Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UBT	42102	2025-06-07	2023-09-24	3.1	3.42	3.13	3.5	0.002	0.71	0.0	0.04	18.97	0.00	2.114	9.21	1.94	11.7	87.9	0.5	-2.09	0.63	0.76	2.34	3.5	0.002	0.64	0.0	0.04	18.72	0.00	2.403	6.37	3.48	11.2	88.5	0.3	-0.94	0.90	0.67	0.78	1.95	8642	1082	4	0	0	0	0	logfile
✔	8UBR	42101	2025-06-08	2023-09-24	2.7	2.07	2.73	2.6	0.006	0.83	0.0	0.06	17.61	0.00	1.887	3.81	0.10	1.8	98.2	0.0	0.76	0.61	0.83	2.22	2.6	0.003	0.52	0.0	0.04	17.95	0.00	1.998	3.44	2.47	1.4	98.6	0.0	2.39	0.80	0.61	0.84	2.62	9440	1156	2	0	9	4	0	logfile
✔	8WHW	37550	2025-06-22	2023-09-23	3.85	4.18	3.91	4.0	0.006	0.98	2.0	0.07	21.28	0.01	2.128	17.23	1.91	8.8	90.6	0.6	-2.00	0.82	0.80	1.24	4.0	0.003	0.75	0.0	0.05	16.48	0.00	2.416	12.81	3.39	7.1	92.9	0.0	-1.32	1.15	0.82	0.82	1.08	25807	3189	23	0	65	0	0	logfile
✔	8WHZ	37553	2025-06-05	2023-09-23	3.93	4.21	3.89	4.2	0.004	0.80	0.0	0.05	14.48	0.01	1.873	15.50	0.29	4.1	95.8	0.1	-0.54	0.71	0.72	1.73	4.1	0.006	1.13	1.0	0.05	16.83	0.00	2.299	14.24	2.30	3.7	96.2	0.1	0.31	2.61	0.74	0.77	0.82	6515	791	4	0	8	0	0	logfile
✔	8WHS	37546	2025-06-26	2023-09-23	3.33	3.55	3.36	3.5	0.006	0.94	0.0	0.06	20.67	0.01	2.161	12.82	1.00	7.5	92.3	0.2	-1.71	0.68	0.70	1.20	3.5	0.007	0.87	0.0	0.05	16.63	0.01	2.352	8.92	3.61	8.0	92.0	0.0	-1.30	1.79	0.72	0.80	1.76	30642	3774	25	0	71	0	0	logfile
✔	8WHV	37549	2025-06-22	2023-09-23	3.32	3.72	3.49	3.7	0.005	0.96	0.0	0.06	20.85	0.01	1.979	16.13	1.19	8.1	91.7	0.2	-2.10	0.75	0.81	2.53	3.7	0.004	0.77	0.0	0.05	15.93	0.00	2.457	9.57	3.53	6.6	93.3	0.1	-1.52	0.52	0.76	0.82	2.28	25818	3189	24	0	66	0	0	logfile
✔	8WH6	37530	2025-06-19	2023-09-22	3.27	3.57	3.41	3.5	0.005	0.65	0.0	0.04	13.22	0.00	2.234	3.67	0.00	6.4	93.5	0.1	-0.15	0.71	0.75	2.91	3.5	0.003	0.55	0.0	0.04	14.45	0.00	2.399	3.23	1.68	5.2	94.7	0.1	0.18	0.38	0.74	0.84	2.43	22087	3153	12	3	6	0	0	logfile
✔	8WH3	37527	2025-06-19	2023-09-22	2.87	3.11	2.99	3.2	0.003	0.57	0.0	0.04	17.91	0.00	2.188	8.38	1.97	4.0	96.0	0.0	0.12	0.62	0.74	2.38	3.1	0.005	0.76	2.0	0.05	18.05	0.01	1.892	7.68	2.42	4.0	96.0	0.0	0.03	0.93	0.65	0.83	2.31	22278	2778	6	0	0	0	0	logfile
✔	8WH7	37532	2025-06-10	2023-09-22	2.65	2.80	2.63	2.8	0.004	0.68	0.0	0.05	19.13	0.00	2.251	2.73	0.00	3.2	96.8	0.0	-0.70	0.38	0.57	2.52	2.8	0.003	0.72	0.0	0.05	16.25	0.00	2.456	2.16	2.23	2.7	97.3	0.0	-0.74	0.39	0.71	0.85	3.03	11523	1437	12	0	36	0	0	logfile
✔	8WH4	37528	2025-06-19	2023-09-22	3.03	3.31	3.19	3.3	0.008	0.83	1.0	0.04	18.55	0.01	2.077	9.99	3.10	4.3	95.7	0.0	-0.61	0.62	0.76	2.20	3.3	0.004	0.60	0.0	0.04	18.57	0.00	2.445	6.95	3.82	4.8	95.2	0.0	-0.47	0.93	0.69	0.76	2.18	22354	2778	7	4	0	0	0	logfile
