Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K6M	36923	2025-05-12	2023-07-25	3.3	2.42	3.36	2.2	0.005	0.72	3.0	0.05	12.80	0.01	2.085	8.51	0.29	5.4	94.2	0.3	0.45	0.75	0.75	2.41	2.2	0.003	0.60	0.0	0.04	15.48	0.00	2.422	5.98	2.64	4.6	95.4	0.0	0.75	0.37	0.76	0.77	1.95	9327	1182	6	0	0	0	0	logfile
✔	8TKK	41354	2025-05-09	2023-07-25	3.37	4.30	3.34	3.8	0.002	0.32	0.0	0.01	24.68	0.00	2.004	6.57	0.00	0.0	0.0	0.0	—	0.88	0.83	—	3.8	0.008	0.78	0.0	0.04	25.10	0.01	1.904	22.84	0.00	0.0	0.0	0.0	—	0.30	0.88	0.85	—	2331	0	2	107	11	0	0	logfile
✔	8TKP	41356	2025-05-16	2023-07-25	2.9	3.69	2.99	3.2	0.005	0.91	3.0	0.05	16.84	0.01	1.152	7.90	0.94	2.1	97.9	0.0	2.30	0.59	0.61	2.02	3.2	0.003	0.74	0.0	0.04	15.64	0.00	2.260	7.33	1.54	1.9	98.1	0.0	1.99	2.00	0.65	0.82	1.65	14666	1698	14	0	54	0	0	logfile
✔	8K6N	36924	2025-05-12	2023-07-25	3.2	2.28	3.18	2.1	0.004	0.66	0.0	0.05	13.23	0.00	2.211	11.71	0.10	5.7	94.3	0.0	0.15	0.71	0.69	2.33	2.1	0.003	0.64	0.0	0.04	15.49	0.00	2.478	9.12	2.65	4.7	95.3	0.0	0.33	0.32	0.72	0.71	1.84	9291	1186	6	0	0	0	0	logfile
✔	8TKC	41346	2025-05-20	2023-07-25	3.1	3.33	3.13	3.3	0.011	0.97	1.0	0.05	16.99	0.00	2.134	1.57	0.33	2.6	97.3	0.1	0.00	0.66	0.85	2.69	3.3	0.010	0.95	2.0	0.04	16.30	0.00	2.399	1.80	1.74	2.9	97.0	0.1	-0.08	0.19	0.67	0.86	2.87	20064	2421	45	0	87	0	0	logfile
✔	8K6o	36925	2025-05-12	2023-07-25	3.3	2.34	3.28	3.2	0.002	0.58	0.0	0.04	12.87	0.00	2.255	6.19	0.10	1.8	98.2	0.0	2.01	0.72	0.65	2.18	2.1	0.003	0.60	0.0	0.04	15.48	0.00	2.556	6.14	2.15	2.7	97.3	0.0	1.79	0.69	0.75	0.76	2.25	9333	1183	6	0	0	0	0	logfile
✔	8K66	36918	2025-05-11	2023-07-25	2.53	2.66	2.51	2.7	0.006	1.05	0.0	0.20	19.61	0.00	1.997	8.02	3.20	1.6	98.4	0.0	-0.42	0.77	0.89	4.68	2.7	0.002	0.52	0.0	0.04	15.75	0.00	2.281	5.11	1.92	2.2	97.8	0.0	2.49	1.14	0.71	0.89	4.97	7620	886	6	0	16	130	0	logfile
✔	8K6K	36921	2025-05-11	2023-07-25	2.4	3.06	2.44	2.9	0.031	1.36	0.0	0.48	17.79	0.01	2.147	7.53	2.15	4.1	95.9	0.0	0.87	0.76	0.90	4.69	2.9	0.007	1.35	0.0	0.06	17.47	0.00	1.800	6.82	1.02	3.9	96.1	0.0	0.87	0.23	0.76	0.90	4.46	8593	1088	5	0	6	0	0	logfile
✔	8TKQ	41357	2025-05-17	2023-07-25	2.5	2.25	2.47	2.0	0.007	0.66	0.0	0.04	13.51	0.00	2.166	6.40	0.00	1.9	98.1	0.0	-1.02	0.78	0.80	4.01	2.0	0.005	0.55	0.0	0.04	16.39	0.00	2.544	4.64	1.84	1.4	98.6	0.0	2.16	0.92	0.81	0.83	2.78	15950	2024	11	0	0	0	0	logfile
✔	8TKo	41355	2025-05-16	2023-07-25	3.05	3.87	3.11	3.5	0.002	0.48	0.0	0.04	14.07	0.00	2.204	6.16	1.25	4.7	95.3	0.1	0.81	0.88	0.86	2.50	3.5	0.004	0.55	0.0	0.04	14.41	0.00	2.528	4.67	1.32	5.1	94.9	0.1	1.03	3.79	0.89	0.89	2.70	14282	1903	3	0	0	0	0	logfile
