Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W9E	37366	2025-06-23	2023-09-05	3.6	3.10	3.45	3.0	0.013	1.02	17.0	0.06	23.12	0.01	1.013	14.93	3.59	5.8	93.5	0.6	-2.40	0.57	0.56	0.70	2.9	0.012	0.85	0.0	0.05	23.87	0.01	1.647	13.00	1.50	5.7	94.3	0.0	-0.24	1.81	0.57	0.58	1.12	27886	2697	20	294	8	0	0	logfile
✔	8W9o	37377	2025-06-05	2023-09-05	2.8	2.67	2.80	2.8	0.005	0.54	0.0	0.04	15.90	0.00	2.217	8.65	2.31	4.0	96.0	0.0	0.95	0.59	0.82	3.45	2.8	0.002	0.51	0.0	0.04	16.04	0.00	2.477	7.72	2.19	2.9	97.1	0.0	1.96	0.35	0.58	0.80	2.91	6862	854	4	0	4	0	0	logfile
✔	8U2B	41844	2025-06-10	2023-09-05	0.86	3.74	2.85	3.4	0.011	1.83	0.0	0.08	9.63	0.01	2.506	0.50	0.00	2.4	97.6	0.0	0.09	0.80	0.85	5.79	3.4	0.003	0.58	0.0	0.03	13.29	0.00	2.605	10.21	3.14	2.6	97.4	0.0	4.72	1.03	0.83	0.93	3.15	11396	1665	37	0	0	0	0	logfile
✔	8QGT	18390	2025-06-09	2023-09-05	2.8	2.87	2.77	2.8	0.004	0.56	0.0	0.04	16.98	0.00	2.214	7.89	0.88	3.1	96.9	0.0	0.98	0.78	0.83	2.93	2.8	0.003	0.54	0.0	0.04	17.74	0.00	2.357	6.00	2.81	2.8	97.2	0.0	1.25	0.80	0.79	0.88	3.39	10635	1289	2	12	0	0	0	logfile
✔	8W9C	37364	2025-06-13	2023-09-05	3.3	3.57	3.35	3.6	0.010	0.88	3.0	0.06	18.16	0.01	1.965	14.24	7.42	6.1	93.6	0.2	-3.11	0.65	0.69	1.91	3.6	0.007	0.76	0.0	0.04	18.41	0.00	2.068	10.02	2.75	5.7	94.3	0.0	0.19	0.67	0.65	0.71	1.63	15278	1868	9	0	9	0	0	logfile
✔	8W9A	37362	2025-06-09	2023-09-05	2.7	2.81	2.61	2.8	0.008	0.80	0.0	0.05	10.21	0.01	2.156	13.98	0.18	5.4	94.6	0.0	-4.40	0.70	0.83	5.06	2.8	0.003	0.62	0.0	0.04	15.36	0.00	2.526	4.14	1.14	3.1	96.9	0.0	0.30	0.94	0.70	0.87	3.57	10289	1245	3	0	1	2	0	logfile
✔	8U2C	41845	2025-06-13	2023-09-05	2.5	2.75	2.49	2.9	0.012	1.88	5.0	0.10	13.83	0.02	2.543	0.27	1.85	4.1	95.6	0.3	-1.26	0.75	0.80	3.98	2.9	0.003	0.74	0.0	0.04	16.43	0.00	2.391	6.62	3.17	3.4	96.5	0.1	0.60	1.25	0.75	0.83	2.47	15042	1948	10	0	0	0	0	logfile
✔	8W9F	37367	2025-06-23	2023-09-05	4.4	3.67	4.27	3.5	0.013	1.09	24.0	0.06	24.10	0.01	1.158	15.94	7.51	4.6	94.9	0.5	-2.06	0.62	0.41	—	3.4	0.010	0.70	0.0	0.04	22.66	0.00	1.944	12.87	0.04	5.1	94.9	0.0	0.26	2.77	0.75	0.69	—	27868	2696	20	294	7	0	0	logfile
✔	8W9N	37376	2025-06-05	2023-09-05	2.7	2.62	2.70	2.8	0.004	0.59	0.0	0.04	14.68	0.00	2.189	8.29	0.64	3.4	96.4	0.1	1.27	0.63	0.86	3.23	2.8	0.002	0.51	0.0	0.04	15.33	0.00	2.532	6.71	1.41	2.6	97.3	0.1	2.87	0.98	0.62	0.85	2.70	6860	854	4	0	2	0	0	logfile
✔	8W9V	37382	2025-06-05	2023-09-05	2.9	2.87	2.95	3.0	0.003	0.48	0.0	0.04	14.07	0.00	2.231	5.07	0.93	1.8	98.2	0.0	1.62	0.61	0.85	3.43	3.0	0.002	0.47	0.0	0.04	14.52	0.00	2.607	5.37	3.07	1.2	98.8	0.0	2.89	0.23	0.58	0.83	3.15	6574	852	4	0	6	0	0	logfile
