Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U5N	41929	2025-06-05	2023-09-12	3.0	3.95	2.94	3.8	0.006	0.86	0.0	0.05	12.97	0.01	2.281	1.83	0.80	3.0	97.0	0.0	-0.95	0.55	0.67	0.23	3.7	0.005	0.96	0.0	0.05	16.55	0.00	2.385	15.76	2.20	2.3	97.7	0.0	0.93	4.58	0.55	0.77	1.28	4535	577	2	0	1	0	0	logfile
✔	8U58	41914	2025-06-07	2023-09-12	2.45	3.14	2.64	2.9	0.007	1.06	0.0	0.05	11.80	0.01	2.518	2.26	0.00	2.0	98.0	0.0	-0.71	0.66	0.71	0.94	3.0	0.005	0.70	0.0	0.04	14.63	0.00	2.527	11.50	1.22	1.3	98.7	0.0	2.65	0.98	0.68	0.82	2.39	8884	1130	4	0	2	0	0	logfile
✔	8U56	41913	2025-06-07	2023-09-12	2.75	3.46	2.81	3.3	0.007	0.96	0.0	0.05	13.55	0.01	2.398	4.25	0.00	1.5	98.5	0.0	-0.73	0.78	0.80	3.21	3.3	0.005	0.82	0.0	0.04	15.87	0.00	2.455	13.65	2.44	1.1	98.9	0.0	2.45	2.41	0.75	0.81	2.36	8588	1082	4	0	4	0	0	logfile
✔	8U5Q	41930	2025-06-06	2023-09-12	2.4	3.32	2.31	3.1	0.006	0.90	0.0	0.05	12.12	0.01	2.402	3.55	0.23	2.7	97.3	0.0	-1.44	0.64	0.81	3.07	3.1	0.004	0.74	0.0	0.04	14.95	0.00	2.505	10.27	1.85	1.1	98.9	0.0	2.46	2.08	0.56	0.78	2.52	7896	1004	4	0	2	0	0	logfile
✔	8U54	41912	2025-06-09	2023-09-12	2.65	3.71	2.66	3.5	0.006	0.79	0.0	0.05	12.07	0.01	2.221	3.48	0.17	3.6	96.4	0.0	-1.34	0.61	0.67	0.86	3.5	0.004	0.85	0.0	0.05	15.42	0.00	2.504	14.70	1.61	2.3	97.7	0.0	1.99	1.58	0.63	0.80	1.69	10745	1359	4	0	2	0	0	logfile
✔	8U5C	41916	2025-06-07	2023-09-12	2.68	3.51	2.70	3.3	0.010	1.58	4.0	0.09	13.02	0.01	2.595	1.30	0.62	3.0	97.0	0.0	-0.60	0.68	0.83	3.93	3.3	0.003	0.64	0.0	0.04	14.31	0.00	2.504	7.21	0.72	1.5	98.5	0.0	2.91	0.56	0.62	0.80	2.71	9032	1150	4	0	4	0	0	logfile
✔	8WC7	37433	2025-06-07	2023-09-11	3.1	3.32	3.10	3.3	0.004	0.60	1.0	0.04	13.83	0.00	2.237	4.93	0.80	4.5	95.5	0.0	-0.58	0.67	0.83	3.30	3.3	0.003	0.56	0.0	0.04	15.57	0.00	2.352	3.31	0.92	4.6	95.4	0.0	0.24	0.92	0.71	0.86	2.93	8532	1122	6	0	1	0	0	logfile
✔	8WCE	37439	2025-06-09	2023-09-11	3.09	3.37	3.24	3.4	0.003	0.64	0.0	0.04	21.71	0.00	2.259	4.16	0.33	9.2	90.8	0.0	-0.41	0.75	0.83	2.64	3.3	0.003	0.62	0.0	0.04	21.67	0.00	2.195	3.96	3.75	9.5	90.5	0.0	0.30	0.89	0.72	0.88	2.53	10350	994	5	97	2	0	0	logfile
✔	8WC6	37432	2025-06-07	2023-09-11	3.2	3.26	3.10	3.3	0.008	0.99	2.0	0.07	13.34	0.01	2.130	8.47	1.10	5.1	94.9	0.0	-0.22	0.72	0.84	3.41	3.3	0.004	0.59	0.0	0.04	15.00	0.00	2.534	2.88	0.99	4.2	95.8	0.0	0.61	0.96	0.72	0.87	3.31	9183	1241	7	0	1	0	0	logfile
✔	8U4R	41892	2025-06-05	2023-09-11	3.1	3.43	3.13	3.4	0.003	0.67	0.0	0.05	14.01	0.01	2.165	4.99	0.00	3.6	96.4	0.0	0.38	0.65	0.85	3.13	3.4	0.003	0.57	0.0	0.04	15.82	0.00	2.534	3.53	1.79	4.4	95.6	0.0	0.81	0.93	0.67	0.88	2.86	4107	513	4	0	1	0	0	logfile
