Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8U8Y	42029	2025-06-19	2023-09-18	2.1	2.25	2.12	2.3	0.007	0.75	0.0	0.05	17.23	0.01	2.328	2.24	1.76	2.6	97.4	0.0	0.39	0.74	0.86	5.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22616	2936	16	0	16	0	0	logfile
✔	8WE7	37473	2025-06-18	2023-09-17	3.2	3.60	3.49	3.6	0.004	0.76	1.0	0.04	18.92	0.01	2.198	12.87	0.74	9.9	89.1	1.0	-2.42	0.53	0.76	2.05	3.6	0.003	0.71	0.0	0.04	17.86	0.00	2.276	8.43	3.06	9.1	90.5	0.4	-1.49	0.41	0.57	0.80	1.68	21014	2583	11	0	20	0	0	logfile
✔	8WE4	37471	2025-06-13	2023-09-17	2.91	2.35	2.96	2.1	0.006	0.71	0.0	0.05	13.30	0.01	1.872	7.79	0.45	5.9	93.6	0.5	-0.51	0.76	0.76	3.54	2.1	0.003	0.65	0.0	0.04	15.73	0.00	2.007	6.93	1.59	5.6	94.2	0.2	-0.39	0.93	0.78	0.79	2.58	8281	1017	8	0	11	0	0	logfile
✔	8U8F	42023	2025-06-12	2023-09-17	3.49	3.84	3.55	3.9	0.003	0.54	0.0	0.04	15.46	0.01	2.124	7.60	0.13	2.5	97.4	0.1	1.41	0.59	0.68	1.19	3.9	0.002	0.56	0.0	0.04	16.26	0.00	2.388	6.38	2.15	3.8	96.2	0.0	0.68	0.46	0.58	0.72	1.65	13891	889	5	0	1	0	6925	logfile
✔	8WDY	37467	2025-06-10	2023-09-16	2.69	2.29	2.80	2.1	0.005	0.77	0.0	0.05	14.72	0.01	2.000	5.79	1.44	3.8	96.1	0.1	0.26	0.80	0.80	3.74	2.1	0.003	0.59	0.0	0.04	16.08	0.00	2.056	3.68	1.73	2.5	97.3	0.1	0.75	0.38	0.82	0.83	3.17	6548	791	6	0	11	0	0	logfile
✔	8QKo	18468	2025-06-16	2023-09-16	3.73	4.47	3.64	4.1	0.003	0.52	0.0	0.03	13.37	0.01	1.736	9.97	3.14	2.7	97.3	0.0	2.37	0.51	0.74	0.50	4.1	0.003	0.69	0.0	0.04	16.54	0.00	2.506	9.71	3.58	2.2	97.8	0.0	2.34	2.56	0.54	0.86	2.14	18492	2268	12	0	0	0	0	logfile
✔	8WE1	37470	2025-06-10	2023-09-16	2.47	2.24	2.54	2.0	0.005	0.62	0.0	0.04	18.67	0.00	2.001	5.63	3.89	4.1	95.9	0.0	0.67	0.80	0.79	2.48	2.0	0.003	0.64	0.0	0.04	17.09	0.00	2.194	4.69	3.31	4.2	95.8	0.0	0.36	0.28	0.82	0.82	2.56	6559	791	6	0	11	0	0	logfile
✔	8WDZ	37468	2025-06-10	2023-09-16	2.71	2.24	2.74	2.0	0.005	0.61	0.0	0.04	13.56	0.00	2.004	5.55	0.43	3.7	96.3	0.0	0.07	0.78	0.79	3.27	2.0	0.003	0.58	0.0	0.04	15.71	0.00	2.150	3.91	1.01	2.4	97.5	0.1	0.44	0.92	0.82	0.83	2.72	6559	791	6	0	11	0	0	logfile
✔	8WDU	37465	2025-06-22	2023-09-16	2.24	1.99	2.27	2.2	0.022	1.89	0.0	0.06	24.81	0.02	1.765	13.88	1.73	1.7	98.3	0.0	2.02	0.62	0.83	5.33	2.2	0.007	0.77	0.0	0.04	19.16	0.00	1.994	10.37	2.19	1.8	98.2	0.0	2.12	0.31	0.70	0.88	5.22	26274	2575	98	0	113	334	0	logfile
✔	8U89	42018	2025-06-08	2023-09-16	3.3	3.66	3.52	3.7	0.003	0.70	0.0	0.04	16.18	0.01	2.091	8.51	0.54	2.4	97.6	0.0	0.98	0.67	0.79	1.47	3.7	0.003	0.60	0.0	0.04	16.91	0.00	2.147	7.86	2.63	2.8	97.2	0.0	1.40	1.15	0.68	0.80	1.39	9928	1241	4	0	2	0	0	logfile
