Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K9B	36983	2025-05-26	2023-07-31	4.5	3.89	4.65	3.7	0.002	0.44	0.0	0.04	8.28	0.00	1.993	3.33	0.03	2.2	97.6	0.2	1.00	0.75	0.48	—	3.6	0.011	0.80	0.0	0.05	11.85	0.01	2.366	18.35	0.00	5.7	94.1	0.2	-0.78	1.49	0.80	0.70	—	28440	3643	6	0	1	0	0	logfile
✔	8K8U	36962	2025-05-16	2023-07-31	3.05	3.23	3.08	3.2	0.009	0.68	0.0	0.05	12.04	0.00	1.873	1.34	0.00	2.5	97.3	0.2	0.06	0.65	0.72	2.56	3.2	0.002	0.57	0.0	0.04	15.35	0.00	2.083	6.26	0.92	3.4	96.6	0.1	0.68	1.76	0.71	0.78	2.23	13969	1640	6	27	4	2	0	logfile
✔	8K98	36980	2025-05-15	2023-07-31	2.9	3.17	3.03	3.2	0.003	0.58	0.0	0.04	19.22	0.00	2.179	9.35	3.15	6.0	93.8	0.2	-0.15	0.63	0.75	1.48	3.2	0.004	0.67	0.0	0.04	19.57	0.00	2.396	8.97	3.76	6.9	93.0	0.1	-0.65	0.93	0.64	0.76	1.81	13415	1619	4	0	0	0	0	logfile
✔	8K94	36974	2025-05-26	2023-07-31	3.4	3.71	3.51	3.7	0.006	0.73	0.0	0.04	16.04	0.01	2.148	8.92	0.14	2.8	97.1	0.1	0.94	0.75	0.82	2.30	3.7	0.003	0.56	0.0	0.04	17.07	0.00	2.335	7.27	0.95	2.8	97.2	0.1	1.39	0.89	0.73	0.83	1.96	27890	3595	8	0	3	0	0	logfile
✔	8K8T	36961	2025-05-13	2023-07-31	3.8	2.70	—	3.7	0.014	0.97	0.0	0.05	18.59	0.01	2.197	15.42	2.79	4.4	95.6	0.0	0.47	0.69	0.72	1.42	3.0	0.004	0.78	0.0	0.04	19.38	0.00	2.454	13.50	5.13	5.1	94.9	0.0	0.92	0.56	0.70	0.72	1.30	9926	1210	4	0	0	0	0	logfile
✔	8K8Z	36969	2025-05-30	2023-07-31	2.83	3.57	2.91	3.3	0.007	0.75	0.0	0.05	14.53	0.00	2.160	10.44	0.29	2.8	97.2	0.0	1.30	0.88	0.89	3.11	3.3	0.003	0.58	0.0	0.04	15.99	0.00	2.444	7.25	1.00	2.1	97.9	0.0	1.95	0.39	0.88	0.90	2.57	33486	4314	12	0	6	0	0	logfile
✔	8K8X	36967	2025-05-26	2023-07-31	3.53	3.77	3.57	3.7	0.004	0.63	0.0	0.04	16.37	0.00	2.085	9.32	0.00	2.3	97.5	0.2	0.94	0.71	0.75	2.14	3.7	0.004	0.61	0.0	0.04	17.69	0.00	2.547	9.37	1.44	2.6	97.3	0.1	0.77	1.35	0.75	0.77	1.94	27880	3595	5	0	0	0	0	logfile
✔	8K8W	36966	2025-05-30	2023-07-31	3.46	3.86	3.67	3.8	0.002	0.57	0.0	0.04	16.46	0.00	2.154	7.90	0.03	2.6	97.3	0.1	1.10	0.73	0.76	1.71	3.8	0.003	0.59	0.0	0.04	17.70	0.00	2.459	8.58	1.76	2.9	97.1	0.0	0.97	1.06	0.76	0.82	1.61	33456	4314	6	0	0	0	0	logfile
✔	8K92	36972	2025-05-30	2023-07-31	3.31	3.61	3.44	3.5	0.006	0.70	0.0	0.04	15.17	0.00	2.122	9.13	0.38	3.4	96.5	0.1	1.39	0.78	0.84	2.77	3.5	0.004	0.56	0.0	0.04	16.51	0.00	2.491	8.00	1.59	3.1	96.8	0.1	1.54	0.37	0.79	0.88	2.17	33480	4314	12	0	6	0	0	logfile
✔	8K90	36970	2025-05-26	2023-07-31	3.43	3.76	3.75	3.7	0.005	0.74	0.0	0.04	15.93	0.00	2.078	12.50	0.14	2.7	97.3	0.0	1.15	0.67	0.69	1.36	3.7	0.003	0.62	0.0	0.04	17.43	0.00	2.491	11.77	2.29	2.3	97.7	0.0	1.01	0.68	0.76	0.79	1.33	27895	3595	8	0	3	0	0	logfile
