Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QHP	18415	2025-06-05	2023-09-08	2.8	3.49	2.81	3.3	0.002	0.38	0.0	0.04	11.64	0.00	2.176	6.09	0.00	1.0	99.0	0.0	1.77	0.76	0.86	4.14	3.3	0.011	0.49	0.0	0.04	14.82	0.00	2.356	5.35	1.12	1.2	98.8	0.0	2.49	0.85	0.74	0.85	3.49	6788	820	4	0	2	0	0	logfile
✔	8U3L	41866	2025-06-30	2023-09-07	3.7	3.89	3.69	3.8	0.005	0.65	0.0	0.04	15.86	0.00	2.368	5.38	0.00	6.4	93.6	0.0	1.34	0.70	0.83	1.13	3.8	0.005	0.55	0.0	0.04	16.74	0.00	2.416	4.39	1.11	6.6	93.4	0.0	1.09	0.38	0.70	0.84	1.13	34953	2132	12	0	5	4	17492	logfile
✔	8U3D	41858	2025-06-04	2023-09-07	2.83	3.27	2.76	3.2	0.009	0.78	0.0	0.05	12.53	0.01	2.284	5.37	0.00	5.0	95.0	0.0	-2.36	0.56	0.87	3.83	3.2	0.003	0.59	0.0	0.04	14.58	0.01	2.605	4.92	1.99	3.8	96.2	0.0	1.66	0.91	0.54	0.87	3.17	3338	427	1	0	0	0	0	logfile
✔	8U3E	41859	2025-06-04	2023-09-07	3.19	3.64	3.08	3.6	0.009	0.69	0.0	0.05	13.04	0.00	2.280	5.97	0.00	6.4	93.6	0.0	-3.53	0.54	0.83	4.61	3.6	0.003	0.59	0.0	0.04	14.66	0.01	2.614	4.18	1.42	3.5	96.5	0.0	1.20	0.38	0.51	0.85	3.12	3338	427	1	0	0	0	0	logfile
✔	8U3K	41865	2025-06-21	2023-09-07	2.5	2.95	2.58	1.9	0.008	0.83	0.0	0.05	17.43	0.00	2.016	5.18	1.60	3.1	96.7	0.1	0.09	0.89	0.86	3.63	2.1	0.003	0.57	0.0	0.04	17.88	0.00	2.034	5.60	1.60	2.7	97.2	0.1	1.64	0.40	0.90	0.88	3.18	24990	2952	7	55	1	0	0	logfile
✔	8U3G	41861	2025-06-04	2023-09-07	3.42	3.86	3.12	3.8	0.006	0.73	0.0	0.04	13.98	0.00	2.209	8.90	0.00	6.9	93.1	0.0	-3.18	0.48	0.82	2.51	3.8	0.003	0.63	0.0	0.04	15.65	0.00	2.429	8.76	3.67	5.7	94.3	0.0	0.46	1.23	0.40	0.77	2.36	3359	429	2	0	1	0	0	logfile
✘	8QHC	18407	2025-06-13	2023-09-07	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14829	1764	5	61	2	0	0	logfile
✔	8U3F	41860	2025-06-04	2023-09-07	3.31	3.63	3.18	3.6	0.005	0.62	0.0	0.04	12.99	0.01	2.265	6.58	0.00	2.1	97.9	0.0	-1.54	0.57	0.87	2.88	3.6	0.004	0.59	0.0	0.04	14.74	0.00	2.646	6.14	1.94	2.6	97.4	0.0	2.00	0.36	0.55	0.87	2.07	3410	437	1	0	0	0	0	logfile
✔	8U3B	41856	2025-06-28	2023-09-07	3.23	3.78	3.31	3.6	0.012	0.97	0.0	0.05	16.99	0.01	1.992	10.95	0.00	5.3	94.5	0.1	-0.98	0.86	0.89	2.37	3.6	0.003	0.61	0.0	0.04	17.95	0.00	2.019	5.82	0.97	4.4	95.6	0.0	0.51	1.32	0.85	0.89	1.77	33286	3858	12	140	4	0	0	logfile
✔	8WAM	37397	2025-06-07	2023-09-07	3.23	3.48	3.24	3.5	0.002	0.45	0.0	0.04	17.90	0.00	2.211	5.64	0.11	1.7	98.3	0.0	1.70	0.60	0.77	1.11	3.5	0.003	0.53	0.0	0.04	17.74	0.00	2.007	5.25	2.46	2.6	97.4	0.0	1.23	0.39	0.58	0.77	1.24	8650	1102	4	0	4	0	0	logfile
