logfile
✔	8WoQ	37695	2025-05-14	2023-10-07	2.85	3.57	2.89	3.4	0.004	0.83	0.0	0.05	15.76	0.01	2.046	7.66	3.96	4.8	95.1	0.1	1.00	0.65	0.84	3.05	3.4	0.005	0.79	0.0	0.05	14.92	0.00	1.944	6.56	2.07	5.0	95.0	0.0	1.18	0.89	0.65	0.84	3.12	11218	1294	10	0	35	4	0	logfile
✔	8QRH	18614	2025-05-15	2023-10-07	3.6	3.69	3.46	3.7	0.003	0.72	0.0	0.05	12.21	0.01	2.255	2.66	0.00	3.6	96.4	0.0	-0.83	0.58	0.81	2.89	3.7	0.003	0.75	0.0	0.04	14.82	0.00	2.488	7.01	1.57	4.1	95.9	0.0	-0.01	0.73	0.59	0.82	2.40	12951	1689	9	0	3	0	0	logfile
✔	8WoN	37693	2025-05-20	2023-10-07	2.69	2.85	2.71	2.9	0.007	0.79	0.0	0.06	16.53	0.01	2.212	7.48	0.44	5.7	94.3	0.0	-0.08	0.71	0.81	3.36	2.9	0.003	0.60	0.0	0.05	17.37	0.01	2.339	5.26	1.88	5.0	95.0	0.0	0.54	0.58	0.69	0.84	2.72	20720	2650	10	0	0	0	0	logfile
✔	8WoM	37692	2025-05-12	2023-10-07	3.5	3.76	3.52	3.7	0.005	1.04	5.0	0.07	11.19	0.01	1.004	3.36	0.00	9.1	90.9	0.0	-6.42	0.66	0.82	2.93	3.7	0.004	0.67	0.0	0.04	13.88	0.00	2.480	4.69	1.73	6.8	93.2	0.0	-2.73	0.73	0.66	0.82	1.83	9348	1217	2	0	1	0	0	logfile
✔	8Woi	37690	2025-05-12	2023-10-07	3.4	3.58	3.34	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.002	0.65	0.0	0.04	13.82	0.00	2.460	4.33	1.02	7.2	92.8	0.0	-2.90	0.62	0.68	0.85	2.81	9324	1217	1	0	0	0	0	logfile
✔	8WoG	37686	2025-05-11	2023-10-07	2.97	3.33	3.06	3.3	0.004	0.50	0.0	0.04	16.62	0.00	1.844	15.62	2.96	3.7	96.3	0.0	0.49	0.62	0.87	2.87	3.3	0.003	0.46	0.0	0.04	16.89	0.00	2.353	14.80	4.19	4.5	95.5	0.0	1.40	0.26	0.61	0.87	2.57	7384	929	5	0	1	1	2	logfile
✔	8WoT	37698	2025-05-13	2023-10-07	3.18	3.73	3.20	3.7	0.003	0.55	0.0	0.04	17.95	0.00	2.020	30.44	0.27	5.3	94.7	0.0	1.30	0.67	0.84	2.00	3.7	0.009	0.77	0.0	0.05	16.55	0.00	2.305	8.45	2.83	5.4	94.4	0.2	0.41	0.89	0.67	0.84	2.23	10672	1272	8	0	22	0	0	logfile
✔	8WoR	37696	2025-05-14	2023-10-07	2.66	3.15	2.74	3.2	0.004	0.64	0.0	0.04	15.74	0.01	1.928	22.33	5.08	3.5	96.4	0.2	1.60	0.56	0.78	2.67	3.1	0.003	0.67	0.0	0.04	15.07	0.00	1.973	5.55	2.84	4.2	95.8	0.0	1.28	0.90	0.63	0.83	2.87	11218	1294	10	0	35	4	0	logfile
✔	8WoS	37697	2025-05-13	2023-10-07	3.37	3.88	3.39	3.8	0.003	0.59	0.0	0.04	18.35	0.00	1.943	39.41	0.35	6.4	93.6	0.0	1.07	0.65	0.80	1.91	3.8	0.007	0.80	0.0	0.05	17.27	0.00	2.319	9.15	3.27	6.1	93.9	0.1	0.41	0.93	0.65	0.80	2.00	10672	1272	8	0	22	0	0	logfile
✔	8WNW	37674	2025-05-09	2023-10-06	3.5	3.04	3.38	3.4	0.025	1.77	2.0	0.11	13.59	0.01	2.500	4.92	2.31	1.8	98.2	0.0	2.30	0.43	0.69	2.59	3.2	0.022	0.63	0.0	0.04	15.58	0.00	2.402	8.79	4.62	1.8	98.2	0.0	2.28	1.30	0.49	0.76	3.05	1400	173	2	0	3	1	0	logfile

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