✔	8WDV	37466	2025-06-22	2023-09-16	2.24	2.37	2.20	2.3	0.022	1.86	0.0	0.06	22.60	0.02	1.372	11.84	1.77	1.8	98.2	0.0	2.38	0.79	0.89	5.99	2.3	0.006	0.65	0.0	0.04	16.79	0.00	1.814	9.32	1.63	1.7	98.3	0.0	2.90	0.89	0.79	0.91	5.10	26261	2585	98	0	111	354	0	logfile
✔	8U8B	42020	2025-06-21	2023-09-16	3.7	4.26	3.90	4.0	0.004	0.77	0.0	0.05	13.63	0.00	2.238	4.96	0.62	7.3	92.7	0.0	-2.19	0.73	0.63	1.05	4.0	0.003	0.62	0.0	0.04	14.78	0.00	2.493	7.12	1.83	5.6	94.4	0.0	-0.30	0.68	0.82	0.78	0.85	24694	3424	6	2	2	0	0	logfile
✔	8WE0	37469	2025-06-10	2023-09-16	2.8	2.28	2.84	2.0	0.008	1.17	3.0	0.24	17.15	0.03	2.000	17.16	8.20	10.0	86.7	3.3	-1.66	0.76	0.75	3.40	2.0	0.003	0.71	0.0	0.04	16.99	0.01	1.968	5.88	3.45	7.2	92.5	0.3	-0.14	1.34	0.81	0.80	2.71	6538	791	5	0	10	0	0	logfile
✔	8U7P	41988	2025-06-12	2023-09-15	4.2	4.43	4.09	4.2	0.004	0.95	0.0	0.05	19.29	0.01	2.214	8.68	0.00	1.6	98.4	0.0	-0.20	0.64	0.82	—	4.2	0.003	0.76	0.0	0.04	13.45	0.00	2.286	11.22	0.00	1.8	98.2	0.0	1.36	0.51	0.65	0.82	—	14086	1808	4	0	9	0	0	logfile
✔	8QKK	18464	2025-06-05	2023-09-15	3.23	3.44	3.30	3.6	0.002	0.49	0.0	0.04	14.14	0.00	2.132	9.00	0.00	2.9	97.1	0.0	2.28	0.62	0.79	1.22	3.6	0.006	1.26	2.0	0.05	15.90	0.01	2.295	9.53	2.02	2.2	97.8	0.0	1.88	0.79	0.64	0.79	1.11	5581	730	1	0	0	0	0	logfile
✔	8U7R	41990	2025-06-14	2023-09-15	3.7	3.99	3.68	3.9	0.003	0.68	0.0	0.04	18.39	0.00	2.237	6.48	0.00	1.8	98.2	0.0	1.47	0.69	0.79	0.87	3.9	0.003	0.56	0.0	0.04	16.45	0.00	2.538	6.19	2.19	1.6	98.4	0.0	2.52	1.14	0.68	0.80	0.84	15601	1971	4	0	7	0	0	logfile
✔	8U7o	41987	2025-06-13	2023-09-15	3.9	4.14	3.88	4.1	0.003	0.65	0.0	0.04	20.60	0.00	2.218	5.49	0.00	1.7	98.3	0.0	1.09	0.65	0.79	0.74	4.0	0.006	0.79	0.0	0.04	14.56	0.00	2.372	8.71	2.84	2.6	97.4	0.0	2.01	0.50	0.67	0.82	0.60	14929	1959	4	0	9	0	0	logfile
✔	8U7V	42012	2025-06-26	2023-09-15	3.3	3.67	3.36	3.7	0.007	1.18	0.0	0.09	20.78	0.00	2.127	7.94	0.85	3.3	96.5	0.2	-0.95	0.64	0.83	2.41	3.7	0.003	0.63	0.0	0.04	18.41	0.00	2.470	5.19	2.41	3.8	96.1	0.2	0.17	0.52	0.65	0.85	2.11	29680	3768	16	0	40	0	0	logfile
✔	8U7Q	41989	2025-06-26	2023-09-15	3.3	3.62	3.25	3.6	0.006	1.09	0.0	0.06	20.74	0.00	2.325	6.75	0.73	3.3	96.5	0.2	-0.67	0.79	0.83	2.15	3.6	0.003	0.62	0.0	0.04	18.11	0.00	2.431	5.39	4.05	3.3	96.5	0.2	0.46	0.52	0.80	0.86	1.82	30520	3872	16	0	40	0	0	logfile
✔	8U7M	41986	2025-06-24	2023-09-15	3.1	3.40	3.15	3.4	0.007	1.13	0.0	0.09	20.22	0.01	2.203	10.32	0.27	3.8	96.2	0.0	-1.11	0.68	0.69	2.25	3.4	0.003	0.65	0.0	0.04	18.54	0.00	2.460	8.46	3.62	3.2	96.8	0.0	-0.29	0.56	0.69	0.71	1.85	28336	3608	16	0	40	0	0	logfile

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