✔	8K93	36973	2025-05-30	2023-07-31	3.23	3.55	3.40	3.5	0.006	0.73	0.0	0.04	16.13	0.01	2.070	8.27	0.09	3.3	96.6	0.1	1.27	0.75	0.82	2.39	3.5	0.004	0.58	0.0	0.04	17.31	0.00	2.515	6.64	1.21	2.7	97.2	0.1	1.47	2.48	0.79	0.85	1.98	33470	4314	10	0	4	0	0	logfile
✔	8K8J	36951	2025-05-11	2023-07-30	2.88	3.12	—	3.1	0.004	0.58	0.0	0.04	15.12	0.00	2.190	9.34	0.11	5.3	94.7	0.0	0.30	0.66	0.84	3.80	3.1	0.003	0.58	0.0	0.04	17.03	0.00	2.586	7.68	2.48	4.3	95.7	0.0	0.60	0.37	0.65	0.84	3.40	8155	1031	6	0	1	0	0	logfile
✔	8Q16	18061	2025-05-14	2023-07-30	3.6	3.90	3.68	3.8	0.004	0.54	0.0	0.03	26.75	0.00	2.181	6.94	0.50	2.9	97.1	0.0	2.53	0.80	0.84	1.89	3.8	0.005	0.59	0.0	0.03	27.54	0.00	2.190	6.71	2.17	3.2	96.8	0.0	2.88	1.52	0.81	0.85	1.40	11773	732	10	294	0	0	0	logfile
✔	8TMB	41383	2025-05-18	2023-07-29	3.6	3.32	3.76	3.6	0.004	0.71	0.0	0.04	14.70	0.01	2.100	13.55	0.05	5.4	94.2	0.4	-0.35	0.56	0.72	1.69	3.5	0.005	0.74	0.0	0.05	17.11	0.01	2.097	12.27	4.22	7.1	92.6	0.3	0.03	1.15	0.55	0.74	1.82	16229	1961	10	0	6	0	0	logfile
✔	8TMi	41390	2025-05-19	2023-07-29	3.3	3.31	3.38	3.3	0.004	0.61	0.0	0.04	14.92	0.00	2.142	11.01	0.00	3.3	96.7	0.0	1.20	0.60	0.77	2.43	3.3	0.003	0.62	0.0	0.04	16.74	0.00	2.405	9.80	2.16	3.1	96.8	0.0	1.09	0.35	0.60	0.79	2.16	17724	2161	12	0	4	0	0	logfile
✔	8K88	36947	2025-05-10	2023-07-29	2.6	2.26	2.70	2.1	0.002	0.58	0.0	0.04	20.29	0.00	1.973	7.12	0.96	2.4	97.6	0.0	1.49	0.83	0.85	3.70	2.1	0.003	0.56	0.0	0.04	20.13	0.00	1.975	6.81	1.93	2.8	97.2	0.0	1.38	0.35	0.83	0.85	3.58	6686	726	5	44	1	0	0	logfile
✔	8TMD	41385	2025-05-18	2023-07-29	3.0	2.91	3.14	2.9	0.004	0.60	0.0	0.04	13.97	0.00	2.078	10.67	0.06	4.2	95.8	0.0	1.43	0.63	0.75	2.53	2.9	0.003	0.62	0.0	0.04	17.61	0.00	2.429	10.30	3.05	3.2	96.8	0.0	1.31	1.14	0.63	0.79	2.09	16011	1938	10	0	3	0	0	logfile
✔	8K87	36946	2025-05-15	2023-07-29	2.9	3.06	2.96	3.0	0.004	0.77	0.0	0.04	20.69	0.01	1.929	14.82	2.09	3.6	96.4	0.0	0.41	0.84	0.81	1.67	3.0	0.004	0.73	0.0	0.04	20.39	0.00	1.952	10.41	3.30	3.6	96.4	0.0	0.60	0.41	0.84	0.80	1.83	13372	1452	10	88	2	0	0	logfile
✔	8TMC	41384	2025-05-21	2023-07-29	3.3	3.33	3.42	3.3	0.004	0.63	0.0	0.04	14.42	0.01	2.070	12.29	0.15	4.7	95.1	0.2	0.38	0.57	0.75	2.46	3.3	0.005	0.90	2.0	0.05	16.55	0.01	2.270	10.97	2.67	4.4	95.5	0.1	0.84	0.33	0.58	0.77	2.04	18052	2198	13	0	6	0	0	logfile
✔	8TMJ	41391	2025-05-19	2023-07-29	3.2	3.29	3.34	3.2	0.003	0.59	0.0	0.04	15.08	0.00	2.174	9.70	0.00	3.3	96.6	0.1	1.53	0.62	0.80	2.37	3.2	0.004	0.61	0.0	0.04	16.94	0.00	2.540	8.80	1.86	3.4	96.6	0.1	1.76	0.37	0.61	0.81	2.02	17758	2165	11	0	3	0	0	logfile

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