Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9K0X	61958	2025-07-25	2024-10-16	2.83	3.04	2.83	3.1	0.004	0.82	0.0	0.05	16.09	0.01	2.228	6.83	0.00	2.8	97.2	0.0	-0.45	0.65	0.78	2.31	3.1	0.003	0.56	0.0	0.04	16.71	0.00	2.469	7.11	3.92	2.7	97.3	0.0	0.47	1.14	0.65	0.78	2.37	7300	979	6	0	1	0	0	logfile
✔	9K20	61986	2025-07-26	2024-10-16	2.65	2.93	2.73	2.9	0.004	0.78	0.0	0.04	16.09	0.01	2.225	6.92	0.00	2.6	97.4	0.0	0.07	0.66	0.78	3.18	2.9	0.003	0.58	0.0	0.04	16.38	0.00	2.420	6.12	2.90	2.6	97.4	0.0	0.59	0.26	0.66	0.79	3.23	8292	1111	6	0	1	0	0	logfile
✔	9DZ2	47323	2025-07-27	2024-10-15	3.31	3.93	3.33	3.7	0.004	0.74	0.0	0.05	14.55	0.01	2.174	10.10	0.49	6.3	93.2	0.6	-2.10	0.78	0.73	3.18	3.8	0.003	0.69	0.0	0.04	15.43	0.00	2.346	6.15	2.14	6.7	92.7	0.6	-1.60	0.74	0.76	0.79	2.97	9523	1207	8	0	0	0	0	logfile
✔	9H1Z	51786	2025-07-29	2024-10-10	3.3	3.72	3.44	3.7	0.015	0.99	2.0	0.05	13.83	0.01	1.599	4.31	0.91	3.1	96.9	0.0	-1.10	0.54	0.66	3.18	3.6	0.011	0.68	0.0	0.04	15.24	0.00	2.447	3.39	1.24	3.5	96.5	0.0	0.97	2.18	0.67	0.80	2.49	10892	1340	3	0	1	0	0	logfile
✔	9JWG	61852	2025-07-30	2024-10-10	3.47	3.90	3.74	3.8	0.007	0.99	8.0	0.06	16.67	0.01	2.010	14.53	1.68	9.0	90.6	0.4	-1.58	0.70	0.77	1.54	3.8	0.003	0.73	0.0	0.04	17.43	0.01	2.509	10.21	2.75	7.3	92.6	0.1	-0.45	0.49	0.69	0.79	1.40	11647	1456	2	0	0	0	0	logfile
✔	9H1S	51771	2025-07-24	2024-10-10	3.0	3.84	2.13	3.4	0.023	1.64	0.0	0.07	9.90	0.01	2.272	5.47	0.00	3.8	96.2	0.0	-1.11	0.49	0.82	2.90	3.4	0.004	0.80	0.0	0.05	14.41	0.01	2.418	11.66	1.43	4.4	95.6	0.0	-0.22	1.72	0.50	0.83	1.91	4994	616	4	0	2	0	0	logfile
✔	9JVG	61838	2025-07-26	2024-10-09	2.76	3.38	2.79	3.2	0.008	0.79	2.0	0.05	12.56	0.00	1.644	10.65	0.38	5.6	94.4	0.0	-0.72	0.69	0.75	2.63	3.2	0.003	0.67	0.0	0.04	15.99	0.00	2.444	8.35	2.64	2.8	97.2	0.0	0.27	0.61	0.67	0.76	2.50	8396	1151	5	0	0	0	0	logfile
✔	9JVM	61840	2025-07-23	2024-10-09	2.36	2.47	2.27	3.0	0.009	1.11	0.0	0.05	12.65	0.01	2.211	12.67	0.00	11.2	88.4	0.4	-1.75	0.65	0.61	4.04	3.1	0.004	0.85	0.0	0.04	14.34	0.01	2.647	5.76	0.00	5.0	95.0	0.0	1.44	0.90	0.65	0.62	2.37	1800	267	1	0	0	0	0	logfile
✔	9JVW	61845	2025-07-27	2024-10-09	3.41	3.87	3.45	3.8	0.008	1.12	0.0	0.08	14.78	0.01	2.210	7.00	0.29	5.2	94.8	0.0	-3.94	0.47	0.64	1.70	3.8	0.003	0.68	0.0	0.04	16.06	0.00	2.500	7.67	2.36	3.4	96.6	0.0	1.42	1.29	0.54	0.72	1.61	9480	1245	6	0	6	0	0	logfile
✔	9DWM	47255	2025-07-31	2024-10-09	4.2	5.01	—	4.2	0.005	0.61	0.0	0.04	30.43	0.00	2.339	6.64	0.00	3.0	97.0	0.0	2.59	0.90	0.88	—	4.2	0.007	0.67	0.0	0.04	30.61	0.00	2.493	13.94	0.00	6.8	93.2	0.0	1.48	1.45	0.90	0.89	—	11175	1065	12	289	0	0	0	logfile
