Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TME	41386	2025-05-17	2023-07-29	3.1	2.20	3.25	3.0	0.004	0.65	0.0	0.05	15.25	0.00	2.169	11.73	0.00	4.7	95.2	0.1	0.91	0.77	0.74	2.24	3.0	0.004	0.65	0.0	0.04	17.11	0.00	2.431	10.81	2.70	4.5	95.4	0.1	0.94	0.35	0.78	0.78	1.84	16124	1952	9	0	3	0	0	logfile
✔	8K8E	36948	2025-05-14	2023-07-29	2.6	3.29	2.57	3.0	0.005	0.69	0.0	0.05	16.42	0.00	2.218	8.92	1.33	5.7	94.3	0.0	0.45	0.69	0.87	2.88	3.0	0.004	0.65	0.0	0.04	15.18	0.00	2.482	5.81	1.95	5.0	95.0	0.0	1.11	0.42	0.69	0.88	2.95	10716	1324	11	0	17	0	0	logfile
✔	8TMK	41392	2025-05-19	2023-07-29	3.4	3.08	3.44	3.2	0.005	0.66	0.0	0.04	14.87	0.01	2.128	11.78	0.05	4.9	95.0	0.0	0.69	0.60	0.75	2.55	3.2	0.005	0.65	0.0	0.04	16.77	0.00	2.307	10.60	3.06	5.4	94.6	0.0	0.92	0.33	0.62	0.79	2.37	17757	2166	12	0	3	0	0	logfile
✔	8TMH	41389	2025-05-19	2023-07-29	3.1	3.15	3.19	3.1	0.003	0.54	0.0	0.04	14.69	0.00	2.129	8.29	0.10	3.7	96.2	0.0	1.93	0.64	0.78	2.49	3.1	0.003	0.59	0.0	0.04	16.81	0.00	2.469	7.76	3.26	3.9	96.1	0.0	1.72	0.33	0.64	0.83	2.46	17756	2166	11	0	2	0	0	logfile
✔	8TMN	41395	2025-05-18	2023-07-29	3.3	2.35	3.44	3.2	0.003	0.63	0.0	0.04	14.95	0.01	2.081	13.64	0.06	3.9	96.0	0.1	0.01	0.77	0.76	2.10	3.2	0.005	0.71	0.0	0.05	17.31	0.01	2.483	12.96	3.60	3.4	96.5	0.1	0.63	0.45	0.79	0.80	1.66	16059	1944	10	0	3	0	0	logfile
✔	8K88	36947	2025-05-10	2023-07-29	2.6	2.26	2.70	2.1	0.002	0.58	0.0	0.04	20.29	0.00	1.973	7.12	0.96	2.4	97.6	0.0	1.49	0.83	0.85	3.70	2.1	0.003	0.56	0.0	0.04	20.13	0.00	1.975	6.81	1.93	2.8	97.2	0.0	1.38	0.35	0.83	0.85	3.58	6686	726	5	44	1	0	0	logfile
✔	8TMo	41396	2025-05-18	2023-07-29	3.1	2.33	3.28	3.2	0.003	0.63	0.0	0.04	15.05	0.00	2.133	11.59	0.06	4.8	95.1	0.1	0.70	0.76	0.75	1.98	3.2	0.004	0.69	0.0	0.05	17.03	0.00	2.426	10.94	3.82	4.7	95.2	0.1	0.99	0.40	0.78	0.77	1.97	16059	1944	9	0	3	0	0	logfile
✔	8TML	41393	2025-05-19	2023-07-29	3.4	3.11	3.52	3.2	0.004	0.67	0.0	0.04	14.47	0.01	2.178	10.40	0.05	4.6	95.4	0.0	0.33	0.60	0.75	2.44	3.2	0.004	0.62	0.0	0.04	16.41	0.00	2.548	9.36	3.06	4.4	95.6	0.0	0.74	1.12	0.60	0.78	2.19	17759	2165	11	0	4	0	0	logfile
✔	8TMM	41394	2025-05-19	2023-07-29	3.4	3.28	3.49	3.4	0.003	0.61	0.0	0.04	14.96	0.00	2.065	12.25	0.00	4.0	96.0	0.0	0.61	0.56	0.73	1.97	3.4	0.003	0.62	0.0	0.04	17.04	0.00	2.140	10.47	2.49	4.2	95.8	0.0	0.94	0.33	0.57	0.77	1.70	17878	2181	13	0	4	0	0	logfile
✔	8TMB	41383	2025-05-18	2023-07-29	3.6	3.32	3.76	3.6	0.004	0.71	0.0	0.04	14.70	0.01	2.100	13.55	0.05	5.4	94.2	0.4	-0.35	0.56	0.72	1.69	3.5	0.005	0.74	0.0	0.05	17.11	0.01	2.097	12.27	4.22	7.1	92.6	0.3	0.03	1.15	0.55	0.74	1.82	16229	1961	10	0	6	0	0	logfile
