Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WH3	37527	2025-06-19	2023-09-22	2.87	3.11	2.99	3.2	0.003	0.57	0.0	0.04	17.91	0.00	2.188	8.38	1.97	4.0	96.0	0.0	0.12	0.62	0.74	2.38	3.1	0.005	0.76	2.0	0.05	18.05	0.01	1.892	7.68	2.42	4.0	96.0	0.0	0.03	0.93	0.65	0.83	2.31	22278	2778	6	0	0	0	0	logfile
✔	8WGY	37522	2025-06-22	2023-09-22	2.91	3.15	3.01	3.1	0.009	0.90	1.0	0.04	16.95	0.01	1.936	8.31	1.34	5.0	94.9	0.2	-0.28	0.70	0.82	3.17	3.1	0.005	0.62	0.0	0.05	17.02	0.00	1.924	6.54	3.45	5.2	94.6	0.3	-0.39	0.29	0.71	0.88	3.03	25643	3171	13	3	11	0	0	logfile
✔	8UBD	42083	2025-06-09	2023-09-22	3.05	3.26	3.05	3.2	0.012	1.62	2.0	0.12	25.59	0.01	2.132	43.56	20.43	10.2	86.1	3.8	-3.87	0.58	0.63	2.55	3.2	0.005	0.76	0.0	0.04	22.80	0.00	2.143	20.92	3.90	7.1	92.6	0.3	-0.46	1.68	0.70	0.74	2.32	10368	890	9	149	0	0	0	logfile
✔	8UAW	42073	2025-06-15	2023-09-22	2.97	3.33	3.12	3.3	0.003	0.51	0.0	0.04	17.19	0.00	2.238	5.77	1.67	3.7	96.3	0.0	0.04	0.73	0.83	2.42	3.2	0.004	0.52	0.0	0.05	17.51	0.00	2.620	6.11	3.17	3.3	96.7	0.0	0.45	0.32	0.77	0.86	2.38	17830	2320	10	0	0	0	0	logfile
✔	8UBA	42080	2025-06-09	2023-09-22	3.2	3.46	3.22	3.4	0.011	1.25	0.0	0.10	23.38	0.01	2.202	28.19	7.20	8.2	89.7	2.0	-3.80	0.72	0.77	2.89	3.4	0.003	0.71	0.0	0.04	21.89	0.01	2.360	16.75	3.07	6.4	93.0	0.6	0.00	0.86	0.75	0.78	2.21	10299	897	9	143	0	0	0	logfile
✔	8WH2	37526	2025-06-17	2023-09-22	2.9	3.15	2.99	3.2	0.005	0.79	0.0	0.04	16.22	0.01	1.977	4.22	1.05	3.6	96.4	0.0	0.32	0.75	0.85	3.67	3.2	0.005	0.79	0.0	0.04	16.23	0.01	1.977	5.67	1.10	3.6	96.4	0.0	0.32	0.08	0.71	0.86	3.67	20196	2778	11	5	5	0	0	logfile
✔	8WGW	37517	2025-06-05	2023-09-22	2.9	3.23	3.07	3.2	0.004	0.60	0.0	0.04	19.74	0.00	2.167	9.11	0.14	4.4	95.6	0.0	-0.16	0.66	0.79	3.06	3.2	0.003	0.60	0.0	0.04	16.76	0.00	2.573	6.93	2.58	4.6	95.4	0.0	-0.01	0.99	0.62	0.78	3.09	6564	794	5	0	9	0	0	logfile
✔	8UAV	42072	2025-06-15	2023-09-22	2.37	3.36	2.48	3.0	0.002	0.41	0.0	0.04	16.27	0.00	2.303	5.20	0.05	1.2	98.8	0.0	1.72	0.82	0.89	3.81	3.0	0.004	0.53	0.0	0.04	16.45	0.00	2.629	5.80	0.05	1.0	99.0	0.0	1.02	0.29	0.82	0.89	3.90	17740	2310	10	0	0	0	0	logfile
✔	8UBB	42081	2025-06-09	2023-09-22	3.23	3.27	3.07	3.2	0.010	1.21	1.0	0.06	25.82	0.01	2.199	41.97	20.00	10.7	85.7	3.6	-4.10	0.70	0.74	3.02	3.2	0.005	0.81	0.0	0.04	23.10	0.01	2.280	25.23	2.95	7.3	91.9	0.8	-0.96	0.95	0.74	0.76	2.08	10349	891	9	148	0	0	0	logfile
✔	8WH7	37532	2025-06-10	2023-09-22	2.65	2.80	2.63	2.8	0.004	0.68	0.0	0.05	19.13	0.00	2.251	2.73	0.00	3.2	96.8	0.0	-0.70	0.38	0.57	2.52	2.8	0.003	0.72	0.0	0.05	16.25	0.00	2.456	2.16	2.23	2.7	97.3	0.0	-0.74	0.39	0.71	0.85	3.03	11523	1437	12	0	36	0	0	logfile
