Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UA3	42049	2025-06-04	2023-09-20	3.8	4.06	3.83	4.0	0.007	0.92	0.0	0.05	18.05	0.01	2.166	12.30	0.60	7.7	91.8	0.5	-2.26	0.68	0.80	2.08	4.0	0.004	0.77	0.0	0.05	18.44	0.00	2.559	8.01	3.21	7.8	92.0	0.2	-1.57	1.10	0.71	0.82	2.28	4450	570	3	0	0	0	0	logfile
✔	8WG8	37505	2025-06-06	2023-09-20	2.71	3.54	2.73	3.3	0.005	0.68	0.0	0.05	13.93	0.00	2.170	7.15	2.13	3.8	96.2	0.0	0.12	0.64	0.79	2.81	3.3	0.006	1.00	1.0	0.04	15.74	0.00	2.283	7.65	2.83	3.8	96.2	0.0	0.75	0.51	0.63	0.79	2.36	8043	1037	6	0	0	0	0	logfile
✔	8U9Y	42041	2025-06-11	2023-09-20	3.7	4.00	3.72	3.9	0.005	0.88	0.0	0.07	23.72	0.01	2.079	7.40	0.14	9.6	90.4	0.0	-0.76	0.72	0.75	2.67	3.9	0.003	0.71	0.0	0.04	16.88	0.01	2.391	6.63	2.37	7.9	92.0	0.1	-0.33	1.66	0.68	0.73	2.15	12951	881	10	0	14	0	6188	logfile
✘	8WG9	37506	2025-06-10	2023-09-20	4.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11806	1511	3	0	1	0	0	logfile
✔	8UAD	42060	2025-06-10	2023-09-20	2.77	2.99	2.87	3.0	0.009	1.04	0.0	0.06	20.43	0.01	2.216	4.24	0.71	3.6	96.4	0.0	-0.82	0.72	0.79	3.97	3.0	0.004	0.70	0.0	0.04	14.82	0.00	2.473	2.65	1.65	2.6	97.4	0.0	0.21	0.98	0.69	0.84	3.45	12318	1533	24	0	48	0	0	logfile
✔	8WG3	37501	2025-06-05	2023-09-20	3.4	3.61	3.39	3.6	0.009	1.47	1.0	0.08	16.49	0.01	2.528	0.86	3.30	5.6	94.4	0.0	-2.32	0.50	0.75	2.29	3.6	0.003	0.68	0.0	0.04	16.06	0.00	2.382	7.33	2.68	3.9	96.1	0.0	1.18	2.31	0.56	0.77	1.46	4585	548	2	0	4	0	0	logfile
✔	8WG7	37504	2025-06-06	2023-09-20	2.54	3.39	2.59	3.2	0.003	0.54	0.0	0.04	13.04	0.00	2.167	8.69	0.12	3.6	96.2	0.3	1.50	0.67	0.78	2.51	3.2	0.003	0.64	0.0	0.04	16.00	0.00	2.510	7.76	2.67	3.7	96.3	0.0	1.66	0.42	0.65	0.78	2.25	8123	1030	5	0	0	0	0	logfile
✔	8WG5	37503	2025-06-13	2023-09-20	3.05	3.73	3.03	3.0	0.003	0.59	0.0	0.04	26.06	0.00	2.099	12.21	0.32	2.6	97.4	0.0	1.36	0.83	0.71	0.29	3.0	0.008	1.06	2.0	0.05	26.91	0.01	2.051	13.67	2.74	2.8	97.2	0.0	1.60	1.03	0.90	0.86	1.09	14965	1135	12	294	0	0	0	logfile
✔	8WFL	37495	2025-06-04	2023-09-19	3.03	3.10	3.19	3.5	0.009	0.81	0.0	0.07	17.69	0.00	2.223	11.05	0.21	6.8	93.2	0.0	-0.36	0.54	0.79	2.07	3.2	0.003	0.58	0.0	0.04	18.12	0.00	2.584	7.52	6.64	5.3	94.7	0.0	0.50	0.34	0.52	0.78	2.08	4414	552	2	0	1	0	0	logfile
✔	8WFK	37494	2025-06-04	2023-09-19	3.22	3.53	3.35	3.6	0.020	1.28	0.0	0.04	16.76	0.00	2.137	5.06	0.00	5.0	95.0	0.0	-1.97	0.54	0.85	2.36	3.6	0.003	0.60	0.0	0.04	16.75	0.00	2.330	3.80	3.47	5.0	95.0	0.0	-0.09	0.39	0.59	0.87	1.96	4371	546	2	0	4	0	0	logfile
