Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8WJ0	37574	2025-05-16	2023-09-25	2.24	2.40	2.24	2.5	0.078	1.72	18.0	0.10	18.81	0.03	0.000	12.28	13.66	1.1	98.9	0.0	-1.94	0.57	0.71	3.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14370	1698	36	0	24	888	0	logfile
✔	8UC1	42112	2025-05-13	2023-09-25	3.4	3.74	3.41	3.8	0.005	0.72	0.0	0.05	14.10	0.01	2.220	15.14	0.71	4.2	95.8	0.0	1.30	0.66	0.76	2.67	3.8	0.003	0.58	0.0	0.04	15.10	0.00	2.597	8.36	3.35	3.8	96.1	0.2	1.67	0.38	0.59	0.79	2.31	10310	1336	4	0	2	0	0	logfile
✘	8UBX	42108	2025-05-10	2023-09-25	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6757	419	2	0	4	68	3328	logfile
✔	8UC3	42114	2025-05-10	2023-09-25	2.78	3.15	2.79	3.1	0.006	0.92	0.0	0.05	16.35	0.01	2.115	12.15	1.78	4.0	96.0	0.0	0.37	0.52	0.72	1.94	3.1	0.003	0.62	0.0	0.04	16.78	0.01	2.590	5.67	2.44	2.9	97.1	0.0	1.76	1.35	0.48	0.72	1.59	4304	556	6	0	2	0	0	logfile
✔	8QN7	18509	2025-05-09	2023-09-25	2.7	2.38	2.17	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.6	0.003	0.52	0.0	0.05	18.43	0.00	2.686	2.83	2.76	6.7	93.3	0.0	-3.32	1.19	0.43	0.92	6.17	1455	190	5	0	0	0	0	logfile
✘	8WiY	37572	2025-05-17	2023-09-25	2.31	2.56	2.32	2.6	0.116	1.71	0.0	0.10	19.56	0.02	0.000	10.57	11.25	2.5	97.5	0.0	-1.41	0.56	0.70	4.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15486	1722	36	0	24	1248	0	logfile
✔	8UBV	42106	2025-05-10	2023-09-25	4.1	4.24	4.03	4.1	0.005	1.00	0.0	0.05	17.20	0.00	1.956	24.13	3.88	16.0	83.9	0.1	-3.69	0.64	0.57	—	4.1	0.004	0.83	0.0	0.05	17.29	0.00	2.400	16.14	3.75	13.7	86.3	0.0	-3.37	1.24	0.65	0.55	—	6603	852	4	0	0	0	0	logfile
✔	8WJ3	37577	2025-05-22	2023-09-25	3.36	3.68	3.46	3.7	0.006	0.60	0.0	0.04	12.89	0.00	1.975	10.24	0.08	5.5	94.4	0.0	-1.82	0.66	0.68	1.85	3.7	0.003	0.65	0.0	0.05	15.41	0.00	1.998	8.30	2.00	4.6	95.4	0.0	-1.08	0.58	0.67	0.70	1.26	22648	2972	8	0	6	0	0	logfile
✘	8WiX	37571	2025-05-16	2023-09-25	2.29	2.42	2.29	2.4	0.119	1.75	0.0	0.10	18.64	0.02	0.000	8.78	9.17	2.8	96.8	0.4	-1.63	0.58	0.74	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14940	1722	36	0	24	702	0	logfile
✔	8WiS	37567	2025-05-14	2023-09-25	2.78	2.99	2.83	3.4	0.004	0.71	0.0	0.05	19.08	0.00	2.228	4.90	0.00	2.6	97.4	0.0	-0.26	0.44	0.65	2.76	3.3	0.006	0.97	1.0	0.06	15.85	0.00	1.838	4.42	2.73	3.4	96.6	0.0	-0.73	0.77	0.63	0.81	3.26	11616	1437	15	0	42	0	0	logfile