✔	8K6J	36920	2025-05-12	2023-07-25	2.77	3.51	2.83	3.3	0.030	1.64	0.0	0.49	17.76	0.01	2.130	8.32	2.49	4.1	95.9	0.0	0.88	0.76	0.86	3.44	3.3	0.005	1.58	0.0	0.06	17.33	0.00	1.791	6.77	2.15	4.0	96.0	0.0	0.94	0.27	0.74	0.84	3.49	8580	1087	5	0	6	0	0	logfile
✔	8K6L	36922	2025-05-09	2023-07-25	2.92	3.27	2.97	3.2	0.008	1.19	1.0	0.09	17.75	0.02	2.297	6.71	2.17	5.0	95.0	0.0	-2.44	0.63	0.80	2.79	3.2	0.002	0.67	0.0	0.05	15.24	0.00	2.570	3.05	1.45	2.8	97.2	0.0	1.74	0.60	0.59	0.80	2.51	4155	547	3	0	4	0	0	logfile
✘	8K69	36919	2025-05-11	2023-07-25	2.33	2.41	2.30	2.4	0.007	0.98	0.0	0.06	17.64	0.01	2.040	9.84	5.85	2.9	96.9	0.2	0.30	0.57	0.77	5.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7744	916	6	0	18	126	0	logfile
✔	8TK1	41321	2025-05-22	2023-07-25	2.98	2.28	3.00	2.0	0.003	0.54	0.0	0.04	13.82	0.00	2.031	3.43	0.08	3.9	96.1	0.0	-0.10	0.78	0.76	2.95	2.0	0.003	0.60	0.0	0.04	17.04	0.00	2.414	4.08	1.97	4.1	95.9	0.0	0.41	1.31	0.78	0.80	3.02	23424	2877	8	0	0	0	0	logfile
✔	8TJQ	41308	2025-05-12	2023-07-24	3.4	4.09	3.44	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.78	0.0	0.04	24.52	0.01	1.771	21.71	0.00	0.0	0.0	0.0	—	0.17	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	8TJX	41313	2025-05-11	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.63	0.0	0.04	23.99	0.01	1.833	9.77	0.00	0.0	0.0	0.0	—	0.82	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	8TJR	41309	2025-05-27	2023-07-24	3.29	3.62	3.36	3.6	0.005	0.82	0.0	0.05	15.51	0.00	2.196	2.72	0.10	5.0	95.0	0.0	-2.10	0.60	0.65	2.58	3.6	0.003	0.70	0.0	0.04	14.62	0.00	2.417	3.47	1.87	4.6	95.3	0.0	-1.56	1.30	0.64	0.85	2.75	18283	2196	25	0	78	0	0	logfile
✔	8K60	36914	2025-05-29	2023-07-24	3.4	3.21	3.47	3.3	0.009	1.10	0.0	0.07	18.95	0.01	2.223	6.43	1.02	2.5	97.5	0.0	-0.30	0.71	0.80	1.51	3.2	0.004	0.65	0.0	0.04	20.01	0.00	2.086	8.40	3.91	2.8	97.2	0.0	0.75	3.36	0.72	0.83	1.35	31659	3782	12	113	3	0	0	logfile
✔	8TJS	41310	2025-05-28	2023-07-24	3.31	3.56	3.35	3.5	0.006	1.02	3.0	0.06	15.31	0.01	2.280	3.97	0.71	5.3	94.7	0.0	-2.59	0.57	0.57	2.27	3.5	0.003	0.67	0.0	0.05	14.61	0.00	2.485	6.93	1.60	4.5	95.5	0.0	-1.08	1.51	0.76	0.88	2.50	20193	2448	27	0	78	0	0	logfile
✔	8TJY	41314	2025-05-22	2023-07-24	2.79	2.20	2.81	2.0	0.003	0.47	0.0	0.04	13.84	0.00	2.031	3.34	0.00	4.0	96.0	0.0	-0.10	0.81	0.79	2.98	2.0	0.003	0.57	0.0	0.04	17.19	0.00	2.520	3.67	2.15	3.8	96.2	0.0	0.19	3.60	0.81	0.82	2.85	22692	2788	8	0	0	0	0	logfile

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