Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U7D	41979	2025-06-13	2023-09-15	3.5	3.73	3.48	3.7	0.004	0.63	0.0	0.04	17.90	0.01	2.308	5.54	0.00	2.6	97.4	0.0	0.76	0.62	0.80	1.14	3.7	0.003	0.63	0.0	0.04	16.46	0.00	2.525	8.02	4.18	2.7	97.3	0.0	2.06	0.53	0.63	0.83	1.00	14924	1846	4	0	7	0	0	logfile
✔	8U7Q	41989	2025-06-26	2023-09-15	3.3	3.62	3.25	3.6	0.006	1.09	0.0	0.06	20.74	0.00	2.325	6.75	0.73	3.3	96.5	0.2	-0.67	0.79	0.83	2.15	3.6	0.003	0.62	0.0	0.04	18.11	0.00	2.431	5.39	4.05	3.3	96.5	0.2	0.46	0.52	0.80	0.86	1.82	30520	3872	16	0	40	0	0	logfile
✔	8QKK	18464	2025-06-05	2023-09-15	3.23	3.44	3.30	3.6	0.002	0.49	0.0	0.04	14.14	0.00	2.132	9.00	0.00	2.9	97.1	0.0	2.28	0.62	0.79	1.22	3.6	0.006	1.26	2.0	0.05	15.90	0.01	2.295	9.53	2.02	2.2	97.8	0.0	1.88	0.79	0.64	0.79	1.11	5581	730	1	0	0	0	0	logfile
✔	8QKi	18463	2025-06-08	2023-09-15	3.46	4.02	3.31	3.8	0.004	0.75	0.0	0.05	12.59	0.00	2.071	8.10	0.54	3.4	96.6	0.0	2.14	0.60	0.80	2.58	3.8	0.003	0.65	0.0	0.04	14.43	0.00	2.450	7.04	1.43	3.0	97.0	0.0	3.50	0.94	0.59	0.88	2.52	10188	1242	12	0	6	0	0	logfile
✔	8U73	41967	2025-06-14	2023-09-14	3.1	3.25	3.07	3.2	0.004	0.72	0.0	0.04	18.62	0.00	2.252	7.19	0.00	1.9	98.1	0.0	0.84	0.66	0.76	1.57	3.2	0.003	0.51	0.0	0.04	16.80	0.00	2.523	5.63	2.74	1.8	98.2	0.0	2.25	0.25	0.69	0.81	1.39	16199	2006	4	0	7	0	0	logfile
✔	8WCX	37451	2025-06-08	2023-09-14	3.09	3.34	3.13	3.3	0.005	0.74	0.0	0.04	17.06	0.00	1.945	12.69	0.42	4.7	95.1	0.2	-0.07	0.51	0.71	2.46	3.3	0.003	0.57	0.0	0.04	16.77	0.00	1.904	5.99	3.43	5.0	94.9	0.1	0.94	0.51	0.73	0.89	1.92	9199	1199	4	0	4	0	0	logfile
✔	8U75	41969	2025-06-13	2023-09-14	3.1	3.29	3.12	3.3	0.004	0.67	0.0	0.04	19.44	0.00	2.280	5.74	0.00	2.2	97.8	0.0	1.08	0.64	0.79	1.81	3.3	0.002	0.51	0.0	0.04	16.18	0.00	2.563	5.87	2.00	2.0	98.0	0.0	2.51	0.27	0.65	0.82	1.49	14656	1814	4	0	7	0	0	logfile
✔	8QK3	18455	2025-06-06	2023-09-14	3.2	4.00	3.11	3.4	0.008	0.70	0.0	0.04	12.49	0.00	1.913	6.28	0.12	3.1	96.9	0.0	-0.49	0.87	0.81	3.51	3.4	0.004	0.75	0.0	0.04	14.73	0.00	2.473	9.59	2.83	4.2	95.8	0.0	-0.68	0.92	0.87	0.86	3.18	7535	955	5	0	0	0	0	logfile
✔	8WD6	37455	2025-06-06	2023-09-14	2.87	3.11	2.88	3.2	0.003	0.56	1.0	0.04	16.49	0.00	2.431	5.56	0.12	2.7	97.3	0.0	1.60	0.57	0.77	1.54	3.2	0.004	0.62	0.0	0.04	17.50	0.00	2.521	5.56	3.58	2.8	97.2	0.0	1.48	1.20	0.57	0.78	1.37	7973	1025	2	0	0	0	0	logfile
✔	8WDB	37460	2025-06-13	2023-09-14	2.86	3.12	2.90	3.0	0.008	0.89	2.0	0.05	13.65	0.01	2.006	4.68	0.55	7.9	91.7	0.4	-2.94	0.74	0.90	4.03	3.0	0.005	0.69	0.0	0.04	15.48	0.00	1.922	3.75	1.82	6.1	93.8	0.1	-0.13	0.36	0.73	0.91	3.28	12322	1619	5	0	4	0	0	logfile