✔	8TMA	41382	2025-05-09	2023-07-29	3.2	3.37	2.98	3.3	0.004	0.68	0.0	0.05	12.06	0.01	2.324	3.32	0.00	4.0	95.8	0.2	-1.56	0.79	0.82	3.66	3.3	0.003	0.64	0.0	0.04	14.94	0.00	2.531	3.63	2.54	4.2	95.8	0.0	-0.57	1.72	0.80	0.84	3.75	3254	410	3	0	0	0	0	logfile
✔	8TMG	41388	2025-05-19	2023-07-29	3.0	3.08	3.17	3.1	0.004	0.63	0.0	0.04	14.00	0.00	2.108	10.21	0.00	3.9	96.0	0.0	1.28	0.63	0.80	2.32	3.0	0.004	0.65	0.0	0.04	17.57	0.00	2.455	9.73	3.51	4.0	96.0	0.0	1.46	0.44	0.62	0.82	2.04	17747	2164	11	0	2	0	0	logfile
✔	8TMJ	41391	2025-05-19	2023-07-29	3.2	3.29	3.34	3.2	0.003	0.59	0.0	0.04	15.08	0.00	2.174	9.70	0.00	3.3	96.6	0.1	1.53	0.62	0.80	2.37	3.2	0.004	0.61	0.0	0.04	16.94	0.00	2.540	8.80	1.86	3.4	96.6	0.1	1.76	0.37	0.61	0.81	2.02	17758	2165	11	0	3	0	0	logfile
✔	8TM4	41378	2025-05-21	2023-07-28	3.0	3.65	3.61	3.5	0.013	1.89	0.0	0.09	15.39	0.00	2.497	2.24	3.99	9.3	89.1	1.6	-5.03	0.79	0.77	2.01	3.4	0.004	0.80	0.0	0.04	16.71	0.00	2.149	10.08	2.92	3.6	96.4	0.0	0.23	1.75	0.82	0.84	2.28	21367	2794	13	0	0	0	0	logfile
✔	8TM3	41377	2025-05-18	2023-07-28	3.0	3.70	3.60	3.5	0.003	0.56	0.0	0.04	14.99	0.00	1.960	7.60	0.23	4.4	95.5	0.1	-0.07	0.81	0.79	1.52	3.5	0.004	0.76	0.0	0.04	16.05	0.00	2.308	12.32	2.90	4.4	95.5	0.0	0.01	1.58	0.81	0.81	1.64	17562	2381	11	0	0	0	0	logfile
✔	8TM5	41379	2025-05-21	2023-07-28	3.0	3.63	3.43	3.5	0.003	0.61	0.0	0.04	15.37	0.00	2.026	7.11	0.09	3.1	96.9	0.1	-0.40	0.80	0.81	2.42	3.4	0.003	0.68	0.0	0.04	16.52	0.00	2.404	8.97	1.92	2.7	97.2	0.1	0.80	0.56	0.80	0.85	2.65	21689	2860	13	0	0	0	0	logfile
✔	8Q0N	18056	2025-05-17	2023-07-28	4.2	4.02	3.97	4.1	0.003	0.48	0.0	0.04	13.78	0.00	2.181	5.46	0.00	1.7	98.3	0.0	1.28	0.56	0.43	—	3.9	0.003	0.57	0.0	0.04	14.27	0.00	2.418	6.72	0.00	3.5	96.5	0.0	0.77	1.03	0.68	0.64	—	15917	1009	4	0	2	0	7910	logfile
✔	8Q0G	18053	2025-05-17	2023-07-28	4.3	3.53	4.57	3.4	0.005	0.71	0.0	0.05	13.48	0.00	2.149	15.70	0.13	8.5	91.4	0.0	-1.32	0.69	0.76	—	3.4	0.003	0.70	0.0	0.04	13.70	0.00	2.350	11.34	0.00	6.3	93.7	0.0	-1.05	0.45	0.68	0.75	—	15819	2168	7	0	0	0	0	logfile
✔	8K7R	36939	2025-05-10	2023-07-27	3.56	3.77	3.54	3.8	0.006	0.79	0.0	0.05	20.11	0.01	2.173	8.58	0.43	7.9	91.8	0.3	0.22	0.67	0.77	1.70	3.8	0.006	0.78	0.0	0.05	17.29	0.00	2.495	7.55	1.86	10.0	89.8	0.3	-0.29	0.38	0.70	0.81	2.03	6472	782	9	0	21	0	0	logfile
✔	8TM1	41374	2025-05-10	2023-07-27	2.79	2.95	2.76	3.0	0.003	0.68	0.0	0.05	12.21	0.01	2.313	2.95	0.00	3.4	96.6	0.0	-1.40	0.76	0.81	4.05	2.9	0.004	0.68	0.0	0.05	16.72	0.00	2.508	2.72	1.83	3.8	96.2	0.0	-0.49	1.18	0.79	0.86	3.91	4536	569	4	0	0	0	0	logfile

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