Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WCC	37438	2025-06-04	2023-09-11	3.04	2.88	1.89	3.2	0.017	2.05	5.0	0.15	16.41	0.02	2.464	8.33	2.87	9.2	90.8	0.0	-3.38	0.84	0.81	2.50	3.2	0.004	0.74	0.0	0.04	16.38	0.00	2.567	5.88	3.35	2.3	97.7	0.0	1.17	1.16	0.81	0.79	2.06	2056	270	2	0	1	0	0	logfile
✔	8WC7	37433	2025-06-07	2023-09-11	3.1	3.32	3.10	3.3	0.004	0.60	1.0	0.04	13.83	0.00	2.237	4.93	0.80	4.5	95.5	0.0	-0.58	0.67	0.83	3.30	3.3	0.003	0.56	0.0	0.04	15.57	0.00	2.352	3.31	0.92	4.6	95.4	0.0	0.24	0.92	0.71	0.86	2.93	8532	1122	6	0	1	0	0	logfile
✔	8WBX	37426	2025-06-06	2023-09-10	3.23	3.53	3.24	3.5	0.003	0.66	0.0	0.04	16.96	0.00	2.305	10.08	0.38	1.6	98.4	0.0	1.77	0.48	0.63	1.04	3.5	0.003	0.64	0.0	0.04	16.28	0.00	2.563	10.76	4.28	2.9	97.1	0.0	1.25	0.59	0.49	0.66	1.35	7331	934	3	0	1	0	0	logfile
✔	8U4L	41886	2025-06-17	2023-09-10	3.31	3.91	3.34	3.7	0.014	1.67	2.0	0.09	15.71	0.01	2.364	1.08	0.09	2.0	98.0	0.0	-0.38	0.84	0.83	3.21	3.7	0.003	0.64	0.0	0.04	12.31	0.00	2.409	2.93	0.84	4.2	95.8	0.0	-0.66	1.21	0.80	0.82	3.14	19069	1230	15	0	35	0	9080	logfile
✘	8U4J	41884	2025-06-18	2023-09-10	3.7	4.14	3.76	4.0	0.014	1.67	3.0	0.09	16.95	0.01	2.219	0.90	0.17	2.3	97.7	0.0	-0.45	0.82	0.79	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20432	1297	20	0	58	0	9582	logfile
✔	8U4B	41877	2025-06-20	2023-09-10	3.9	4.27	3.89	4.0	0.003	0.60	0.0	0.04	16.02	0.00	2.146	10.97	0.07	7.0	92.9	0.1	-0.95	0.87	0.82	2.05	4.0	0.003	0.68	0.0	0.05	16.47	0.00	2.484	8.63	2.09	5.5	94.3	0.1	-0.86	0.35	0.88	0.84	1.91	13212	1634	2	0	0	0	0	logfile
✔	8U4i	41883	2025-06-18	2023-09-10	3.38	3.92	3.47	3.8	0.015	1.66	0.0	0.09	16.96	0.01	2.351	0.62	0.35	2.0	98.0	0.0	-0.39	0.80	0.79	3.08	3.8	0.004	0.66	0.0	0.04	12.35	0.00	2.347	3.95	0.95	5.9	94.1	0.0	-1.33	1.22	0.75	0.75	2.50	20434	1301	20	0	57	0	9593	logfile
✔	8U4E	41880	2025-06-15	2023-09-10	4.2	4.74	4.27	3.9	0.003	0.65	0.0	0.05	13.41	0.00	1.274	21.10	0.00	9.6	90.3	0.2	-1.68	0.87	0.83	—	4.0	0.006	0.76	0.0	0.05	13.69	0.00	2.349	18.30	0.00	10.1	89.7	0.2	-1.77	0.39	0.87	0.84	—	13948	1729	5	0	0	0	0	logfile
✔	8QHS	18416	2025-06-05	2023-09-10	2.3	2.47	2.33	2.4	0.014	0.69	0.0	0.05	17.61	0.00	2.089	5.84	6.56	1.3	98.7	0.0	-0.18	0.40	0.89	6.91	2.4	0.003	0.46	0.0	0.04	17.13	0.00	2.429	4.90	0.82	1.7	98.3	0.0	1.31	0.35	0.40	0.90	6.42	6212	785	10	0	0	337	0	logfile
✔	8U4K	41885	2025-06-17	2023-09-10	4.27	4.73	4.31	4.3	0.014	1.77	1.0	0.09	16.02	0.02	2.383	1.03	0.19	3.8	96.2	0.0	-0.65	0.87	0.72	—	4.4	0.002	0.65	0.0	0.04	11.51	0.00	2.313	4.22	0.19	3.9	96.1	0.0	-0.96	3.65	0.87	0.73	—	19063	1228	15	0	35	0	9074	logfile