✔	8W9T	37381	2025-06-05	2023-09-05	2.6	2.34	2.82	2.7	0.005	0.60	0.0	0.04	12.30	0.00	2.090	8.43	0.00	1.7	98.1	0.2	-1.88	0.54	0.80	3.36	2.7	0.002	0.51	0.0	0.04	14.49	0.00	2.619	6.57	1.07	2.1	97.9	0.0	2.83	1.01	0.53	0.80	3.35	6574	852	6	0	2	4	0	logfile
✔	8QG0	18386	2025-06-05	2023-09-05	3.43	3.78	3.53	3.8	0.004	0.73	2.0	0.05	17.66	0.00	2.198	21.24	0.50	6.4	93.6	0.0	-1.84	0.65	0.68	1.62	3.8	0.003	0.71	0.0	0.05	19.40	0.00	2.460	16.01	2.99	4.1	95.9	0.0	-1.46	0.44	0.63	0.68	1.02	6080	656	4	34	0	0	0	logfile
✔	8W9L	37374	2025-06-28	2023-09-05	3.2	3.53	3.21	3.5	0.002	0.55	0.0	0.04	13.51	0.00	2.232	8.36	0.00	3.9	96.1	0.0	0.48	0.74	0.71	2.89	3.5	0.005	1.07	3.0	0.05	15.53	0.01	2.014	7.90	1.28	4.5	95.3	0.2	0.22	0.56	0.75	0.74	3.16	32616	4320	12	0	0	0	0	logfile
✔	8W8Y	37361	2025-06-06	2023-09-04	2.9	3.20	3.06	3.2	0.005	0.63	0.0	0.04	16.71	0.00	1.922	7.38	1.71	5.1	94.9	0.0	-0.10	0.56	0.85	3.39	3.2	0.003	0.52	0.0	0.04	17.23	0.00	2.404	3.89	3.42	3.6	96.4	0.0	0.93	0.29	0.59	0.86	3.08	7642	977	7	0	1	0	0	logfile
✔	8W8X	37360	2025-06-06	2023-09-04	2.9	3.21	2.95	3.3	0.007	0.76	0.0	0.05	16.89	0.01	2.057	10.21	2.71	4.3	95.7	0.0	-0.32	0.66	0.85	3.60	3.3	0.002	0.51	0.0	0.04	17.55	0.00	2.337	4.44	3.82	2.7	97.3	0.0	0.89	0.39	0.62	0.84	3.06	7608	977	7	0	1	0	0	logfile
✔	8W8W	37359	2025-06-06	2023-09-04	2.9	3.17	2.95	3.2	0.007	0.94	0.0	0.05	16.43	0.00	2.114	9.56	2.08	5.6	94.4	0.0	-0.36	0.65	0.84	3.36	3.2	0.004	0.58	0.0	0.04	17.12	0.00	2.317	3.96	3.30	3.8	96.2	0.0	0.68	0.36	0.63	0.85	3.27	7642	979	7	0	1	0	0	logfile
✘	8QFS	18383	2025-06-12	2023-09-04	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13294	1576	4	61	2	0	0	logfile
✔	8W8S	37358	2025-06-04	2023-09-04	3.3	4.07	2.86	3.9	0.007	0.89	0.0	0.05	16.08	0.01	2.310	8.96	1.64	4.0	96.0	0.0	1.56	0.57	0.81	1.74	3.9	0.003	0.56	0.0	0.04	16.60	0.00	2.488	3.93	0.41	2.9	97.1	0.0	2.66	0.28	0.57	0.81	1.86	2265	281	2	0	2	0	0	logfile
✔	8W8Q	37356	2025-06-06	2023-09-04	2.89	2.84	2.69	2.9	0.005	0.74	0.0	0.05	15.29	0.00	2.216	10.52	1.71	1.6	98.4	0.0	1.04	0.72	0.85	3.59	2.9	0.003	0.59	0.0	0.04	16.40	0.00	2.449	6.40	2.62	2.2	97.8	0.0	1.27	1.10	0.72	0.86	3.59	8168	1044	5	0	0	0	0	logfile
✔	8U1X	41837	2025-06-09	2023-09-04	2.7	3.42	2.79	3.2	0.006	0.82	0.0	0.05	13.61	0.01	1.988	3.48	0.00	3.1	96.9	0.1	-5.72	0.78	0.85	3.50	3.2	0.003	0.63	0.0	0.04	15.24	0.00	2.031	4.93	0.98	2.6	97.4	0.0	0.72	1.15	0.76	0.84	2.55	11040	1375	4	0	2	0	0	logfile

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