✔	8WGX	37520	2025-06-07	2023-09-22	3.47	3.84	3.51	3.8	0.003	0.54	0.0	0.04	16.22	0.00	2.283	4.10	0.22	3.3	96.7	0.0	1.83	0.56	0.74	1.75	3.8	0.003	0.50	0.0	0.04	16.34	0.00	2.409	4.56	1.74	3.1	96.9	0.0	1.82	0.46	0.55	0.76	2.03	8760	547	2	0	2	0	4363	logfile
✔	8WGY	37522	2025-06-22	2023-09-22	2.91	3.15	3.01	3.1	0.009	0.90	1.0	0.04	16.95	0.01	1.936	8.31	1.34	5.0	94.9	0.2	-0.28	0.70	0.82	3.17	3.1	0.005	0.62	0.0	0.05	17.02	0.00	1.924	6.54	3.45	5.2	94.6	0.3	-0.39	0.29	0.71	0.88	3.03	25643	3171	13	3	11	0	0	logfile
✔	8UBC	42082	2025-06-07	2023-09-22	3.29	3.39	3.15	3.3	0.007	1.06	0.0	0.05	25.64	0.01	2.145	37.84	25.31	10.5	84.9	4.6	-5.01	0.69	0.73	2.33	3.3	0.005	1.08	1.0	0.05	22.46	0.01	2.212	28.33	4.90	7.0	92.6	0.3	-1.31	1.37	0.74	0.75	1.50	9092	880	8	93	0	0	0	logfile
✔	8UB9	42079	2025-06-09	2023-09-22	3.07	3.37	3.14	3.3	0.011	1.29	1.0	0.10	24.95	0.01	2.190	21.06	18.47	9.3	87.7	3.0	-3.63	0.69	0.76	2.93	3.3	0.004	0.73	0.0	0.04	22.30	0.01	2.182	14.68	2.41	5.8	93.9	0.3	0.02	0.85	0.70	0.76	1.89	10370	893	9	148	0	0	0	logfile
✔	8WH5	37529	2025-06-12	2023-09-22	3.58	3.82	3.52	3.5	0.012	1.35	0.0	0.07	25.45	0.01	2.219	14.70	0.91	7.4	91.8	0.8	-3.46	0.85	0.80	1.13	3.5	0.004	0.63	0.0	0.03	25.84	0.00	2.285	8.39	2.24	4.8	95.1	0.2	1.48	1.00	0.87	0.85	1.13	14663	1156	11	266	0	0	0	logfile
✔	8UB8	42078	2025-06-09	2023-09-22	3.28	3.44	3.22	3.4	0.011	1.43	0.0	0.11	23.56	0.01	1.887	27.19	6.27	8.7	89.0	2.3	-4.02	0.65	0.72	3.22	3.4	0.004	0.68	0.0	0.04	22.17	0.01	2.303	13.18	3.20	5.9	93.6	0.6	0.26	0.62	0.75	0.81	3.23	10299	897	9	143	0	0	0	logfile
✔	8UAW	42073	2025-06-15	2023-09-22	2.97	3.33	3.12	3.3	0.003	0.51	0.0	0.04	17.19	0.00	2.238	5.77	1.67	3.7	96.3	0.0	0.04	0.73	0.83	2.42	3.2	0.004	0.52	0.0	0.05	17.51	0.00	2.620	6.11	3.17	3.3	96.7	0.0	0.45	0.32	0.77	0.86	2.38	17830	2320	10	0	0	0	0	logfile
✔	8WH8	37533	2025-06-12	2023-09-22	3.6	3.66	3.57	3.5	0.013	1.40	1.0	0.07	25.12	0.01	2.300	14.01	0.72	7.4	91.7	0.9	-3.35	0.82	0.81	1.31	3.5	0.006	0.72	0.0	0.04	25.82	0.00	2.396	9.25	1.84	4.7	95.2	0.1	1.14	0.96	0.84	0.84	1.32	14304	1149	12	250	1	0	0	logfile
✔	8WHA	37537	2025-06-16	2023-09-22	4.05	3.88	4.03	3.7	0.010	1.29	0.0	0.07	24.53	0.01	2.216	14.72	1.40	8.5	90.6	0.9	-3.09	0.83	0.78	—	3.6	0.003	0.69	0.0	0.04	23.78	0.00	2.311	9.83	0.00	5.4	94.6	0.1	0.59	1.43	0.86	0.82	—	19084	1646	14	284	4	0	0	logfile
✔	8UBF	42085	2025-06-08	2023-09-22	3.61	3.77	3.56	3.6	0.007	0.98	0.0	0.05	24.77	0.01	2.306	14.72	22.69	9.2	87.6	3.2	-3.90	0.73	0.73	2.15	3.6	0.003	0.77	0.0	0.04	21.11	0.01	2.329	13.80	2.45	6.9	92.9	0.2	0.09	1.44	0.76	0.75	1.50	9291	882	8	102	0	0	0	logfile

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