Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TLM	41370	2025-05-10	2023-07-27	2.9	3.41	2.90	3.3	0.003	0.50	0.0	0.04	11.71	0.00	2.057	4.62	0.00	2.8	97.2	0.0	1.36	0.71	0.81	3.76	3.3	0.003	0.59	0.0	0.04	14.98	0.00	2.460	4.81	1.97	2.9	97.1	0.0	1.31	0.46	0.68	0.80	3.01	5400	696	3	0	0	0	0	logfile
✔	8TLT	41372	2025-05-19	2023-07-27	2.85	3.16	2.97	3.1	0.005	0.72	0.0	0.74	17.33	0.00	2.216	4.11	0.54	4.6	95.4	0.0	0.75	0.70	0.81	3.25	3.1	0.007	1.42	0.0	0.24	17.53	0.00	2.197	4.05	2.29	4.8	95.2	0.0	0.44	1.10	0.70	0.83	3.37	18644	2387	16	26	3	437	0	logfile
✔	8PZV	18046	2025-05-24	2023-07-27	2.9	2.44	2.90	2.8	0.006	0.61	1.0	0.05	13.95	0.00	1.906	11.81	0.00	6.8	93.1	0.1	-1.27	0.69	0.77	4.03	2.8	0.003	0.55	0.0	0.04	15.91	0.00	1.964	6.88	1.19	6.8	93.1	0.1	-0.99	0.44	0.66	0.77	3.76	26040	1697	8	0	1	2	12738	logfile
✔	8PZU	18045	2025-05-15	2023-07-27	3.5	3.33	3.48	3.3	0.005	0.64	0.0	0.05	13.74	0.00	2.007	13.31	0.00	4.5	95.3	0.1	-0.37	0.77	0.79	2.64	3.3	0.003	0.60	0.0	0.04	15.60	0.00	2.022	10.77	1.49	4.8	95.1	0.1	-0.34	0.99	0.78	0.80	1.89	13782	1766	8	0	1	0	0	logfile
✔	8K7S	36940	2025-05-10	2023-07-27	3.51	3.68	3.44	3.7	0.002	0.54	0.0	0.04	8.56	0.00	2.263	8.04	0.95	7.4	92.2	0.4	0.24	0.65	0.67	0.85	3.7	0.003	0.75	0.0	0.05	14.40	0.01	2.480	10.03	3.79	8.6	90.8	0.6	-0.51	0.84	0.70	0.74	1.22	6645	800	9	0	18	0	0	logfile
✔	8K7R	36939	2025-05-10	2023-07-27	3.56	3.77	3.54	3.8	0.006	0.79	0.0	0.05	20.11	0.01	2.173	8.58	0.43	7.9	91.8	0.3	0.22	0.67	0.77	1.70	3.8	0.006	0.78	0.0	0.05	17.29	0.00	2.495	7.55	1.86	10.0	89.8	0.3	-0.29	0.38	0.70	0.81	2.03	6472	782	9	0	21	0	0	logfile
✔	8K7T	36941	2025-05-12	2023-07-27	3.71	3.98	3.77	4.0	0.005	0.89	5.0	0.05	18.71	0.00	2.026	12.17	0.61	6.2	93.5	0.4	0.17	0.66	0.73	1.27	4.0	0.004	0.87	0.0	0.05	17.09	0.00	2.529	12.06	2.74	7.1	92.6	0.3	-0.33	0.84	0.69	0.78	1.74	8948	1084	13	0	23	0	0	logfile
✔	8TLQ	41371	2025-05-19	2023-07-27	3.53	3.90	3.69	3.8	0.004	0.68	0.0	0.72	17.38	0.00	2.253	3.95	0.13	4.0	96.0	0.0	1.03	0.79	0.81	1.92	3.8	0.007	1.43	0.0	0.23	17.83	0.00	2.164	5.70	3.35	6.3	93.7	0.0	0.24	1.11	0.82	0.85	2.29	19219	2520	14	26	3	43	0	logfile
✔	8TLU	41373	2025-05-13	2023-07-27	3.8	3.91	3.78	3.9	0.003	0.54	0.0	0.04	12.89	0.00	2.061	7.96	0.00	1.6	98.4	0.0	1.57	0.58	0.79	1.40	3.9	0.003	0.51	0.0	0.04	14.72	0.00	2.453	8.14	1.22	2.6	97.4	0.0	1.96	0.95	0.60	0.79	1.47	11180	698	2	0	0	0	5703	logfile
✔	8PZ2	18035	2025-05-15	2023-07-26	4.2	3.68	4.11	3.8	0.006	0.70	0.0	0.05	14.68	0.00	2.090	11.85	0.07	8.9	91.1	0.0	-1.00	0.73	0.83	—	3.8	0.003	0.59	0.0	0.04	14.49	0.00	2.359	7.28	0.07	6.7	93.3	0.0	-0.46	0.79	0.73	0.82	—	13121	1678	6	0	0	0	0	logfile
