Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WGR	37515	2025-05-12	2023-09-22	2.75	3.15	2.83	3.1	0.004	0.71	0.0	0.04	17.04	0.00	2.026	4.64	2.38	3.1	96.7	0.2	1.68	0.54	0.77	1.91	3.1	0.003	0.58	0.0	0.04	16.99	0.00	2.479	2.83	1.08	2.9	97.1	0.0	1.63	1.22	0.53	0.77	3.18	8830	548	2	0	4	34	4371	logfile
✔	8WH7	37532	2025-05-14	2023-09-22	2.65	2.80	2.63	2.8	0.004	0.68	0.0	0.05	19.13	0.00	2.251	2.73	0.00	3.2	96.8	0.0	-0.70	0.38	0.57	2.52	2.8	0.004	0.78	0.0	0.06	16.50	0.00	2.440	2.07	2.65	3.0	97.0	0.0	-0.79	0.94	0.71	0.85	3.14	11523	1437	12	0	36	0	0	logfile
✔	8WH6	37530	2025-05-21	2023-09-22	3.27	3.57	3.41	3.5	0.005	0.65	0.0	0.04	13.22	0.00	2.234	3.67	0.00	6.4	93.5	0.1	-0.15	0.71	0.75	2.91	3.5	0.003	0.54	0.0	0.04	14.45	0.00	2.415	3.23	1.36	4.0	95.9	0.1	0.29	0.39	0.74	0.84	2.38	22087	3153	12	3	6	0	0	logfile
✔	8UBC	42082	2025-05-12	2023-09-22	3.29	3.39	3.15	3.3	0.007	1.06	0.0	0.05	25.64	0.01	2.145	37.84	25.31	10.5	84.9	4.6	-5.01	0.69	0.73	2.33	3.3	0.006	0.87	0.0	0.04	22.60	0.01	2.259	27.17	4.49	7.6	92.0	0.3	-1.51	1.37	0.74	0.75	1.70	9092	880	8	93	0	0	0	logfile
✔	8UB9	42079	2025-05-13	2023-09-22	3.07	3.37	3.14	3.3	0.011	1.29	1.0	0.10	24.95	0.01	2.190	21.06	18.47	9.3	87.7	3.0	-3.63	0.69	0.76	2.93	3.3	0.004	0.73	0.0	0.04	22.30	0.01	2.182	14.68	2.41	5.8	93.9	0.3	0.02	0.85	0.70	0.76	1.89	10370	893	9	148	0	0	0	logfile
✔	8WGW	37517	2025-05-10	2023-09-22	2.9	3.23	3.07	3.2	0.004	0.60	0.0	0.04	19.74	0.00	2.167	9.11	0.14	4.4	95.6	0.0	-0.16	0.66	0.79	3.06	3.2	0.005	0.65	0.0	0.04	16.91	0.00	2.579	6.47	2.30	5.2	94.8	0.0	-0.05	0.99	0.63	0.78	3.07	6564	794	5	0	9	0	0	logfile
✔	8UB8	42078	2025-05-13	2023-09-22	3.28	3.44	3.22	3.4	0.011	1.43	0.0	0.11	23.56	0.01	1.887	27.19	6.27	8.7	89.0	2.3	-4.02	0.65	0.72	3.22	3.4	0.004	0.68	0.0	0.04	22.17	0.01	2.303	13.18	3.20	5.9	93.6	0.6	0.26	0.62	0.75	0.81	3.23	10299	897	9	143	0	0	0	logfile
✔	8WH3	37527	2025-05-21	2023-09-22	2.87	3.11	2.99	3.2	0.003	0.57	0.0	0.04	17.91	0.00	2.188	8.38	1.97	4.0	96.0	0.0	0.12	0.62	0.74	2.38	3.1	0.006	0.66	0.0	0.05	18.06	0.00	2.468	7.14	2.54	4.7	95.3	0.0	-0.17	0.94	0.65	0.83	2.38	22278	2778	6	0	0	0	0	logfile
✔	8UBB	42081	2025-05-13	2023-09-22	3.23	3.27	3.07	3.2	0.010	1.21	1.0	0.06	25.82	0.01	2.199	41.97	20.00	10.7	85.7	3.6	-4.10	0.70	0.74	3.02	3.2	0.005	0.81	0.0	0.04	23.10	0.01	2.280	25.23	2.95	7.3	91.9	0.8	-0.96	0.95	0.74	0.76	2.08	10349	891	9	148	0	0	0	logfile
✔	8WH4	37528	2025-05-22	2023-09-22	3.03	3.31	3.19	3.3	0.008	0.83	1.0	0.04	18.55	0.01	2.077	9.99	3.10	4.3	95.7	0.0	-0.61	0.62	0.76	2.20	3.3	0.003	0.57	0.0	0.04	18.54	0.00	2.482	6.70	3.95	4.5	95.5	0.0	-0.36	0.93	0.68	0.72	2.13	22354	2778	7	4	0	0	0	logfile
