Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QEC	18351	2025-06-16	2023-08-31	3.3	3.50	3.31	3.5	0.004	0.64	0.0	0.08	18.85	0.00	2.107	4.26	0.10	4.0	95.9	0.1	0.19	0.64	0.80	2.63	3.5	0.003	0.55	0.0	0.04	15.69	0.00	2.344	4.43	1.21	4.3	95.6	0.1	0.96	1.13	0.60	0.79	2.63	17802	1101	6	0	12	0	8699	logfile
✔	8U1C	41809	2025-06-16	2023-08-31	2.89	3.20	2.96	3.2	0.023	1.85	0.0	0.11	10.04	0.01	2.013	2.24	0.20	4.5	95.1	0.3	0.02	0.74	0.84	4.37	3.2	0.004	0.67	0.0	0.04	16.16	0.00	2.481	9.34	3.67	4.3	95.6	0.2	-1.07	0.75	0.69	0.88	4.59	18380	2348	16	0	8	0	0	logfile
✔	8QEE	18353	2025-06-12	2023-08-31	2.43	2.62	2.45	2.7	0.002	0.46	0.0	0.04	17.85	0.00	2.021	4.01	2.15	1.7	98.3	0.0	2.41	0.61	0.81	4.25	2.7	0.003	0.53	0.0	0.04	16.99	0.00	2.379	3.71	2.15	2.1	97.8	0.1	2.05	0.70	0.62	0.81	3.88	13746	823	3	0	6	130	6889	logfile
✔	8QEB	18350	2025-06-16	2023-08-31	3.3	3.60	3.37	3.6	0.003	0.49	0.0	0.04	17.62	0.00	2.137	5.26	0.41	4.3	95.7	0.0	-0.18	0.56	0.76	2.00	3.6	0.003	0.56	0.0	0.04	16.80	0.00	2.466	5.93	2.13	5.2	94.5	0.3	-0.15	0.36	0.63	0.80	1.97	17671	1098	5	0	9	1	8700	logfile
✘	8U1B	41806	2025-06-05	2023-08-31	3.7	3.94	3.67	3.9	0.003	0.75	1.0	0.05	17.97	0.00	2.178	14.05	0.21	8.1	91.4	0.5	-1.52	0.69	0.74	1.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4584	611	2	0	0	0	0	logfile
✔	8QED	18352	2025-06-16	2023-08-31	3.27	3.56	3.31	3.6	0.004	0.53	0.0	0.04	15.81	0.00	1.902	4.27	0.10	4.7	95.1	0.2	0.44	0.64	0.81	2.28	3.6	0.003	0.54	0.0	0.04	15.82	0.00	2.353	4.33	1.21	5.3	94.6	0.1	0.69	1.87	0.65	0.82	2.08	17743	1101	6	0	11	0	8712	logfile
✔	8U13	41800	2025-06-15	2023-08-30	3.8	4.21	3.59	3.9	0.004	0.64	0.0	0.04	27.10	0.00	2.145	13.20	0.00	2.5	97.5	0.0	0.79	0.88	0.84	1.36	3.9	0.004	0.74	0.0	0.04	27.52	0.00	2.094	12.90	3.30	4.0	96.0	0.0	0.45	0.51	0.88	0.85	1.14	12825	858	12	293	2	0	0	logfile
✔	8W77	37336	2025-06-04	2023-08-30	3.61	4.00	3.49	3.9	0.004	0.71	0.0	0.05	10.06	0.01	2.463	0.72	0.00	0.8	99.2	0.0	2.45	0.51	0.74	3.54	3.9	0.003	0.55	0.0	0.04	11.05	0.00	2.639	2.15	4.44	1.6	98.4	0.0	3.88	0.87	0.57	0.78	2.79	1601	260	1	0	0	0	0	logfile
✔	8U14	41801	2025-06-16	2023-08-30	3.9	4.27	3.87	4.0	0.003	0.67	0.0	0.04	26.36	0.00	2.124	14.66	0.00	3.3	96.7	0.0	0.65	0.88	0.83	1.05	4.0	0.005	0.76	0.0	0.04	27.31	0.00	2.088	15.36	3.38	4.4	95.6	0.0	0.50	0.49	0.88	0.84	1.09	13995	1006	13	293	2	0	0	logfile
✔	8W7J	37339	2025-06-11	2023-08-30	3.98	4.34	4.09	4.2	0.005	1.10	0.0	0.06	15.74	0.01	2.290	5.56	0.21	11.4	88.1	0.6	-3.79	0.77	0.73	0.53	4.2	0.005	0.77	0.0	0.05	17.53	0.00	2.439	13.50	2.34	11.4	88.1	0.4	-2.44	0.53	0.78	0.76	1.10	13437	1627	4	0	16	0	0	logfile
