Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JUM	61830	2025-07-27	2024-10-08	3.1	3.55	3.61	3.4	0.005	0.76	0.0	0.05	15.66	0.01	1.922	15.77	0.00	4.1	95.9	0.0	0.83	0.70	0.83	1.75	3.4	0.003	0.69	0.0	0.04	16.09	0.00	2.010	13.04	1.69	4.7	95.3	0.0	1.70	0.48	0.71	0.85	1.60	9069	1165	2	0	5	0	0	logfile
✔	9JUP	61833	2025-07-26	2024-10-08	3.1	2.60	3.37	3.0	0.004	0.57	0.0	0.04	16.34	0.00	1.964	8.84	0.00	4.0	96.0	0.0	1.64	0.56	0.76	2.56	3.0	0.004	0.61	0.0	0.04	16.97	0.00	1.913	9.70	3.41	4.6	95.3	0.1	1.27	0.37	0.59	0.80	2.51	8656	1118	2	0	4	0	0	logfile
✔	9JUJ	61827	2025-07-27	2024-10-08	3.4	3.22	3.39	3.5	0.005	0.76	0.0	0.05	14.45	0.00	2.215	14.60	0.21	4.7	95.3	0.0	0.13	0.52	0.66	0.35	3.4	0.004	0.68	0.0	0.04	17.15	0.00	2.497	12.83	2.21	5.1	94.9	0.0	0.54	1.29	0.57	0.75	1.20	8971	1165	1	0	0	0	0	logfile
✔	9DW5	47236	2025-07-28	2024-10-08	3.8	4.25	3.96	4.1	0.005	0.76	0.0	0.04	14.41	0.00	2.012	6.90	2.49	2.8	97.2	0.1	0.83	0.63	0.78	1.61	4.1	0.003	0.67	0.0	0.04	14.81	0.00	1.963	7.74	4.53	3.7	96.3	0.0	0.92	0.74	0.62	0.78	1.27	9748	1464	3	0	3	0	0	logfile
✔	9DVR	47216	2025-07-31	2024-10-08	2.7	2.19	2.70	2.0	0.004	0.60	0.0	0.05	10.96	0.00	2.024	4.58	0.89	4.7	95.3	0.0	-0.53	0.80	0.79	4.34	1.9	0.003	0.60	0.0	0.05	15.02	0.00	2.551	5.32	2.54	4.8	95.2	0.0	-0.75	0.35	0.80	0.79	3.78	13692	1682	6	0	8	0	0	logfile
✔	9DVK	47209	2025-07-31	2024-10-08	3.06	3.17	2.87	3.4	0.004	0.68	0.0	0.04	17.97	0.00	2.258	5.42	0.74	1.1	98.9	0.0	3.52	0.52	0.76	2.02	3.4	0.003	0.50	0.0	0.03	16.63	0.00	2.401	5.80	1.93	2.0	98.0	0.0	2.83	1.05	0.48	0.79	1.64	12839	760	4	0	6	0	6319	logfile
✔	9JUN	61831	2025-07-27	2024-10-08	3.4	3.25	3.71	3.4	0.003	0.57	0.0	0.04	14.49	0.00	2.212	11.17	0.00	5.8	94.2	0.0	1.31	0.56	0.74	1.09	3.3	0.003	0.63	0.0	0.04	16.63	0.00	2.516	10.23	1.69	5.4	94.6	0.0	1.18	0.77	0.62	0.81	1.74	8971	1165	1	0	0	0	0	logfile
✔	9DVJ	47208	2025-07-31	2024-10-08	2.52	2.45	2.32	3.3	0.004	0.65	0.0	0.05	17.14	0.00	2.229	3.63	0.75	1.1	98.9	0.0	3.78	0.50	0.80	2.42	3.2	0.003	0.50	0.0	0.04	16.68	0.00	2.408	4.17	1.05	2.3	97.7	0.0	2.93	1.32	0.50	0.83	2.48	12710	754	4	0	6	0	6258	logfile
✔	9JUB	61826	2025-07-24	2024-10-07	3.1	3.29	3.10	3.3	0.022	1.26	1.0	0.06	11.95	0.01	1.934	17.05	0.56	7.6	92.3	0.1	-1.75	0.55	0.67	3.19	3.3	0.004	0.72	0.0	0.05	13.92	0.00	2.506	6.86	1.81	5.6	94.4	0.0	-1.14	0.58	0.62	0.75	2.89	6479	829	5	0	5	0	0	logfile
✔	9GZY	51737	2025-07-23	2024-10-04	3.0	3.12	2.93	3.1	0.008	0.80	0.0	0.05	11.92	0.00	2.446	7.26	0.00	0.0	100.0	0.0	-2.35	0.51	0.81	6.20	3.1	0.061	0.69	0.0	0.05	13.61	0.00	2.430	1.89	0.26	0.3	99.7	0.0	-3.64	0.62	0.45	0.85	6.12	3276	444	36	0	12	0	0	logfile
