Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W6T	37332	2025-06-06	2023-08-29	3.0	3.16	2.98	3.2	0.006	1.03	1.0	0.07	12.77	0.01	2.247	4.01	0.72	6.3	93.6	0.1	-5.55	0.64	0.81	2.57	3.2	0.003	0.68	0.0	0.04	15.18	0.00	2.522	5.36	1.91	5.5	94.5	0.0	-0.54	1.22	0.62	0.81	2.72	7605	975	2	0	0	0	0	logfile
✔	8QD0	18339	2025-06-04	2023-08-28	2.8	3.36	2.79	3.2	0.003	0.63	0.0	0.04	15.30	0.01	2.337	5.83	0.00	1.0	99.0	0.0	1.25	0.61	0.81	3.08	3.2	0.003	0.66	0.0	0.04	16.47	0.00	2.465	6.87	1.98	1.4	98.6	0.0	2.36	1.72	0.51	0.75	2.87	3290	422	2	0	1	0	0	logfile
✔	8QCP	18331	2025-06-06	2023-08-28	3.21	3.22	3.17	3.3	0.011	1.86	1.0	0.09	11.52	0.01	2.543	0.00	0.00	7.5	92.5	0.0	-2.03	0.31	0.78	5.53	3.3	0.004	0.62	0.0	0.05	16.14	0.00	2.468	1.57	1.27	5.0	95.0	0.0	-2.13	1.00	0.35	0.86	5.47	7002	453	6	0	0	0	3567	logfile
✔	8W6H	37323	2025-06-06	2023-08-28	3.1	3.21	3.03	3.2	0.011	1.23	1.0	0.07	13.79	0.01	2.205	4.85	0.76	9.5	90.3	0.2	-7.00	0.70	0.85	2.74	3.2	0.003	0.73	0.0	0.04	14.41	0.00	2.274	5.18	3.27	5.4	94.6	0.0	-0.25	0.48	0.69	0.86	1.44	7268	923	4	0	6	0	0	logfile
✘	8QCZ	18338	2025-06-04	2023-08-28	3.1	3.56	3.08	3.4	0.004	0.63	0.0	0.04	15.35	0.00	2.259	7.43	0.00	1.9	98.1	0.0	0.21	0.49	0.81	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3316	421	2	0	1	0	0	logfile
✔	8W6C	37320	2025-06-07	2023-08-28	2.7	2.82	2.68	2.8	0.007	1.05	0.0	0.05	14.78	0.01	2.163	5.79	1.13	4.8	95.2	0.0	-3.18	0.68	0.86	2.60	2.8	0.003	0.65	0.0	0.04	16.11	0.01	2.320	4.21	3.29	4.5	95.5	0.0	1.78	0.40	0.69	0.87	1.80	8360	1060	6	0	10	2	0	logfile
✔	8TZV	41770	2025-06-05	2023-08-28	2.8	3.84	3.02	3.4	0.002	1.22	0.0	0.04	7.77	0.00	2.199	6.62	0.47	1.0	99.0	0.0	0.07	0.80	0.73	1.36	3.5	0.003	0.71	0.0	0.05	14.11	0.00	2.564	11.99	2.36	3.1	96.9	0.0	-0.07	3.14	0.82	0.76	1.60	5680	696	4	0	2	0	0	logfile
✔	8QCT	18335	2025-06-04	2023-08-28	2.6	2.36	2.56	2.6	0.003	0.49	0.0	0.04	15.84	0.00	2.202	7.25	0.00	1.9	98.1	0.0	0.55	0.69	0.84	3.34	2.6	0.003	0.54	0.0	0.04	16.17	0.00	2.424	6.80	1.69	2.2	97.8	0.0	2.41	0.37	0.68	0.83	3.16	3259	418	2	0	1	0	0	logfile
✔	8TZZ	41775	2025-06-12	2023-08-28	3.56	3.88	3.65	3.7	0.007	0.86	0.0	0.05	18.89	0.00	1.432	7.04	0.66	4.4	95.6	0.0	-0.59	0.81	0.85	2.60	3.7	0.003	0.52	0.0	0.04	18.76	0.00	1.151	6.55	0.58	2.6	97.4	0.0	0.91	0.45	0.81	0.83	1.90	14012	1336	11	144	5	5	0	logfile
✔	8W6G	37322	2025-06-07	2023-08-28	3.3	3.59	3.22	3.6	0.008	1.06	2.0	0.06	13.36	0.01	2.313	3.18	0.00	7.3	92.7	0.0	-6.99	0.67	0.89	2.46	3.5	0.003	0.70	0.0	0.04	14.54	0.01	2.617	3.72	1.95	5.8	94.2	0.0	0.68	1.60	0.65	0.88	1.52	8314	1054	4	0	6	0	0	logfile