✔	9JVH	61839	2025-07-23	2024-10-09	2.76	2.39	2.77	2.8	0.005	0.81	1.0	0.05	12.93	0.00	2.375	8.50	0.00	8.9	91.1	0.0	-1.37	0.71	0.73	4.42	2.9	0.003	0.62	0.0	0.04	15.28	0.00	2.620	5.43	1.94	4.5	95.5	0.0	0.50	0.50	0.73	0.75	2.28	2180	294	1	0	0	0	0	logfile
✔	9JVV	61844	2025-07-27	2024-10-09	2.82	3.24	2.83	3.2	0.003	0.67	0.0	0.04	12.39	0.00	2.265	8.46	0.10	3.4	96.6	0.0	-0.66	0.60	0.80	2.20	3.2	0.003	0.57	0.0	0.04	14.69	0.00	2.566	5.75	2.16	3.7	96.3	0.0	1.64	0.43	0.58	0.81	1.29	9405	1245	6	0	3	0	0	logfile
✔	9DWN	47258	2025-07-23	2024-10-09	3.2	2.91	3.15	3.3	0.004	0.63	0.0	0.04	14.43	0.00	2.165	6.64	0.45	2.6	97.4	0.0	2.60	0.56	0.80	3.93	3.3	0.003	0.50	0.0	0.04	14.66	0.00	2.522	6.52	1.57	2.4	97.6	0.0	4.12	0.26	0.54	0.82	3.73	4325	540	6	0	9	2	0	logfile
✔	9DWK	47253	2025-07-31	2024-10-09	4.3	6.45	4.39	4.3	0.005	0.66	0.0	0.06	30.86	0.00	2.231	7.56	0.00	1.0	99.0	0.0	2.01	0.93	0.90	—	4.3	0.005	0.58	0.0	0.04	31.05	0.00	1.959	12.88	0.00	3.5	96.5	0.0	3.89	1.28	0.93	0.91	—	10375	1068	12	249	0	0	0	logfile
✔	9DVQ	47215	2025-07-31	2024-10-08	2.7	2.09	2.68	1.8	0.005	0.66	0.0	0.05	16.04	0.01	2.109	3.63	0.81	3.5	96.5	0.0	-0.57	0.70	0.77	4.23	1.8	0.003	0.58	0.0	0.05	16.80	0.00	2.487	1.83	2.49	3.8	96.2	0.0	-0.59	1.95	0.85	0.86	4.39	12791	1560	5	0	8	0	0	logfile
✔	9JUN	61831	2025-07-27	2024-10-08	3.4	3.25	3.71	3.4	0.003	0.57	0.0	0.04	14.49	0.00	2.212	11.17	0.00	5.8	94.2	0.0	1.31	0.56	0.74	1.09	3.3	0.003	0.63	0.0	0.04	16.63	0.00	2.516	10.23	1.69	5.4	94.6	0.0	1.18	0.77	0.62	0.81	1.74	8971	1165	1	0	0	0	0	logfile
✔	9JUK	61828	2025-07-27	2024-10-08	3.3	2.84	3.64	3.3	0.004	0.64	0.0	0.04	16.73	0.01	2.036	14.03	0.11	4.9	95.1	0.0	0.83	0.54	0.70	1.78	3.3	0.003	0.59	0.0	0.04	16.99	0.00	2.004	11.61	2.32	5.4	94.6	0.0	1.09	0.41	0.54	0.72	1.72	9035	1165	2	0	4	0	0	logfile
✔	9JUJ	61827	2025-07-27	2024-10-08	3.4	3.22	3.39	3.5	0.005	0.76	0.0	0.05	14.45	0.00	2.215	14.60	0.21	4.7	95.3	0.0	0.13	0.52	0.66	0.35	3.4	0.004	0.68	0.0	0.04	17.15	0.00	2.497	12.83	2.21	5.1	94.9	0.0	0.54	1.29	0.57	0.75	1.20	8971	1165	1	0	0	0	0	logfile
✔	9JUM	61830	2025-07-27	2024-10-08	3.1	3.55	3.61	3.4	0.005	0.76	0.0	0.05	15.66	0.01	1.922	15.77	0.00	4.1	95.9	0.0	0.83	0.70	0.83	1.75	3.4	0.003	0.69	0.0	0.04	16.09	0.00	2.010	13.04	1.69	4.7	95.3	0.0	1.70	0.48	0.71	0.85	1.60	9069	1165	2	0	5	0	0	logfile
✔	9DVJ	47208	2025-07-31	2024-10-08	2.52	2.45	2.32	3.3	0.004	0.65	0.0	0.05	17.14	0.00	2.229	3.63	0.75	1.1	98.9	0.0	3.78	0.50	0.80	2.42	3.2	0.003	0.50	0.0	0.04	16.68	0.00	2.408	4.17	1.05	2.3	97.7	0.0	2.93	1.32	0.50	0.83	2.48	12710	754	4	0	6	0	6258	logfile

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