✔	8W7L	37340	2025-06-13	2023-08-30	3.75	4.06	3.94	4.0	0.005	1.15	4.0	0.07	15.25	0.01	2.293	7.50	0.06	13.3	85.9	0.8	-3.90	0.78	0.77	1.82	4.0	0.004	0.79	0.0	0.05	17.53	0.00	2.315	14.34	1.73	13.4	86.0	0.6	-2.20	0.59	0.80	0.80	1.79	14636	1814	6	0	2	0	0	logfile
✔	8W7A	37337	2025-06-11	2023-08-30	3.77	4.13	3.88	4.1	0.007	1.37	1.0	0.07	15.09	0.01	2.261	5.54	0.00	10.7	88.4	1.0	-4.55	0.68	0.66	1.66	4.1	0.003	0.83	0.0	0.05	17.29	0.00	2.378	11.94	2.19	11.7	87.8	0.5	-3.40	1.05	0.71	0.68	1.12	13017	1586	3	0	1	0	0	logfile
✔	8QE5	18343	2025-06-09	2023-08-30	2.6	2.68	2.59	2.6	0.004	0.60	0.0	0.04	17.25	0.01	2.197	7.21	2.85	3.3	96.7	0.0	1.17	0.79	0.87	3.48	2.6	0.004	0.59	0.0	0.04	17.48	0.00	2.536	6.28	3.53	2.9	97.1	0.0	1.42	0.25	0.78	0.88	3.55	10794	1340	1	0	0	0	0	logfile
✔	8W6N	37329	2025-06-06	2023-08-29	3.2	3.38	3.22	3.4	0.004	0.95	0.0	0.05	13.43	0.01	2.310	3.10	0.12	7.1	92.8	0.1	-7.03	0.66	0.84	2.74	3.4	0.003	0.69	0.0	0.04	15.12	0.01	2.336	5.62	2.87	5.7	94.3	0.0	-1.45	0.47	0.66	0.85	2.32	7616	975	4	0	3	0	0	logfile
✔	8W6o	37330	2025-06-06	2023-08-29	2.9	3.07	2.91	3.1	0.005	1.04	0.0	0.05	13.10	0.01	2.246	2.60	0.13	6.6	93.0	0.5	-4.81	0.68	0.82	3.03	3.1	0.003	0.72	0.0	0.04	14.20	0.01	2.231	6.57	1.91	7.1	92.8	0.1	0.03	0.46	0.69	0.83	2.11	7147	907	4	0	6	0	0	logfile
✔	8U0T	41784	2025-06-05	2023-08-29	3.2	3.49	3.24	3.5	0.015	1.43	2.0	0.09	10.78	0.01	2.291	1.69	0.47	2.7	97.1	0.1	-1.05	0.70	0.79	4.40	3.5	0.002	0.64	0.0	0.04	13.63	0.00	2.468	3.23	1.87	1.9	98.1	0.0	1.24	0.60	0.70	0.83	2.89	6761	849	4	0	10	0	0	logfile
✔	8W6J	37325	2025-06-07	2023-08-29	3.4	3.85	3.58	3.8	0.006	1.25	4.0	0.06	14.81	0.01	2.303	6.61	0.46	8.0	91.6	0.4	-2.91	0.69	0.77	1.54	3.8	0.004	0.78	0.0	0.04	16.58	0.00	2.458	11.12	3.82	7.3	92.5	0.3	-0.26	0.52	0.71	0.81	1.59	8553	1127	7	0	2	0	0	logfile
✔	8W6T	37332	2025-06-06	2023-08-29	3.0	3.16	2.98	3.2	0.006	1.03	1.0	0.07	12.77	0.01	2.247	4.01	0.72	6.3	93.6	0.1	-5.55	0.64	0.81	2.57	3.2	0.003	0.68	0.0	0.04	15.18	0.00	2.522	5.36	1.91	5.5	94.5	0.0	-0.54	1.22	0.62	0.81	2.72	7605	975	2	0	0	0	0	logfile
✔	8U0W	41790	2025-06-08	2023-08-29	2.99	3.75	3.16	3.5	0.007	0.76	0.0	0.05	14.85	0.00	2.091	8.29	0.00	3.5	96.3	0.2	-0.58	0.83	0.83	3.50	3.5	0.003	0.60	0.0	0.04	16.93	0.00	2.457	6.12	0.93	2.3	97.5	0.2	1.76	3.72	0.76	0.81	2.61	9086	1099	2	12	0	0	0	logfile
✔	8W6i	37324	2025-06-06	2023-08-29	3.7	4.25	3.87	4.1	0.004	1.10	0.0	0.06	13.87	0.01	2.308	5.93	0.13	5.1	94.6	0.3	-3.33	0.69	0.78	0.81	4.1	0.003	0.75	0.0	0.04	16.05	0.00	2.137	12.13	3.27	5.4	94.5	0.1	-0.54	0.49	0.70	0.80	0.74	7750	1021	6	0	2	0	0	logfile

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