Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U64	41943	2025-06-06	2023-09-13	3.13	2.26	3.11	1.9	0.004	0.59	0.0	0.04	18.15	0.00	2.121	11.26	0.48	5.5	94.5	0.0	-0.22	0.75	0.74	2.09	1.9	0.003	0.61	0.0	0.04	18.30	0.00	2.550	8.97	2.53	4.0	96.0	0.0	0.54	0.31	0.75	0.74	1.99	7674	970	4	0	2	0	0	logfile
✔	8WCQ	37446	2025-06-12	2023-09-13	3.35	3.66	3.30	3.6	0.003	0.52	0.0	0.04	22.28	0.01	2.278	5.98	0.00	2.6	97.4	0.0	0.24	0.66	0.67	1.42	3.5	0.005	0.65	0.0	0.05	18.89	0.01	2.478	3.91	1.07	3.1	96.9	0.0	0.58	0.54	0.78	0.86	2.36	14130	1560	10	0	45	0	0	logfile
✔	8U5X	41935	2025-06-04	2023-09-13	2.79	3.27	2.82	3.2	0.008	0.87	0.0	0.05	12.00	0.01	2.428	4.07	0.61	3.4	96.6	0.0	-0.95	0.72	0.82	3.61	3.2	0.004	0.83	0.0	0.05	15.83	0.00	2.560	14.73	1.22	1.9	98.1	0.0	2.01	2.63	0.69	0.81	2.77	4453	569	2	0	1	0	0	logfile
✔	8U66	41946	2025-06-25	2023-09-13	2.21	2.31	2.27	2.3	0.004	0.56	0.0	0.09	16.75	0.00	1.869	2.66	0.28	3.4	96.6	0.0	2.01	0.71	0.83	4.97	2.3	0.005	0.69	0.0	0.04	17.34	0.00	1.847	5.32	2.30	3.9	96.1	0.0	1.10	0.27	0.77	0.87	5.20	29365	3584	24	0	16	981	0	logfile
✔	8WCS	37448	2025-06-08	2023-09-13	3.1	3.46	3.32	3.5	0.004	0.77	0.0	0.05	21.59	0.01	2.148	4.70	0.74	8.6	91.4	0.0	-2.55	0.70	0.76	1.66	3.5	0.003	0.62	0.0	0.04	21.32	0.00	2.157	8.59	3.27	9.5	90.5	0.0	-0.40	0.33	0.67	0.78	1.85	10096	1044	3	66	1	0	0	logfile
✔	8U65	41944	2025-06-06	2023-09-13	3.01	2.26	3.05	1.9	0.003	0.58	0.0	0.04	18.68	0.00	2.164	12.11	0.36	4.8	95.2	0.0	-0.65	0.71	0.67	1.30	1.5	0.003	0.69	0.0	0.04	18.96	0.00	2.402	11.51	3.50	4.0	96.0	0.0	-0.99	0.74	0.71	0.67	1.61	7636	967	4	0	2	0	0	logfile
✔	8U62	41941	2025-06-06	2023-09-13	3.3	2.42	3.25	2.1	0.003	0.61	0.0	0.04	18.21	0.00	2.175	8.41	0.59	2.8	97.2	0.0	0.96	0.73	0.77	2.12	2.1	0.004	0.61	0.0	0.04	18.67	0.00	2.453	8.47	4.70	3.2	96.8	0.0	1.43	0.73	0.73	0.77	1.98	7884	998	4	0	2	0	0	logfile
✔	8WCN	37444	2025-06-05	2023-09-13	3.2	2.54	2.94	3.1	0.004	0.72	0.0	0.04	16.65	0.00	1.902	13.05	0.50	2.7	97.3	0.0	0.54	0.72	0.71	1.25	3.0	0.003	0.73	0.0	0.04	17.27	0.00	1.944	8.95	4.99	3.1	96.9	0.0	1.48	0.54	0.76	0.74	1.13	6086	757	4	0	6	0	0	logfile
✔	8U63	41942	2025-06-06	2023-09-13	3.01	2.25	2.99	2.0	0.003	0.56	0.0	0.04	17.94	0.00	2.151	8.88	0.48	2.8	97.2	0.0	-0.74	0.77	0.79	2.41	2.0	0.005	0.66	0.0	0.04	18.53	0.01	2.575	9.26	3.33	2.6	97.4	0.0	0.92	0.35	0.77	0.80	2.68	7758	984	4	0	2	0	0	logfile
✔	8QJF	18446	2025-06-16	2023-09-13	2.86	3.33	2.60	3.1	0.005	0.58	0.0	0.05	10.05	0.00	2.238	3.68	0.57	1.6	98.4	0.0	3.35	0.65	0.74	2.87	3.0	0.006	0.77	2.0	0.04	13.81	0.00	2.198	6.07	0.95	1.5	98.5	0.0	3.60	0.71	0.64	0.92	3.04	19164	2352	24	0	12	0	0	logfile