✔	8QN8	18511	2025-05-27	2023-09-25	3.14	3.52	3.20	3.1	0.003	0.50	0.0	0.04	13.60	0.00	1.991	4.58	0.00	3.2	96.8	0.0	0.74	0.87	0.80	2.97	3.1	0.005	0.60	0.0	0.04	15.28	0.00	1.978	5.89	1.34	3.4	96.6	0.0	0.87	1.04	0.91	0.89	2.71	29410	3792	9	0	3	0	0	logfile
✔	8UC0	42111	2025-05-10	2023-09-25	2.42	2.96	2.44	2.8	0.002	0.47	0.0	0.03	13.63	0.00	2.018	5.07	0.84	1.2	98.8	0.0	3.55	0.71	0.89	3.69	2.8	0.003	0.53	0.0	0.04	13.81	0.00	2.474	2.17	0.84	2.6	97.4	0.0	3.47	0.91	0.64	0.88	3.75	6861	422	2	0	3	102	3375	logfile
✔	8UC8	42117	2025-05-16	2023-09-25	3.0	3.11	2.86	3.1	0.013	1.84	0.0	0.09	15.10	0.01	2.197	5.40	0.60	3.8	96.2	0.0	-1.40	0.59	0.71	5.06	3.1	0.003	0.57	0.0	0.04	15.38	0.00	2.592	9.33	0.97	1.7	98.3	0.0	1.53	1.23	0.73	0.82	3.76	14804	1936	8	0	16	0	0	logfile
✔	8UC7	42116	2025-05-16	2023-09-25	2.9	3.13	2.84	3.1	0.015	1.75	4.0	0.09	13.19	0.01	2.560	2.24	0.00	1.7	98.3	0.0	-0.57	0.61	0.79	6.07	3.1	0.003	0.55	0.0	0.04	15.44	0.00	2.629	5.91	0.52	1.7	98.3	0.0	2.19	1.26	0.73	0.87	4.87	14840	1936	8	0	16	0	0	logfile
✔	8UBZ	42110	2025-05-10	2023-09-25	3.02	3.57	3.01	3.4	0.002	0.48	0.0	0.03	15.41	0.01	2.043	4.55	0.28	1.5	98.5	0.0	3.77	0.64	0.82	2.95	3.5	0.004	0.56	0.0	0.04	15.14	0.00	2.505	7.20	1.99	2.9	97.1	0.0	3.12	0.78	0.60	0.83	2.32	6674	415	2	0	4	26	3315	logfile
✔	8WiV	37569	2025-05-22	2023-09-25	3.41	3.68	3.49	3.7	0.008	0.65	0.0	0.05	12.55	0.00	1.285	10.64	0.04	7.9	92.0	0.0	-1.85	0.68	0.72	1.80	3.7	0.003	0.64	0.0	0.05	15.56	0.00	1.949	7.53	2.44	4.4	95.6	0.0	-1.04	1.22	0.69	0.74	1.30	22622	2944	9	0	8	0	0	logfile
✘	8WJ1	37575	2025-05-16	2023-09-25	2.27	2.40	2.28	2.5	0.076	1.75	12.0	0.10	18.98	0.03	0.000	10.88	14.10	1.1	98.6	0.4	-1.89	0.56	0.71	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14196	1698	36	0	24	738	0	logfile
✘	8WJG	37579	2025-05-09	2023-09-25	3.0	3.18	2.96	3.3	0.005	1.21	0.0	0.06	15.28	0.01	2.211	6.71	2.03	2.6	97.4	0.0	0.84	0.51	0.73	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3952	533	1	0	0	0	0	logfile
✔	8UBY	42109	2025-05-10	2023-09-25	2.67	3.13	2.68	3.0	0.002	0.47	0.0	0.03	14.53	0.01	2.118	4.08	0.56	1.7	98.3	0.0	3.72	0.67	0.88	4.26	3.0	0.004	0.52	0.0	0.03	14.89	0.00	2.545	3.78	1.69	2.2	97.8	0.0	3.78	0.89	0.61	0.87	3.35	6756	419	2	0	4	46	3345	logfile
✘	8QN6	18508	2025-05-28	2023-09-25	2.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32010	4180	110	0	0	0	0	logfile

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