✔	8WA5	37391	2025-06-16	2023-09-07	2.51	2.71	2.50	2.7	0.004	1.10	0.0	0.04	16.21	0.01	1.926	4.94	0.85	2.3	97.7	0.0	1.17	0.66	0.84	3.96	2.7	0.003	0.81	0.0	0.04	16.59	0.00	1.936	4.79	2.54	2.6	97.4	0.0	1.35	1.22	0.69	0.88	3.95	9929	1249	5	0	12	6	0	logfile
✔	8W9Y	37385	2025-06-11	2023-09-06	3.5	3.75	3.52	3.8	0.004	0.76	1.0	0.04	15.90	0.01	2.097	9.48	0.48	10.7	89.3	0.0	-0.43	0.58	0.75	1.32	3.7	0.003	0.63	0.0	0.04	16.77	0.00	2.468	5.97	3.80	10.0	90.0	0.0	0.29	0.59	0.59	0.77	1.24	13152	1584	6	0	0	0	0	logfile
✔	8WA3	37390	2025-06-06	2023-09-06	2.86	3.76	2.88	3.5	0.003	0.65	0.0	0.04	14.06	0.00	2.090	9.53	1.03	5.1	94.9	0.0	0.71	0.65	0.80	1.97	3.5	0.008	1.01	0.0	0.05	16.68	0.01	2.247	11.01	2.28	5.3	94.7	0.0	0.56	1.62	0.63	0.78	1.97	8163	1031	5	0	0	0	0	logfile
✔	8W9X	37384	2025-06-28	2023-09-06	4.4	3.86	3.65	3.7	0.006	0.66	0.0	0.04	13.72	0.00	2.137	10.85	0.00	4.8	95.2	0.0	-0.18	0.78	0.74	—	3.7	0.003	0.59	0.0	0.04	13.78	0.00	2.391	6.20	0.00	3.4	96.6	0.0	0.29	1.09	0.75	0.69	—	32616	4320	12	0	0	0	0	logfile
✔	8QGY	18396	2025-06-26	2023-09-06	3.71	3.99	3.79	3.8	0.003	0.62	1.0	0.06	11.94	0.00	2.061	4.68	3.91	6.2	93.8	0.1	0.12	0.75	0.64	0.79	3.8	0.002	0.58	0.0	0.06	14.38	0.00	2.182	8.45	2.78	6.9	93.1	0.1	0.05	0.81	0.77	0.68	0.50	25443	1589	2	0	0	0	12699	logfile
✔	8QH5	18398	2025-06-19	2023-09-06	3.4	2.50	—	3.1	0.005	0.83	0.0	0.05	14.69	0.02	2.035	10.00	0.34	5.1	94.9	0.0	-1.33	0.66	0.64	2.03	2.2	0.004	0.60	0.0	0.04	15.70	0.00	2.340	15.70	1.41	4.3	95.7	0.0	-0.50	0.74	0.72	0.77	2.65	22744	1687	4	0	0	0	9435	logfile
✔	8W9o	37377	2025-06-05	2023-09-05	2.8	2.67	2.80	2.8	0.005	0.54	0.0	0.04	15.90	0.00	2.217	8.65	2.31	4.0	96.0	0.0	0.95	0.59	0.82	3.45	2.8	0.002	0.51	0.0	0.04	16.04	0.00	2.477	7.72	2.19	2.9	97.1	0.0	1.96	0.35	0.58	0.80	2.91	6862	854	4	0	4	0	0	logfile
✔	8W9L	37374	2025-06-28	2023-09-05	3.2	3.53	3.21	3.5	0.002	0.55	0.0	0.04	13.51	0.00	2.232	8.36	0.00	3.9	96.1	0.0	0.48	0.74	0.71	2.89	3.5	0.005	1.07	3.0	0.05	15.53	0.01	2.014	7.90	1.28	4.5	95.3	0.2	0.22	0.56	0.75	0.74	3.16	32616	4320	12	0	0	0	0	logfile
✔	8W9C	37364	2025-06-13	2023-09-05	3.3	3.57	3.35	3.6	0.010	0.88	3.0	0.06	18.16	0.01	1.965	14.24	7.42	6.1	93.6	0.2	-3.11	0.65	0.69	1.91	3.6	0.007	0.76	0.0	0.04	18.41	0.00	2.068	10.02	2.75	5.7	94.3	0.0	0.19	0.67	0.65	0.71	1.63	15278	1868	9	0	9	0	0	logfile
✔	8W9N	37376	2025-06-05	2023-09-05	2.7	2.62	2.70	2.8	0.004	0.59	0.0	0.04	14.68	0.00	2.189	8.29	0.64	3.4	96.4	0.1	1.27	0.63	0.86	3.23	2.8	0.002	0.51	0.0	0.04	15.33	0.00	2.532	6.71	1.41	2.6	97.3	0.1	2.87	0.98	0.62	0.85	2.70	6860	854	4	0	2	0	0	logfile

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