✔	9GZP	51730	2025-07-23	2024-10-04	2.9	2.58	2.84	3.1	0.011	0.93	0.0	0.08	8.57	0.00	2.451	8.84	0.00	0.0	100.0	0.0	-4.08	0.41	0.81	6.41	3.1	0.051	0.55	0.0	0.04	9.93	0.00	2.490	0.76	3.33	0.0	100.0	0.0	-4.99	1.17	0.43	0.84	6.86	2064	276	24	0	12	0	0	logfile
✔	9DUS	47176	2025-07-30	2024-10-04	3.12	2.16	3.15	2.0	0.004	0.73	0.0	0.05	11.12	0.01	2.307	2.81	0.00	3.0	97.0	0.0	-1.34	0.76	0.77	3.08	2.0	0.004	0.58	0.0	0.04	14.63	0.00	2.479	6.17	1.34	3.6	96.4	0.0	1.58	1.33	0.77	0.79	2.74	12702	1590	5	0	0	0	0	logfile
✔	9GZX	51736	2025-07-23	2024-10-04	3.1	3.13	3.01	3.1	0.010	1.04	0.0	0.10	11.52	0.00	2.508	10.48	3.45	0.0	100.0	0.0	-2.02	0.45	0.86	5.99	3.1	0.054	0.64	0.0	0.04	13.50	0.00	2.180	0.17	4.89	3.3	96.7	0.0	-2.88	0.60	0.47	0.88	6.33	3006	402	30	0	12	0	0	logfile
✔	9GZT	51734	2025-07-23	2024-10-04	2.9	3.05	2.86	3.1	0.007	0.84	0.0	0.05	10.90	0.00	2.597	6.61	0.00	0.0	100.0	0.0	-3.15	0.54	0.86	6.19	3.1	0.049	0.54	0.0	0.04	12.75	0.00	2.322	0.93	5.26	0.0	100.0	0.0	-3.71	1.19	0.48	0.90	6.01	3924	528	36	0	12	0	0	logfile
✔	9GZS	51733	2025-07-23	2024-10-04	3.1	3.24	3.07	3.3	0.009	0.83	0.0	0.07	11.05	0.00	2.658	8.18	3.45	0.0	100.0	0.0	-2.04	0.41	0.84	5.31	3.3	0.043	0.66	0.0	0.05	11.52	0.00	1.863	1.74	2.30	2.2	97.8	0.0	-3.94	1.17	0.44	0.86	6.67	3000	402	30	0	12	0	0	logfile
✔	9GZW	51735	2025-07-23	2024-10-04	2.9	2.96	2.83	3.1	0.008	0.85	0.0	0.06	11.34	0.00	2.673	1.70	4.76	0.0	100.0	0.0	-2.72	0.48	0.86	7.38	3.0	0.068	0.69	0.0	0.05	11.75	0.00	2.181	0.00	1.19	3.8	96.2	0.0	-4.25	0.92	0.48	0.88	7.84	2160	288	24	0	12	0	0	logfile
✔	9GZ2	51720	2025-07-24	2024-10-03	2.9	3.11	2.89	3.1	0.007	1.13	0.0	0.07	14.04	0.01	2.068	1.62	0.15	4.0	96.0	0.0	-1.75	0.65	0.82	4.55	3.1	0.003	0.64	0.0	0.04	16.89	0.00	2.121	6.24	2.41	2.2	97.8	0.0	0.33	1.00	0.68	0.85	3.51	6200	764	2	0	4	0	0	logfile
✔	9DUo	47172	2025-07-31	2024-10-03	2.66	2.89	2.66	2.9	0.002	0.48	0.0	0.04	17.78	0.00	2.186	5.97	3.20	1.2	98.8	0.0	1.68	0.69	0.87	3.49	2.9	0.002	0.52	0.0	0.04	17.82	0.00	2.403	5.30	3.27	0.8	99.2	0.0	2.26	0.17	0.67	0.86	3.26	13187	1736	4	0	0	0	0	logfile
✔	9DUN	47171	2025-07-24	2024-10-03	3.32	3.63	3.23	3.7	0.003	0.59	0.0	0.04	18.87	0.01	2.246	11.28	4.63	11.5	88.5	0.0	-2.65	0.56	0.70	1.38	3.7	0.003	0.60	0.0	0.04	19.03	0.01	2.465	8.37	5.82	9.9	89.9	0.1	-2.00	0.27	0.53	0.68	0.96	6672	834	6	0	0	0	0	logfile
✔	9GZ3	51721	2025-07-24	2024-10-03	3.4	3.74	3.44	3.7	0.007	1.07	0.0	0.06	14.74	0.01	2.088	1.54	0.15	3.6	96.2	0.3	-1.99	0.72	0.78	3.42	3.7	0.003	0.65	0.0	0.04	16.47	0.00	2.067	6.09	1.66	2.6	97.4	0.0	0.45	1.29	0.68	0.79	2.18	6180	764	2	0	3	0	0	logfile

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