Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TZK	41761	2025-06-15	2023-08-27	3.55	3.97	3.48	3.8	0.004	0.53	0.0	0.04	11.13	0.00	1.922	2.51	0.00	3.1	96.9	0.0	3.24	0.72	0.79	1.99	3.8	0.003	0.53	0.0	0.04	14.22	0.00	2.086	5.03	1.08	3.5	96.5	0.0	2.94	0.72	0.72	0.79	1.94	17077	1149	7	0	4	0	8468	logfile
✔	8TZL	41762	2025-06-16	2023-08-27	3.55	3.98	3.46	3.8	0.004	0.51	0.0	0.04	10.72	0.00	1.922	2.28	0.00	2.5	97.5	0.0	3.76	0.71	0.78	1.99	3.8	0.003	0.54	0.0	0.04	13.79	0.00	2.061	5.19	1.45	3.1	96.9	0.0	3.23	0.69	0.71	0.79	2.18	18875	1398	7	0	4	0	9042	logfile
✔	8TZo	41764	2025-06-08	2023-08-27	3.1	3.45	3.14	3.4	0.004	0.71	0.0	0.04	17.02	0.00	2.252	5.32	0.22	3.1	96.9	0.0	0.82	0.62	0.85	2.93	3.4	0.003	0.54	0.0	0.04	15.30	0.00	2.417	4.74	2.05	3.7	96.3	0.0	1.15	0.27	0.61	0.84	2.64	8737	1070	7	0	10	0	0	logfile
✔	8W5P	37300	2025-06-04	2023-08-27	3.3	3.74	3.29	3.7	0.006	0.74	0.0	0.05	13.58	0.01	2.196	12.67	0.50	6.9	92.8	0.2	-2.56	0.55	0.81	2.20	3.7	0.004	0.70	0.0	0.04	16.19	0.00	2.514	8.17	4.53	7.6	92.4	0.0	-1.93	0.45	0.52	0.80	1.99	3582	473	4	0	0	0	0	logfile
✔	8W5J	37294	2025-06-06	2023-08-27	4.4	4.87	4.34	4.4	0.002	0.63	0.0	0.04	12.49	0.01	2.174	13.63	0.00	2.1	97.9	0.0	1.07	0.56	0.79	—	4.4	0.004	0.69	0.0	0.04	13.15	0.00	2.368	14.80	0.13	2.9	97.1	0.0	0.66	0.44	0.57	0.81	—	7356	942	11	0	1	0	0	logfile
✔	8W5o	37299	2025-06-05	2023-08-27	3.6	4.29	3.96	4.2	0.016	1.88	17.0	0.11	15.02	0.01	1.189	24.97	11.15	6.7	91.6	1.6	-3.64	0.52	0.81	1.74	4.2	0.004	0.89	0.0	0.05	16.87	0.01	2.278	10.88	4.04	4.9	94.8	0.3	-2.00	0.96	0.49	0.78	0.95	4697	620	5	0	0	0	0	logfile
✔	8TZQ	41766	2025-06-07	2023-08-27	3.2	3.93	3.21	3.7	0.003	0.55	0.0	0.04	9.08	0.01	2.226	6.68	0.43	2.3	97.7	0.0	1.04	0.73	0.82	3.31	3.7	0.003	0.66	0.0	0.04	14.01	0.00	2.526	6.68	2.16	3.0	97.0	0.0	0.84	0.81	0.72	0.84	2.59	8618	1117	6	0	1	0	0	logfile
✔	8W5K	37295	2025-06-06	2023-08-27	3.6	3.84	3.47	3.8	0.004	0.72	0.0	0.04	17.12	0.00	2.076	8.86	0.88	2.5	97.5	0.0	0.90	0.66	0.78	2.64	3.8	0.003	0.68	0.0	0.04	17.60	0.00	2.476	6.95	5.16	2.7	97.3	0.0	1.09	1.15	0.64	0.75	2.29	7379	942	11	0	1	0	0	logfile
✔	8W5M	37297	2025-06-05	2023-08-27	3.1	3.46	3.16	3.4	0.006	0.98	2.0	0.06	8.72	0.01	2.272	6.29	0.16	5.1	94.9	0.0	-3.59	0.48	0.82	3.33	3.4	0.006	0.72	0.0	0.05	13.94	0.00	2.459	6.65	2.92	4.9	95.1	0.0	-1.73	1.99	0.50	0.86	3.04	5645	751	6	0	0	0	0	logfile
✔	8W5V	37305	2025-06-04	2023-08-27	3.4	3.59	3.26	3.5	0.002	0.58	0.0	0.04	13.70	0.00	2.157	5.34	0.25	6.7	93.3	0.0	-1.52	0.52	0.84	2.39	3.5	0.003	0.63	0.0	0.04	16.34	0.00	2.578	4.78	3.78	6.9	93.1	0.0	-1.23	0.43	0.51	0.84	2.30	3584	473	4	0	0	0	0	logfile
