Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Wi3	37556	2025-05-13	2023-09-24	3.38	3.85	3.52	3.8	0.004	0.68	0.0	0.04	17.11	0.00	2.187	6.04	0.38	6.6	93.3	0.1	1.08	0.63	0.76	0.50	3.8	0.004	0.64	0.0	0.04	17.62	0.00	2.453	4.53	3.85	7.1	92.8	0.2	1.29	0.34	0.63	0.80	0.52	9489	1208	1	0	0	0	0	logfile
✔	8UBR	42101	2025-05-12	2023-09-24	2.7	2.07	2.73	2.6	0.006	0.83	0.0	0.06	17.61	0.00	1.887	3.81	0.10	1.8	98.2	0.0	0.76	0.61	0.83	2.22	2.6	0.002	0.50	0.0	0.04	17.91	0.00	2.028	3.55	2.17	1.4	98.6	0.0	2.44	0.80	0.61	0.84	2.66	9440	1156	2	0	9	4	0	logfile
✔	8Wi5	37558	2025-05-13	2023-09-24	3.46	3.75	3.43	3.7	0.002	0.47	0.0	0.04	16.84	0.01	2.198	6.30	0.47	2.3	97.7	0.0	2.62	0.54	0.62	0.66	3.7	0.003	0.56	0.0	0.04	17.19	0.00	2.342	5.39	2.35	3.0	97.0	0.0	1.92	0.55	0.64	0.78	1.52	9735	1242	2	0	0	0	0	logfile
✔	8Wi2	37555	2025-05-13	2023-09-24	4.06	4.53	4.14	4.3	0.003	0.66	0.0	0.04	17.70	0.00	2.106	11.61	0.67	3.1	96.9	0.0	2.17	0.67	0.79	—	4.3	0.004	0.67	0.0	0.04	14.28	0.00	2.508	9.80	0.00	3.4	96.6	0.0	1.86	1.34	0.69	0.79	—	9537	1214	2	0	0	0	0	logfile
✔	8Wi4	37557	2025-05-13	2023-09-24	3.2	3.46	3.23	3.4	0.003	0.57	0.0	0.04	18.33	0.00	2.276	8.11	0.39	5.2	94.3	0.5	1.03	0.65	0.77	0.76	3.4	0.003	0.60	0.0	0.04	18.37	0.00	2.471	9.10	3.00	4.8	94.7	0.4	0.63	0.46	0.67	0.83	1.50	9443	1207	1	0	0	0	0	logfile
✔	8UBT	42102	2025-05-12	2023-09-24	3.1	3.42	3.13	3.5	0.002	0.71	0.0	0.04	18.97	0.00	2.114	9.21	1.94	11.7	87.9	0.5	-2.09	0.63	0.76	2.34	3.5	0.002	0.65	0.0	0.04	18.77	0.00	2.399	5.79	3.58	10.9	88.8	0.3	-1.04	0.91	0.67	0.80	2.04	8642	1082	4	0	0	0	0	logfile
✔	8WHW	37550	2025-05-24	2023-09-23	3.85	4.18	3.91	4.0	0.006	0.98	2.0	0.07	21.28	0.01	2.128	17.23	1.91	8.8	90.6	0.6	-2.00	0.82	0.80	1.24	4.0	0.003	0.75	0.0	0.05	16.39	0.00	2.433	12.52	3.46	7.0	93.0	0.0	-1.27	1.15	0.82	0.82	1.06	25807	3189	23	0	65	0	0	logfile
✔	8WHS	37546	2025-05-28	2023-09-23	3.33	3.55	3.36	3.5	0.006	0.94	0.0	0.06	20.67	0.01	2.161	12.82	1.00	7.5	92.3	0.2	-1.71	0.68	0.70	1.20	3.5	0.003	0.72	0.0	0.05	16.57	0.00	2.338	7.21	3.31	6.6	93.4	0.0	-0.90	1.41	0.72	0.80	1.64	30642	3774	25	0	71	0	0	logfile
✔	8WHZ	37553	2025-05-10	2023-09-23	3.93	4.21	3.89	4.2	0.004	0.80	0.0	0.05	14.48	0.01	1.873	15.50	0.29	4.1	95.8	0.1	-0.54	0.71	0.72	1.73	4.1	0.007	0.72	0.0	0.04	16.89	0.00	2.299	10.46	2.16	3.2	96.7	0.1	0.14	2.62	0.74	0.78	0.96	6515	791	4	0	8	0	0	logfile
✔	8WHV	37549	2025-05-24	2023-09-23	3.32	3.72	3.49	3.7	0.005	0.96	0.0	0.06	20.85	0.01	1.979	16.13	1.19	8.1	91.7	0.2	-2.10	0.75	0.81	2.53	3.7	0.003	0.73	0.0	0.05	15.88	0.00	2.457	9.23	3.57	6.5	93.5	0.1	-1.25	1.13	0.75	0.81	2.21	25818	3189	24	0	66	0	0	logfile