✘	8U4C	41878	2025-06-15	2023-09-10	3.6	4.15	3.68	3.7	0.005	0.61	0.0	0.04	17.06	0.00	2.162	13.82	0.00	6.8	93.0	0.2	-1.32	0.87	0.82	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14706	1826	6	0	0	0	0	logfile
✔	8WBC	37420	2025-06-09	2023-09-09	3.03	3.32	3.19	3.3	0.003	0.52	0.0	0.04	12.97	0.00	2.129	5.70	0.26	5.0	94.9	0.1	-1.39	0.64	0.85	3.17	3.3	0.004	0.56	0.0	0.04	15.67	0.00	2.551	4.73	1.48	5.0	95.0	0.0	-1.13	0.92	0.63	0.86	2.76	10549	1339	4	0	0	0	0	logfile
✔	8WBB	37419	2025-06-05	2023-09-09	2.9	3.16	2.98	3.2	0.004	0.62	0.0	0.04	19.18	0.00	2.213	8.88	0.51	5.6	94.3	0.1	-1.79	0.66	0.87	2.29	3.2	0.005	0.67	0.0	0.05	19.43	0.00	2.476	3.83	3.54	6.2	93.8	0.0	-1.47	0.35	0.67	0.89	2.48	5449	689	2	0	0	0	0	logfile
✔	8WBE	37422	2025-06-14	2023-09-09	3.0	3.25	3.12	3.3	0.002	0.54	0.0	0.04	13.42	0.00	2.196	5.31	0.23	5.0	94.9	0.0	-1.78	0.61	0.84	3.17	3.3	0.003	0.57	0.0	0.04	16.70	0.00	2.472	4.05	2.34	4.9	95.0	0.0	-1.08	0.50	0.61	0.85	2.60	16094	2040	6	0	0	0	0	logfile
✔	8WBD	37421	2025-06-14	2023-09-09	2.9	3.17	3.02	3.2	0.003	0.57	0.0	0.04	13.55	0.00	2.195	5.10	0.23	5.4	94.6	0.0	-1.64	0.63	0.85	3.35	3.2	0.003	0.59	0.0	0.04	16.74	0.00	2.357	4.09	1.66	5.1	94.9	0.0	-1.28	0.41	0.62	0.86	3.14	16157	2040	7	0	1	0	0	logfile
✔	8WBH	37425	2025-06-09	2023-09-09	3.2	3.43	3.23	3.4	0.003	0.54	0.0	0.04	11.71	0.00	2.203	6.68	0.00	6.0	93.8	0.2	-1.76	0.73	0.83	2.55	3.4	0.006	0.73	0.0	0.05	15.85	0.00	2.477	6.28	4.14	8.5	91.3	0.2	-1.86	1.11	0.76	0.86	2.37	10284	1293	4	0	0	0	0	logfile
✔	8WBG	37424	2025-06-09	2023-09-09	3.2	3.51	3.33	3.6	0.003	0.59	0.0	0.04	13.02	0.00	2.197	6.61	0.17	5.0	94.9	0.1	-1.10	0.64	0.77	3.06	3.6	0.003	0.65	0.0	0.04	15.81	0.00	2.516	5.63	1.60	4.6	95.2	0.1	-1.21	0.99	0.61	0.76	2.52	10854	1357	4	0	0	0	0	logfile
✔	8WBA	37418	2025-06-07	2023-09-09	3.1	3.27	3.07	3.3	0.002	0.54	0.0	0.04	16.65	0.00	2.289	9.38	0.32	1.6	98.4	0.0	1.56	0.62	0.79	2.30	3.3	0.003	0.58	0.0	0.04	16.91	0.00	2.561	9.27	3.85	2.0	98.0	0.0	1.75	0.28	0.61	0.80	2.33	8646	1106	3	0	2	0	0	logfile
✔	8U3Y	41867	2025-06-12	2023-09-08	3.1	3.43	3.22	3.4	0.006	0.72	0.0	0.04	18.58	0.00	1.963	6.85	0.25	3.5	96.5	0.0	-0.24	0.79	0.87	4.03	3.4	0.003	0.54	0.0	0.04	18.77	0.00	1.970	6.06	0.33	3.4	96.6	0.0	0.82	0.34	0.76	0.87	3.13	14012	1336	10	144	5	5	0	logfile
✔	8QHP	18415	2025-06-05	2023-09-08	2.8	3.49	2.81	3.3	0.002	0.38	0.0	0.04	11.64	0.00	2.176	6.09	0.00	1.0	99.0	0.0	1.77	0.76	0.86	4.14	3.3	0.011	0.49	0.0	0.04	14.82	0.00	2.356	5.35	1.12	1.2	98.8	0.0	2.49	0.85	0.74	0.85	3.49	6788	820	4	0	2	0	0	logfile

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