✔	8WH8	37533	2025-05-16	2023-09-22	3.6	3.66	3.57	3.5	0.013	1.40	1.0	0.07	25.12	0.01	2.300	14.01	0.72	7.4	91.7	0.9	-3.35	0.82	0.81	1.31	3.5	0.005	0.68	0.0	0.04	25.73	0.00	2.387	9.29	2.76	4.4	95.5	0.1	1.12	0.96	0.84	0.84	1.16	14304	1149	12	250	1	0	0	logfile
✔	8WH5	37529	2025-05-16	2023-09-22	3.58	3.82	3.52	3.5	0.012	1.35	0.0	0.07	25.45	0.01	2.219	14.70	0.91	7.4	91.8	0.8	-3.46	0.85	0.80	1.13	3.5	0.004	0.64	0.0	0.03	25.86	0.00	2.492	8.76	1.52	4.2	95.5	0.3	1.41	1.00	0.87	0.85	0.95	14663	1156	11	266	0	0	0	logfile
✔	8WHA	37537	2025-05-19	2023-09-22	4.05	3.88	4.03	3.7	0.010	1.29	0.0	0.07	24.53	0.01	2.216	14.72	1.40	8.5	90.6	0.9	-3.09	0.83	0.78	—	3.6	0.003	0.69	0.0	0.04	23.75	0.00	2.363	9.81	0.00	5.4	94.5	0.1	0.80	1.66	0.86	0.82	—	19084	1646	14	284	4	0	0	logfile
✔	8WGY	37522	2025-05-24	2023-09-22	2.91	3.15	3.01	3.1	0.009	0.90	1.0	0.04	16.95	0.01	1.936	8.31	1.34	5.0	94.9	0.2	-0.28	0.70	0.82	3.17	3.1	0.006	0.68	0.0	0.05	17.10	0.01	1.904	6.84	3.20	5.6	94.1	0.3	-0.59	0.30	0.71	0.88	3.11	25643	3171	13	3	11	0	0	logfile
✔	8WGE	37511	2025-05-15	2023-09-21	3.4	3.15	3.27	3.2	0.002	0.44	0.0	0.04	15.64	0.00	2.292	6.70	0.34	1.8	98.2	0.0	0.72	0.68	0.86	2.82	3.2	0.002	0.53	0.0	0.04	16.17	0.00	2.619	6.55	2.09	2.4	97.6	0.0	1.28	0.29	0.67	0.86	2.55	13515	1740	10	0	5	0	0	logfile
✔	8UAH	42064	2025-05-09	2023-09-21	3.3	3.50	3.24	3.5	0.005	1.03	0.0	0.05	20.84	0.01	2.182	11.87	3.90	13.0	86.4	0.7	-4.43	0.72	0.83	1.72	3.5	0.003	0.72	0.0	0.04	20.07	0.00	2.513	6.22	3.90	12.8	87.0	0.2	-3.43	0.88	0.71	0.84	2.16	3534	451	2	0	0	0	0	logfile
✔	8QLo	18486	2025-05-11	2023-09-20	2.57	3.41	2.61	3.2	0.009	1.18	1.0	0.08	15.29	0.01	2.209	14.78	2.16	4.5	95.4	0.1	-1.41	0.76	0.78	2.76	3.2	0.003	0.67	0.0	0.04	16.53	0.00	2.489	7.83	2.67	2.3	97.7	0.0	0.62	0.87	0.77	0.80	2.68	7282	892	2	0	0	0	0	logfile
✔	8UA7	42053	2025-05-13	2023-09-20	3.3	3.66	3.33	3.4	0.004	0.67	0.0	0.04	28.72	0.01	2.099	12.79	5.54	10.6	89.0	0.4	-1.00	0.78	0.77	0.81	3.4	0.004	0.66	0.0	0.03	28.66	0.00	2.078	9.67	7.12	10.1	89.4	0.5	-0.28	1.04	0.78	0.78	0.86	11263	778	10	260	0	0	0	logfile
✔	8UA4	42050	2025-05-30	2023-09-20	3.58	4.89	3.35	3.8	0.013	1.30	3.0	0.07	17.67	0.01	1.984	7.43	1.31	0.6	99.4	0.0	-2.26	0.60	0.67	1.52	3.8	0.004	0.94	0.0	0.05	16.65	0.01	2.218	17.15	3.79	7.2	92.8	0.0	-1.52	2.77	0.63	0.81	1.34	33292	4275	30	0	13	0	0	logfile
✘	8WFX	37499	2025-05-25	2023-09-20	3.73	3.90	3.64	3.7	0.007	1.08	0.0	0.06	17.48	0.01	2.221	11.70	0.79	10.3	89.6	0.1	-5.44	0.78	0.71	1.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27176	3319	15	50	0	0	0	logfile

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