✔	8UAH	42064	2025-06-04	2023-09-21	3.3	3.50	3.24	3.5	0.005	1.03	0.0	0.05	20.84	0.01	2.182	11.87	3.90	13.0	86.4	0.7	-4.43	0.72	0.83	1.72	3.5	0.004	0.74	0.0	0.04	20.07	0.00	2.468	7.35	4.15	13.4	86.4	0.2	-3.47	0.87	0.71	0.84	2.12	3534	451	2	0	0	0	0	logfile
✘	8WGE	37511	2025-06-11	2023-09-21	3.4	3.15	3.27	3.2	0.002	0.44	0.0	0.04	15.64	0.00	2.292	6.70	0.34	1.8	98.2	0.0	0.72	0.68	0.86	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13515	1740	10	0	5	0	0	logfile
✔	8WG7	37504	2025-06-06	2023-09-20	2.54	3.39	2.59	3.2	0.003	0.54	0.0	0.04	13.04	0.00	2.167	8.69	0.12	3.6	96.2	0.3	1.50	0.67	0.78	2.51	3.2	0.003	0.64	0.0	0.04	16.00	0.00	2.510	7.76	2.67	3.7	96.3	0.0	1.66	0.42	0.65	0.78	2.25	8123	1030	5	0	0	0	0	logfile
✔	8WG8	37505	2025-06-06	2023-09-20	2.71	3.54	2.73	3.3	0.005	0.68	0.0	0.05	13.93	0.00	2.170	7.15	2.13	3.8	96.2	0.0	0.12	0.64	0.79	2.81	3.3	0.006	1.00	1.0	0.04	15.74	0.00	2.283	7.65	2.83	3.8	96.2	0.0	0.75	0.51	0.63	0.79	2.36	8043	1037	6	0	0	0	0	logfile
✔	8WFX	37499	2025-06-23	2023-09-20	3.73	3.90	3.64	3.7	0.007	1.08	0.0	0.06	17.48	0.01	2.221	11.70	0.79	10.3	89.6	0.1	-5.44	0.78	0.71	1.14	3.7	0.005	0.78	0.0	0.05	18.58	0.01	2.414	16.37	4.03	10.7	89.2	0.0	-3.51	0.54	0.79	0.72	0.89	27176	3319	15	50	0	0	0	logfile
✔	8WG3	37501	2025-06-05	2023-09-20	3.4	3.61	3.39	3.6	0.009	1.47	1.0	0.08	16.49	0.01	2.528	0.86	3.30	5.6	94.4	0.0	-2.32	0.50	0.75	2.29	3.6	0.003	0.68	0.0	0.04	16.06	0.00	2.382	7.33	2.68	3.9	96.1	0.0	1.18	2.31	0.56	0.77	1.46	4585	548	2	0	4	0	0	logfile
✔	8UA3	42049	2025-06-04	2023-09-20	3.8	4.06	3.83	4.0	0.007	0.92	0.0	0.05	18.05	0.01	2.166	12.30	0.60	7.7	91.8	0.5	-2.26	0.68	0.80	2.08	4.0	0.004	0.77	0.0	0.05	18.44	0.00	2.559	8.01	3.21	7.8	92.0	0.2	-1.57	1.10	0.71	0.82	2.28	4450	570	3	0	0	0	0	logfile
✔	8UA7	42053	2025-06-09	2023-09-20	3.3	3.66	3.33	3.4	0.004	0.67	0.0	0.04	28.72	0.01	2.099	12.79	5.54	10.6	89.0	0.4	-1.00	0.78	0.77	0.81	3.4	0.004	0.87	1.0	0.04	28.64	0.00	2.078	10.30	5.54	10.5	89.0	0.5	-0.14	1.03	0.78	0.77	0.63	11263	778	10	260	0	0	0	logfile
✔	8U9Y	42041	2025-06-11	2023-09-20	3.7	4.00	3.72	3.9	0.005	0.88	0.0	0.07	23.72	0.01	2.079	7.40	0.14	9.6	90.4	0.0	-0.76	0.72	0.75	2.67	3.9	0.003	0.71	0.0	0.04	16.88	0.01	2.391	6.63	2.37	7.9	92.0	0.1	-0.33	1.66	0.68	0.73	2.15	12951	881	10	0	14	0	6188	logfile
✔	8UA8	42054	2025-06-28	2023-09-20	3.7	2.76	3.58	3.0	0.014	1.40	2.0	0.07	18.92	0.01	1.974	8.52	1.19	0.4	99.2	0.4	-1.98	0.46	0.79	2.58	3.1	0.004	0.84	0.0	0.05	17.72	0.01	2.277	11.87	6.08	6.2	93.6	0.2	-1.32	0.92	0.46	0.79	2.37	33212	4267	32	0	33	0	0	logfile

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