✔	8UBC	42082	2025-05-12	2023-09-22	3.29	3.39	3.15	3.3	0.007	1.06	0.0	0.05	25.64	0.01	2.145	37.84	25.31	10.5	84.9	4.6	-5.01	0.69	0.73	2.33	3.3	0.006	0.87	0.0	0.04	22.60	0.01	2.259	27.17	4.49	7.6	92.0	0.3	-1.51	1.37	0.74	0.75	1.70	9092	880	8	93	0	0	0	logfile
✔	8WH9	37535	2025-05-16	2023-09-22	3.31	3.58	3.36	3.4	0.009	1.19	0.0	0.07	25.84	0.01	2.216	13.31	1.08	7.4	91.7	0.9	-2.77	0.81	0.72	0.93	3.3	0.005	0.70	0.0	0.04	26.19	0.00	2.420	8.48	1.38	5.6	94.3	0.1	1.12	1.91	0.87	0.87	1.04	15328	1188	12	284	2	0	0	logfile
✔	8WGW	37517	2025-05-10	2023-09-22	2.9	3.23	3.07	3.2	0.004	0.60	0.0	0.04	19.74	0.00	2.167	9.11	0.14	4.4	95.6	0.0	-0.16	0.66	0.79	3.06	3.2	0.005	0.65	0.0	0.04	16.91	0.00	2.579	6.47	2.30	5.2	94.8	0.0	-0.05	0.99	0.63	0.78	3.07	6564	794	5	0	9	0	0	logfile
✔	8UAW	42073	2025-05-19	2023-09-22	2.97	3.33	3.12	3.3	0.003	0.51	0.0	0.04	17.19	0.00	2.238	5.77	1.67	3.7	96.3	0.0	0.04	0.73	0.83	2.42	3.3	0.004	0.52	0.0	0.04	17.54	0.00	2.614	6.05	3.01	3.7	96.3	0.0	0.61	0.32	0.74	0.85	2.36	17830	2320	10	0	0	0	0	logfile
✔	8WH6	37530	2025-05-21	2023-09-22	3.27	3.57	3.41	3.5	0.005	0.65	0.0	0.04	13.22	0.00	2.234	3.67	0.00	6.4	93.5	0.1	-0.15	0.71	0.75	2.91	3.5	0.003	0.54	0.0	0.04	14.45	0.00	2.415	3.23	1.36	4.0	95.9	0.1	0.29	0.39	0.74	0.84	2.38	22087	3153	12	3	6	0	0	logfile
✔	8WHA	37537	2025-05-19	2023-09-22	4.05	3.88	4.03	3.7	0.010	1.29	0.0	0.07	24.53	0.01	2.216	14.72	1.40	8.5	90.6	0.9	-3.09	0.83	0.78	—	3.6	0.003	0.69	0.0	0.04	23.75	0.00	2.363	9.81	0.00	5.4	94.5	0.1	0.80	1.66	0.86	0.82	—	19084	1646	14	284	4	0	0	logfile
✔	8UB9	42079	2025-05-13	2023-09-22	3.07	3.37	3.14	3.3	0.011	1.29	1.0	0.10	24.95	0.01	2.190	21.06	18.47	9.3	87.7	3.0	-3.63	0.69	0.76	2.93	3.3	0.004	0.73	0.0	0.04	22.30	0.01	2.182	14.68	2.41	5.8	93.9	0.3	0.02	0.85	0.70	0.76	1.89	10370	893	9	148	0	0	0	logfile
✔	8WGY	37522	2025-05-24	2023-09-22	2.91	3.15	3.01	3.1	0.009	0.90	1.0	0.04	16.95	0.01	1.936	8.31	1.34	5.0	94.9	0.2	-0.28	0.70	0.82	3.17	3.1	0.006	0.68	0.0	0.05	17.10	0.01	1.904	6.84	3.20	5.6	94.1	0.3	-0.59	0.30	0.71	0.88	3.11	25643	3171	13	3	11	0	0	logfile
✔	8UB8	42078	2025-05-13	2023-09-22	3.28	3.44	3.22	3.4	0.011	1.43	0.0	0.11	23.56	0.01	1.887	27.19	6.27	8.7	89.0	2.3	-4.02	0.65	0.72	3.22	3.4	0.004	0.68	0.0	0.04	22.17	0.01	2.303	13.18	3.20	5.9	93.6	0.6	0.26	0.62	0.75	0.81	3.23	10299	897	9	143	0	0	0	logfile
✔	8UBA	42080	2025-05-13	2023-09-22	3.2	3.46	3.22	3.4	0.011	1.25	0.0	0.10	23.38	0.01	2.202	28.19	7.20	8.2	89.7	2.0	-3.80	0.72	0.77	2.89	3.4	0.003	0.71	0.0	0.04	21.89	0.01	2.360	16.75	3.07	6.4	93.0	0.6	0.00	0.86	0.75	0.78	2.21	10299	897	9	143	0	0	0	logfile

• ← previous
• Page 163 of 680
• next →