✘	8WFB	37489	2025-06-09	2023-09-19	3.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10288	1002	4	100	2	0	0	logfile
✔	8WFi	37492	2025-06-04	2023-09-19	2.58	2.82	2.57	2.8	0.002	0.57	0.0	0.04	12.58	0.00	2.278	2.56	0.00	2.4	97.6	0.0	1.63	0.62	0.81	3.69	2.8	0.003	0.55	0.0	0.04	15.09	0.00	2.203	2.33	0.88	2.6	97.4	0.0	1.94	0.89	0.65	0.84	3.57	4347	543	3	0	3	37	0	logfile
✔	8WFN	37497	2025-06-25	2023-09-19	4.48	5.02	5.21	4.5	0.003	0.70	0.0	0.05	15.00	0.01	2.228	7.72	5.17	3.7	96.1	0.1	-2.04	0.82	0.77	—	4.5	0.003	0.60	0.0	0.04	13.56	0.00	2.398	14.90	0.00	4.9	95.0	0.1	0.03	0.62	0.83	0.80	—	29532	3573	8	0	0	0	0	logfile
✔	8WF8	37486	2025-06-08	2023-09-19	2.59	2.77	2.60	2.8	0.010	1.72	3.0	0.09	16.81	0.01	2.070	0.98	1.14	1.9	98.1	0.0	-1.24	0.69	0.89	5.74	2.8	0.003	0.53	0.0	0.04	17.57	0.00	2.272	3.20	1.14	1.1	98.9	0.0	2.48	0.40	0.74	0.90	5.21	9955	1066	3	55	1	0	0	logfile
✔	8WF9	37487	2025-06-08	2023-09-19	3.13	3.34	3.18	3.3	0.010	1.78	8.0	0.10	17.42	0.01	2.129	2.17	3.07	1.5	98.4	0.1	-1.03	0.58	0.75	4.04	3.3	0.002	0.49	0.0	0.03	18.09	0.00	2.577	4.61	2.09	1.6	98.4	0.0	2.75	0.64	0.68	0.83	2.37	9816	1002	4	72	1	0	0	logfile
✔	8WEJ	37477	2025-06-10	2023-09-18	2.79	2.58	2.84	3.0	0.007	0.91	0.0	0.05	14.70	0.01	1.991	3.56	2.33	3.6	96.4	0.0	-0.11	0.72	0.78	4.06	3.0	0.004	0.65	0.0	0.04	16.49	0.00	1.955	10.31	2.71	2.9	97.1	0.0	0.21	1.15	0.70	0.79	3.48	10659	1336	11	0	12	1	0	logfile
✔	8U8Z	42030	2025-06-06	2023-09-18	3.25	4.03	3.29	3.8	0.003	0.66	0.0	0.05	17.59	0.01	2.082	10.48	0.91	2.2	97.8	0.0	0.97	0.87	0.82	2.07	3.7	0.002	0.59	0.0	0.04	17.97	0.00	2.599	7.46	2.72	2.2	97.8	0.0	0.80	0.88	0.87	0.85	2.20	8147	1034	4	0	2	0	0	logfile
✔	8U8V	42028	2025-06-10	2023-09-18	2.74	2.20	—	2.2	0.005	0.89	0.0	0.07	18.50	0.01	2.092	6.55	0.46	4.0	96.0	0.0	-1.29	0.59	0.54	2.22	2.1	0.005	0.72	0.0	0.04	19.74	0.01	1.950	7.25	3.20	4.9	95.1	0.0	-0.28	0.57	0.76	0.75	1.85	11956	1392	7	61	2	0	0	logfile
✘	8U8Y	42029	2025-06-19	2023-09-18	2.1	2.25	2.12	2.3	0.007	0.75	0.0	0.05	17.23	0.01	2.328	2.24	1.76	2.6	97.4	0.0	0.39	0.74	0.86	5.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22616	2936	16	0	16	0	0	logfile
✔	8U8o	42026	2025-06-26	2023-09-18	2.4	2.72	2.39	2.3	0.006	0.78	0.0	0.05	18.03	0.00	2.256	3.62	1.24	3.4	96.6	0.0	0.12	0.82	0.79	4.19	2.3	0.004	0.69	0.0	0.04	16.96	0.00	2.345	3.61	1.82	2.6	97.4	0.0	1.04	1.39	0.88	0.91	3.53	30080	3856	16	0	32	0	0	logfile

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