✔	8QJY	18454	2025-06-05	2023-09-14	3.5	4.18	3.43	3.7	0.003	0.61	0.0	0.05	13.67	0.00	1.682	8.80	0.14	2.7	97.3	0.0	-0.59	0.85	0.80	3.37	3.9	0.003	0.70	0.0	0.04	15.42	0.00	2.466	7.99	3.52	3.3	96.7	0.0	-0.49	0.93	0.87	0.84	2.79	6287	798	4	0	0	0	0	logfile
✔	8U6Z	41964	2025-06-14	2023-09-14	3.8	4.17	3.84	4.1	0.004	0.72	0.0	0.04	15.93	0.00	2.200	4.97	0.00	2.9	97.1	0.0	1.55	0.68	0.81	0.77	4.0	0.003	0.59	0.0	0.04	15.64	0.00	2.523	6.54	1.12	2.2	97.8	0.0	2.55	0.29	0.68	0.81	1.01	16046	1998	4	0	7	0	0	logfile
✔	8U71	41965	2025-06-14	2023-09-14	3.9	4.31	3.97	4.1	0.005	0.78	0.0	0.05	16.22	0.00	2.257	7.27	0.06	2.8	97.2	0.0	0.94	0.70	0.82	0.75	4.1	0.003	0.62	0.0	0.04	15.25	0.00	2.528	7.80	1.29	2.6	97.4	0.0	2.34	0.32	0.69	0.82	0.65	16033	1990	4	0	7	0	0	logfile
✔	8U72	41966	2025-06-26	2023-09-14	3.15	2.72	—	3.3	0.004	0.64	0.0	0.05	19.17	0.01	2.092	7.32	0.45	8.9	91.0	0.1	-1.54	0.87	0.85	2.96	3.3	0.002	0.58	0.0	0.04	18.82	0.00	2.112	5.11	2.85	8.0	92.0	0.0	-0.54	0.32	0.87	0.85	2.87	29712	3469	31	148	4	57	0	logfile
✔	8WCW	37450	2025-06-08	2023-09-14	3.11	3.62	3.20	3.5	0.006	0.73	0.0	0.04	14.37	0.00	2.219	9.14	0.21	10.0	90.0	0.0	-3.12	0.65	0.85	2.27	3.5	0.003	0.60	0.0	0.04	15.66	0.00	2.435	6.46	2.41	7.8	92.2	0.0	0.40	0.92	0.60	0.81	1.74	9062	1189	2	0	0	0	0	logfile
✔	8QJX	18453	2025-06-06	2023-09-14	3.3	3.68	3.02	3.3	0.005	0.59	0.0	0.05	13.62	0.00	1.871	5.41	0.00	3.7	96.3	0.0	-0.83	0.88	0.87	4.13	3.3	0.009	0.76	0.0	0.05	15.22	0.00	2.416	8.25	1.80	3.6	96.4	0.0	-0.58	0.78	0.88	0.89	3.59	7868	997	5	0	0	0	0	logfile
✔	8WD9	37458	2025-06-13	2023-09-14	3.35	3.68	3.40	3.6	0.007	0.93	6.0	0.06	14.66	0.01	2.032	9.36	1.02	12.3	87.4	0.2	-4.16	0.75	0.88	2.81	3.6	0.003	0.69	0.0	0.04	15.15	0.00	2.384	5.54	2.60	8.0	92.0	0.0	-1.13	0.40	0.75	0.89	2.24	12355	1626	5	0	2	0	0	logfile
✔	8QK6	18457	2025-06-08	2023-09-14	3.18	3.70	2.82	3.4	0.005	0.56	0.0	0.05	9.59	0.00	2.154	4.31	1.09	1.5	98.5	0.0	4.06	0.63	0.76	2.53	3.4	0.003	0.56	0.0	0.04	13.10	0.00	2.404	6.41	1.46	2.2	97.8	0.0	3.91	0.99	0.60	0.90	2.46	10056	1230	12	0	6	0	0	logfile
✔	8WDA	37459	2025-06-13	2023-09-14	3.26	3.59	3.32	3.5	0.005	0.72	1.0	0.05	14.24	0.00	2.231	7.11	0.55	8.9	91.0	0.1	-4.40	0.75	0.88	2.94	3.5	0.002	0.63	0.0	0.04	15.22	0.00	2.433	4.38	1.34	7.1	92.9	0.0	-1.10	0.33	0.72	0.89	2.50	12359	1626	6	0	2	0	0	logfile
✔	8WD8	37457	2025-06-12	2023-09-14	2.9	3.05	2.88	3.1	0.004	0.70	0.0	0.05	19.79	0.01	1.852	3.54	0.65	3.5	96.5	0.0	-1.91	0.77	0.89	2.83	3.1	0.002	0.51	0.0	0.04	19.91	0.00	1.959	5.24	1.81	2.5	97.5	0.0	1.12	0.36	0.70	0.88	3.20	13667	1500	9	64	7	0	0	logfile

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