✔	8K7C	36938	2025-05-12	2023-07-26	3.9	4.56	4.08	4.5	0.009	0.96	0.0	0.05	13.87	0.01	1.837	13.49	0.21	8.8	91.2	0.0	-1.19	0.66	0.84	2.01	4.5	0.004	0.68	0.0	0.04	16.53	0.00	1.869	7.10	3.49	5.5	94.5	0.0	0.46	0.42	0.62	0.82	1.64	9271	1174	4	0	6	0	0	logfile
✔	8PS8	17846	2025-05-19	2023-07-26	4.0	3.56	3.98	3.2	0.016	2.11	0.0	0.08	6.12	0.01	2.328	1.40	0.00	6.7	93.1	0.2	-2.93	0.69	0.76	—	3.2	0.002	0.63	0.0	0.04	4.34	0.00	2.531	1.66	0.00	6.5	93.5	0.0	-0.03	0.66	0.67	0.78	—	18674	3788	3	0	0	0	0	logfile
✔	8TL2	41359	2025-05-19	2023-07-26	3.2	3.44	3.22	3.4	0.005	0.76	0.0	0.05	16.90	0.00	2.072	2.22	0.26	2.4	97.6	0.0	0.18	0.71	0.86	2.90	3.4	0.007	0.80	0.0	0.05	14.90	0.00	2.499	2.63	3.39	4.0	95.9	0.1	-0.34	0.35	0.71	0.89	3.04	18323	2187	43	0	87	0	0	logfile
✘	8PZ1	18034	2025-05-15	2023-07-26	4.1	3.55	3.94	3.5	0.029	0.59	0.0	0.04	14.13	0.00	2.194	9.71	0.20	5.8	94.1	0.1	-0.57	0.69	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13849	1776	6	0	0	0	0	logfile
✔	8TL4	41361	2025-05-20	2023-07-26	3.2	3.35	3.17	3.3	0.004	0.70	0.0	0.05	16.04	0.00	2.030	1.65	0.09	2.5	97.5	0.0	0.17	0.70	0.86	2.45	3.3	0.003	0.57	0.0	0.04	14.84	0.00	2.393	2.36	2.27	2.7	97.3	0.0	0.33	0.91	0.70	0.88	2.53	20055	2418	42	0	81	0	0	logfile
✔	8TL5	41362	2025-05-20	2023-07-26	3.3	3.46	3.26	3.5	0.004	0.68	0.0	0.05	16.59	0.00	2.153	1.61	0.14	2.0	98.0	0.0	0.57	0.64	0.81	2.15	3.4	0.002	0.58	0.0	0.04	14.81	0.00	2.368	2.63	1.88	2.8	97.2	0.0	0.55	0.98	0.69	0.86	2.66	19830	2397	45	0	87	0	0	logfile
✔	8TL3	41360	2025-05-20	2023-07-26	3.1	3.24	3.06	3.2	0.004	0.65	0.0	0.05	15.47	0.00	2.049	1.87	0.19	2.0	97.9	0.0	0.58	0.71	0.81	2.83	3.2	0.007	0.80	0.0	0.05	14.65	0.01	2.458	2.20	1.97	3.0	96.9	0.1	-0.20	0.93	0.72	0.90	3.26	20070	2421	42	0	81	0	0	logfile
✔	8TL0	41358	2025-05-22	2023-07-26	3.1	3.94	3.26	3.7	0.007	0.84	0.0	0.05	13.38	0.01	2.221	5.54	0.04	5.1	94.9	0.0	-1.22	0.80	0.84	2.97	3.7	0.005	0.73	2.0	0.05	14.88	0.00	2.401	6.73	1.45	3.7	96.3	0.0	0.46	0.38	0.78	0.82	2.69	23119	2920	14	21	0	0	0	logfile
✔	8K7A	36936	2025-05-12	2023-07-26	4.2	6.79	4.47	6.7	0.007	1.46	2.0	0.07	14.73	0.01	1.952	7.00	0.30	6.0	93.3	0.7	-3.62	0.70	0.75	—	6.7	0.003	0.77	0.0	0.04	14.07	0.00	1.865	15.05	0.00	5.6	94.1	0.3	-0.43	1.06	0.71	0.82	—	8918	1126	4	0	4	0	0	logfile
✔	8K77	36935	2025-05-11	2023-07-26	3.11	3.30	—	3.4	0.008	1.00	0.0	0.05	16.52	0.00	2.160	9.40	0.00	3.3	96.7	0.0	0.80	0.60	0.79	2.09	3.4	0.003	0.52	0.0	0.04	16.56	0.00	2.492	5.16	2.62	3.0	97.0	0.0	1.14	0.38	0.59	0.81	2.39	8192	1012	4	0	6	0	0	logfile

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