✔	8U4X	41903	2025-06-06	2023-09-11	2.81	2.24	2.91	2.0	0.002	0.56	0.0	0.04	17.69	0.00	2.259	9.77	2.11	2.7	97.3	0.0	0.85	0.78	0.79	1.88	2.1	0.006	1.00	1.0	0.05	18.31	0.01	2.409	10.60	4.22	2.9	97.1	0.0	0.60	0.37	0.79	0.80	2.35	7873	999	4	0	2	0	0	logfile
✔	8WC9	37435	2025-06-06	2023-09-11	3.2	3.47	3.29	3.5	0.007	0.91	3.0	0.06	13.81	0.01	2.205	9.72	1.16	5.5	94.5	0.0	-0.70	0.65	0.83	3.84	3.5	0.002	0.56	0.0	0.04	15.61	0.00	2.533	4.10	1.39	2.7	97.3	0.0	0.18	0.97	0.61	0.83	2.62	8394	1107	6	0	1	0	0	logfile
✔	8WC3	37429	2025-06-06	2023-09-11	3.0	3.02	2.90	3.1	0.006	0.96	2.0	0.07	13.97	0.01	1.356	8.37	1.40	5.2	94.8	0.0	-1.08	0.66	0.73	2.72	3.1	0.003	0.63	0.0	0.04	15.92	0.00	2.516	4.76	3.49	4.5	95.5	0.0	0.22	0.43	0.68	0.83	2.57	8418	1119	6	0	1	0	0	logfile
✔	8WC5	37431	2025-06-06	2023-09-11	3.3	2.84	2.94	3.0	0.010	1.09	3.0	0.08	14.80	0.01	2.206	10.49	1.80	6.6	93.4	0.0	-2.33	0.60	0.68	2.61	3.0	0.003	0.65	0.0	0.04	16.21	0.00	2.503	4.98	1.68	5.8	94.2	0.0	-1.06	0.95	0.62	0.74	1.87	8511	1111	6	0	1	0	0	logfile
✔	8Qi7	18436	2025-06-13	2023-09-11	2.9	3.13	2.98	3.2	0.004	0.65	0.0	0.04	9.14	0.00	2.275	2.18	0.79	6.3	93.4	0.2	-3.83	0.69	0.88	5.75	3.2	0.004	0.71	0.0	0.04	13.52	0.01	2.600	2.59	0.46	4.8	95.2	0.0	0.02	0.94	0.70	0.88	4.49	14609	1848	8	0	0	117	0	logfile
✔	8WC8	37434	2025-06-06	2023-09-11	2.9	3.26	2.95	3.2	0.013	0.85	5.0	0.06	12.53	0.01	2.252	9.20	0.26	2.5	97.5	0.0	1.02	0.66	0.81	3.77	3.2	0.002	0.56	0.0	0.04	15.65	0.00	2.600	8.03	2.22	2.2	97.8	0.0	0.81	0.90	0.57	0.80	3.42	8062	1101	6	0	1	0	0	logfile
✔	8WCA	37436	2025-06-06	2023-09-11	3.48	3.71	3.50	3.7	0.006	0.87	5.0	0.06	13.52	0.01	2.105	10.04	0.89	4.3	95.7	0.0	-0.41	0.66	0.74	1.96	3.7	0.004	0.66	0.0	0.05	15.13	0.00	2.424	6.33	2.41	5.1	94.9	0.0	0.31	0.39	0.69	0.80	1.57	8160	1110	6	0	1	0	0	logfile
✔	8U4P	41890	2025-06-07	2023-09-11	3.15	3.53	3.25	3.5	0.004	0.53	0.0	0.04	14.37	0.00	2.240	4.24	0.00	3.3	96.7	0.0	0.52	0.63	0.84	3.05	3.5	0.003	0.50	0.0	0.04	15.38	0.00	2.489	2.95	1.75	3.1	96.9	0.0	1.10	0.25	0.57	0.84	2.83	7006	892	5	0	2	0	0	logfile
✔	8U4V	41899	2025-06-06	2023-09-11	2.99	3.26	2.62	3.1	0.006	1.12	2.0	0.06	16.56	0.00	2.063	13.44	0.83	3.4	96.6	0.0	0.66	0.71	0.79	3.57	3.1	0.003	0.91	0.0	0.04	16.34	0.00	2.333	7.21	2.35	2.0	98.0	0.0	1.52	1.59	0.83	0.90	3.35	6637	862	8	0	1	3	0	logfile
✔	8WCC	37438	2025-06-04	2023-09-11	3.04	2.88	1.89	3.2	0.017	2.05	5.0	0.15	16.41	0.02	2.464	8.33	2.87	9.2	90.8	0.0	-3.38	0.84	0.81	2.50	3.2	0.004	0.74	0.0	0.04	16.38	0.00	2.567	5.88	3.35	2.3	97.7	0.0	1.17	1.16	0.81	0.79	2.06	2056	270	2	0	1	0	0	logfile

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