✔	8QJU	18449	2025-06-07	2023-09-13	3.5	2.71	3.48	3.8	0.007	1.45	1.0	0.08	16.45	0.01	2.243	31.96	10.42	8.8	89.1	2.1	-2.58	0.83	0.85	2.37	3.8	0.004	0.76	0.0	0.04	17.12	0.00	2.524	12.73	2.95	7.8	91.7	0.5	-0.46	1.71	0.77	0.77	1.97	8578	1045	1	0	0	0	0	logfile
✔	8WCP	37445	2025-06-04	2023-09-13	3.28	3.36	2.32	3.4	0.005	0.83	0.0	0.06	10.78	0.00	2.482	16.18	0.00	11.1	88.9	0.0	-5.74	0.39	0.86	4.76	3.4	0.003	0.56	0.0	0.05	13.86	0.00	2.633	3.02	2.00	8.0	92.0	0.0	-3.91	0.94	0.37	0.87	5.33	1536	168	9	0	57	0	0	logfile
✔	8U5V	41934	2025-06-04	2023-09-13	2.77	3.23	2.79	3.2	0.008	1.07	1.0	0.06	11.86	0.01	2.429	2.55	1.24	2.0	98.0	0.0	-0.23	0.72	0.83	3.42	3.1	0.004	0.82	0.0	0.05	15.89	0.00	2.519	13.10	1.86	1.6	98.4	0.0	2.26	1.74	0.70	0.83	3.23	4397	556	2	0	2	0	0	logfile
✘	8WCR	37447	2025-06-12	2023-09-13	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14615	1560	15	0	50	270	0	logfile
✔	8QJJ	18448	2025-06-06	2023-09-13	3.35	3.35	3.18	3.3	0.012	1.98	0.0	0.10	12.60	0.01	2.538	0.43	0.00	2.3	97.7	0.0	-2.06	0.33	0.77	5.23	3.3	0.002	0.59	0.0	0.05	16.23	0.00	2.489	2.99	0.76	4.6	95.4	0.0	-1.69	2.31	0.33	0.79	4.24	7032	450	6	0	0	0	3588	logfile
✔	8U5Y	41939	2025-06-29	2023-09-13	3.01	3.34	—	3.2	0.003	0.57	0.0	0.04	14.42	0.00	2.027	5.30	0.57	4.0	96.0	0.0	-1.43	0.86	0.83	3.28	3.2	0.003	0.53	0.0	0.04	14.99	0.00	2.381	4.06	0.47	4.5	95.5	0.0	-1.17	0.49	0.86	0.83	3.05	34491	2089	4	16	0	0	17152	logfile
✔	8QJH	18447	2025-06-14	2023-09-13	2.91	3.37	2.83	3.2	0.002	0.41	0.0	0.04	9.69	0.00	2.248	8.45	1.29	1.2	98.8	0.0	3.25	0.59	0.88	3.33	3.3	0.003	0.55	0.0	0.04	15.23	0.00	2.262	4.76	3.06	1.5	98.5	0.0	3.20	0.65	0.61	0.90	2.82	16584	2076	12	0	0	0	0	logfile
✔	8U5N	41929	2025-06-05	2023-09-12	3.0	3.95	2.94	3.8	0.006	0.86	0.0	0.05	12.97	0.01	2.281	1.83	0.80	3.0	97.0	0.0	-0.95	0.55	0.67	0.23	3.7	0.005	0.96	0.0	0.05	16.55	0.00	2.385	15.76	2.20	2.3	97.7	0.0	0.93	4.58	0.55	0.77	1.28	4535	577	2	0	1	0	0	logfile
✔	8U56	41913	2025-06-07	2023-09-12	2.75	3.46	2.81	3.3	0.007	0.96	0.0	0.05	13.55	0.01	2.398	4.25	0.00	1.5	98.5	0.0	-0.73	0.78	0.80	3.21	3.3	0.005	0.82	0.0	0.04	15.87	0.00	2.455	13.65	2.44	1.1	98.9	0.0	2.45	2.41	0.75	0.81	2.36	8588	1082	4	0	4	0	0	logfile
✔	8U5C	41916	2025-06-07	2023-09-12	2.68	3.51	2.70	3.3	0.010	1.58	4.0	0.09	13.02	0.01	2.595	1.30	0.62	3.0	97.0	0.0	-0.60	0.68	0.83	3.93	3.3	0.003	0.64	0.0	0.04	14.31	0.00	2.504	7.21	0.72	1.5	98.5	0.0	2.91	0.56	0.62	0.80	2.71	9032	1150	4	0	4	0	0	logfile

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