✔	8QCS	18334	2025-06-04	2023-08-28	2.9	3.25	2.96	3.2	0.003	0.57	0.0	0.04	15.23	0.00	2.301	7.00	0.00	2.7	97.3	0.0	0.62	0.56	0.82	3.12	3.2	0.003	0.62	0.0	0.04	16.35	0.00	2.543	7.45	2.27	3.1	96.9	0.0	2.47	1.20	0.52	0.78	2.39	3241	417	1	0	0	0	0	logfile
✔	8QCR	18333	2025-06-04	2023-08-28	2.75	2.70	2.58	2.8	0.011	1.78	0.0	0.08	9.60	0.01	2.505	0.00	0.00	3.0	97.0	0.0	-1.85	0.33	0.79	7.24	2.9	0.003	0.56	0.0	0.05	16.27	0.00	2.503	2.86	1.13	1.0	99.0	0.0	-0.52	1.40	0.40	0.88	7.40	3153	204	3	0	0	0	1608	logfile
✔	8QCX	18336	2025-06-04	2023-08-28	3.1	3.36	3.23	3.4	0.003	0.50	0.0	0.04	13.43	0.01	2.275	4.35	0.00	1.0	99.0	0.0	1.06	0.57	0.81	3.18	3.4	0.003	0.55	0.0	0.04	15.80	0.00	2.641	6.29	1.70	1.2	98.8	0.0	3.06	1.21	0.52	0.78	2.50	3283	422	1	0	0	0	0	logfile
✔	8U02	41776	2025-06-06	2023-08-28	3.28	4.12	3.44	3.9	0.005	0.98	0.0	0.06	10.24	0.02	2.222	8.98	0.61	2.2	97.8	0.0	0.65	0.69	0.78	2.00	3.9	0.003	0.80	0.0	0.04	14.60	0.00	2.481	11.20	1.58	2.6	97.4	0.0	1.18	1.57	0.69	0.85	1.64	7774	1013	5	0	1	0	0	logfile
✔	8TZY	41774	2025-06-12	2023-08-28	3.8	4.10	3.75	4.0	0.003	0.60	0.0	0.05	15.91	0.00	1.931	8.90	0.41	12.0	88.0	0.0	-2.74	0.68	0.67	1.13	4.0	0.003	0.59	0.0	0.04	16.29	0.00	2.265	7.00	3.66	11.7	88.3	0.0	-2.75	0.37	0.68	0.67	1.11	13718	978	5	0	0	0	6598	logfile
✔	8W6D	37321	2025-06-07	2023-08-28	2.5	2.33	2.44	2.3	0.009	1.08	0.0	0.06	13.67	0.01	2.391	1.35	0.23	5.0	94.9	0.2	-2.77	0.67	0.86	3.20	2.3	0.003	0.66	0.0	0.04	15.40	0.01	2.298	4.18	1.26	4.8	95.2	0.0	1.67	1.15	0.68	0.87	2.91	8304	1058	4	0	6	0	0	logfile
✔	8QCY	18337	2025-06-04	2023-08-28	2.9	3.36	3.06	3.3	0.004	0.58	0.0	0.04	11.88	0.00	2.245	5.86	0.00	1.4	98.6	0.0	0.40	0.55	0.78	3.99	3.3	0.004	0.67	0.0	0.04	15.68	0.00	2.582	6.46	2.27	1.9	98.1	0.0	2.12	1.25	0.48	0.74	2.80	3273	421	1	0	0	0	0	logfile
✔	8TZL	41762	2025-06-16	2023-08-27	3.55	3.98	3.46	3.8	0.004	0.51	0.0	0.04	10.72	0.00	1.922	2.28	0.00	2.5	97.5	0.0	3.76	0.71	0.78	1.99	3.8	0.003	0.54	0.0	0.04	13.79	0.00	2.061	5.19	1.45	3.1	96.9	0.0	3.23	0.69	0.71	0.79	2.18	18875	1398	7	0	4	0	9042	logfile
✔	8TZo	41764	2025-06-08	2023-08-27	3.1	3.45	3.14	3.4	0.004	0.71	0.0	0.04	17.02	0.00	2.252	5.32	0.22	3.1	96.9	0.0	0.82	0.62	0.85	2.93	3.4	0.003	0.54	0.0	0.04	15.30	0.00	2.417	4.74	2.05	3.7	96.3	0.0	1.15	0.27	0.61	0.84	2.64	8737	1070	7	0	10	0	0	logfile
✔	8W5M	37297	2025-06-05	2023-08-27	3.1	3.46	3.16	3.4	0.006	0.98	2.0	0.06	8.72	0.01	2.272	6.29	0.16	5.1	94.9	0.0	-3.59	0.48	0.82	3.33	3.4	0.006	0.72	0.0	0.05	13.94	0.00	2.459	6.65	2.92	4.9	95.1	0.0	-1.73	1.99	0.50	0.86	3.04	5645	751	6	0	0	0	0	logfile

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