✔	8TZP	41765	2025-06-06	2023-08-27	3.23	3.70	3.38	3.6	0.004	0.73	0.0	0.04	15.23	0.01	1.341	5.58	0.27	2.8	97.2	0.0	1.16	0.67	0.84	2.54	3.6	0.003	0.59	0.0	0.04	15.73	0.00	2.513	5.80	3.10	3.9	96.1	0.0	1.15	0.90	0.68	0.85	2.29	6920	859	5	0	2	0	0	logfile
✔	8TZR	41767	2025-06-08	2023-08-27	3.5	4.05	3.66	4.0	0.006	0.85	0.0	0.05	16.98	0.01	2.229	6.61	0.53	4.5	95.5	0.0	-0.18	0.55	0.74	1.80	4.0	0.003	0.66	0.0	0.04	15.91	0.00	2.443	7.24	2.77	3.9	96.1	0.0	0.54	0.94	0.56	0.75	1.46	8821	1079	6	0	9	0	0	logfile
✔	8W5T	37303	2025-06-04	2023-08-27	3.6	4.62	3.94	4.5	0.004	0.85	0.0	0.05	13.15	0.01	2.159	13.18	0.00	11.9	87.3	0.9	-1.65	0.51	0.81	1.47	4.5	0.004	0.97	0.0	0.05	16.60	0.01	2.477	14.43	3.47	10.8	88.1	1.1	-1.50	0.58	0.50	0.78	1.44	3624	476	4	0	0	0	0	logfile
✔	8TZJ	41760	2025-06-12	2023-08-27	3.51	3.99	3.46	3.9	0.004	0.67	0.0	0.04	12.13	0.00	2.229	2.62	0.15	1.8	98.2	0.0	2.16	0.65	0.77	1.68	3.9	0.003	0.57	0.0	0.04	15.28	0.00	1.909	4.79	1.03	2.3	97.7	0.0	2.47	0.90	0.70	0.80	1.25	13346	846	6	0	4	0	6772	logfile
✔	8W5D	37286	2025-06-04	2023-08-26	4.3	4.56	4.21	4.4	0.007	1.17	1.0	0.06	11.77	0.01	1.882	11.45	0.79	18.3	81.5	0.2	-4.56	0.46	0.81	—	4.4	0.005	0.92	0.0	0.05	13.39	0.00	2.290	17.46	0.26	15.8	84.2	0.0	-3.05	1.69	0.46	0.83	—	3431	453	4	0	0	0	0	logfile
✔	8W5F	37290	2025-06-04	2023-08-26	3.3	3.47	3.10	3.4	0.004	0.82	0.0	0.05	13.39	0.01	2.296	9.53	0.25	9.9	88.7	1.5	-3.00	0.54	0.85	3.07	3.4	0.003	0.77	0.0	0.05	15.58	0.01	2.433	6.40	4.20	9.6	89.5	0.8	-1.40	0.42	0.54	0.87	2.63	3700	485	4	0	0	0	0	logfile
✔	8W5E	37287	2025-06-04	2023-08-26	3.8	4.15	3.78	4.1	0.007	1.18	0.0	0.06	11.14	0.01	2.042	5.79	0.54	9.9	89.7	0.5	-4.58	0.48	0.82	2.33	4.1	0.005	0.92	0.0	0.05	15.78	0.00	2.486	12.47	7.53	12.9	87.1	0.0	-3.26	1.64	0.49	0.84	1.80	3396	446	4	0	0	0	0	logfile
✔	8W5i	37293	2025-06-05	2023-08-26	3.6	4.02	3.54	3.9	0.015	1.55	9.0	0.09	10.13	0.01	2.039	11.19	1.91	7.2	92.4	0.5	-4.13	0.45	0.83	2.77	3.9	0.004	0.76	0.0	0.05	15.43	0.00	2.516	5.41	6.28	5.8	94.2	0.0	-1.99	2.10	0.47	0.85	2.32	6664	880	7	0	0	0	0	logfile
✔	8TZ6	41735	2025-06-21	2023-08-26	2.69	2.94	2.79	3.1	0.012	0.91	0.0	0.05	15.81	0.00	2.139	2.33	0.48	1.9	98.1	0.0	2.99	0.56	0.77	3.98	3.1	0.004	0.53	0.0	0.04	16.71	0.00	2.120	2.36	0.71	2.4	97.6	0.0	2.84	2.25	0.51	0.75	3.25	24849	1599	9	0	18	3	12165	logfile
✔	8TZ7	41736	2025-06-21	2023-08-26	3.0	3.25	3.01	3.3	0.010	0.68	0.0	0.04	12.77	0.00	2.171	2.36	0.48	1.5	98.5	0.0	3.50	0.60	0.78	3.19	3.3	0.003	0.52	0.0	0.04	15.10	0.00	2.335	2.73	1.28	2.0	98.0	0.0	2.74	1.31	0.57	0.79	3.26	24408	1599	6	0	6	0	12069	logfile

• ← previous
• Page 188 of 700
• next →