Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TJU	41311	2025-05-13	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.71	0.0	0.04	24.83	0.01	1.789	23.91	0.00	0.0	0.0	0.0	—	0.46	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	8TJS	41310	2025-05-28	2023-07-24	3.31	3.56	3.35	3.5	0.006	1.02	3.0	0.06	15.31	0.01	2.280	3.97	0.71	5.3	94.7	0.0	-2.59	0.57	0.57	2.27	3.5	0.003	0.67	0.0	0.05	14.61	0.00	2.485	6.93	1.60	4.5	95.5	0.0	-1.08	1.51	0.76	0.88	2.50	20193	2448	27	0	78	0	0	logfile
✔	8PXB	18002	2025-05-11	2023-07-23	3.6	4.63	3.69	4.2	0.002	0.45	0.0	0.04	9.09	0.00	2.259	7.28	0.46	3.6	96.4	0.0	2.65	0.54	0.61	-0.50	4.2	0.006	1.20	1.0	0.06	14.10	0.00	2.027	21.47	2.44	5.9	94.1	0.0	0.49	1.43	0.55	0.74	-0.85	8102	1018	2	0	0	0	0	logfile
✔	8TJN	41305	2025-05-21	2023-07-23	3.73	4.83	3.77	3.7	0.003	0.60	0.0	0.04	16.13	0.00	2.200	11.43	1.55	6.7	92.9	0.4	-0.52	0.90	0.87	1.47	3.7	0.003	0.63	0.0	0.04	16.51	0.00	2.469	10.51	2.70	7.2	92.5	0.4	-0.67	0.38	0.90	0.87	1.43	21903	2939	6	0	0	0	0	logfile
✔	8TJo	41306	2025-05-22	2023-07-23	3.61	4.67	3.63	3.6	0.003	0.69	1.0	0.04	16.36	0.00	2.075	11.63	2.78	8.9	90.8	0.3	-1.32	0.87	0.81	1.64	3.6	0.003	0.66	0.0	0.04	16.31	0.00	2.481	9.82	2.65	8.0	91.8	0.2	-0.70	1.64	0.91	0.88	1.75	22287	2992	6	0	0	0	0	logfile
✔	8TJP	41307	2025-05-15	2023-07-23	3.71	4.71	3.82	4.0	0.003	0.60	0.0	0.04	13.18	0.00	2.161	4.65	0.73	3.0	96.9	0.1	0.65	0.90	0.83	2.10	4.1	0.002	0.59	0.0	0.04	13.46	0.00	2.592	3.98	0.73	1.9	98.0	0.1	1.91	0.45	0.93	0.88	1.78	13464	1792	2	0	0	0	0	logfile
✔	8K5A	36899	2025-05-26	2023-07-21	3.3	3.65	3.38	3.7	0.004	0.77	0.0	0.04	16.78	0.00	2.119	17.80	0.00	4.3	95.5	0.2	-1.17	0.62	0.61	1.27	3.7	0.006	0.80	0.0	0.05	19.15	0.01	2.211	17.80	3.29	6.7	93.1	0.2	-1.25	1.37	0.70	0.75	1.02	27505	3355	9	61	0	0	0	logfile
✔	8K5H	36906	2025-05-25	2023-07-21	3.22	3.62	3.18	3.4	0.012	1.01	0.0	0.06	16.11	0.01	1.977	13.89	0.14	8.9	91.1	0.0	-1.87	0.84	0.84	2.15	3.4	0.004	0.77	1.0	0.05	16.31	0.00	2.311	6.25	2.49	4.4	95.6	0.0	-0.54	0.50	0.85	0.88	2.02	25502	3171	16	0	50	0	0	logfile
✔	8K58	36897	2025-05-26	2023-07-21	3.15	3.47	3.30	3.6	0.003	0.71	0.0	0.04	17.15	0.01	2.144	18.16	0.00	4.8	95.1	0.1	-0.71	0.56	0.60	1.20	3.5	0.004	0.68	0.0	0.04	18.96	0.00	2.444	14.97	2.31	4.9	95.0	0.1	-0.76	1.39	0.66	0.70	1.03	27505	3355	9	61	0	0	0	logfile
✔	8K59	36898	2025-05-30	2023-07-21	3.5	3.71	3.63	3.7	0.004	0.71	0.0	0.04	18.47	0.00	2.102	13.51	0.03	4.3	95.4	0.3	-0.15	0.65	0.69	1.84	3.7	0.005	0.71	0.0	0.04	19.84	0.00	2.026	13.54	2.29	5.5	94.3	0.2	-0.14	1.19	0.75	0.78	1.60	32740	3827	10	129	0	0	0	logfile
✔	8K5D	36902	2025-05-09	2023-07-21	3.74	3.93	3.64	3.9	0.007	0.76	0.0	0.04	19.08	0.00	2.203	11.34	0.40	5.9	94.1	0.0	0.46	0.52	0.79	2.10	3.9	0.004	0.69	0.0	0.04	19.42	0.01	2.486	9.84	6.88	6.6	93.4	0.0	0.38	0.25	0.52	0.79	2.07	2345	291	2	0	1	0	0	logfile
✔	8K5B	36900	2025-05-09	2023-07-21	3.43	3.67	3.30	3.6	0.004	0.73	0.0	0.05	17.22	0.00	2.213	12.54	1.18	5.5	94.5	0.0	0.37	0.48	0.77	1.68	3.6	0.004	0.73	0.0	0.05	17.85	0.00	2.256	12.75	6.69	5.2	94.8	0.0	0.64	0.28	0.48	0.78	2.17	2374	291	2	0	1	0	0	logfile
✔	8K5G	36905	2025-05-10	2023-07-21	3.41	3.86	3.37	3.7	0.003	0.66	0.0	0.04	13.67	0.00	2.235	6.18	0.00	8.0	91.8	0.2	-2.07	0.68	0.85	2.82	3.7	0.003	0.67	0.0	0.04	15.84	0.00	2.491	5.13	3.00	8.0	91.8	0.2	-1.60	1.45	0.64	0.86	2.66	3381	431	3	0	0	0	0	logfile
✔	8K52	36893	2025-05-15	2023-07-20	2.94	3.68	2.94	3.5	0.004	0.76	0.0	0.04	16.04	0.00	2.130	15.73	3.32	5.4	94.4	0.2	1.07	0.68	0.80	1.81	3.4	0.003	0.70	0.0	0.04	16.47	0.00	2.151	11.17	3.39	5.2	94.8	0.0	0.98	1.65	0.69	0.84	2.40	12506	1548	6	2	2	0	0	logfile
✔	8K4o	36888	2025-05-11	2023-07-20	3.01	3.44	3.13	3.4	0.003	0.59	0.0	0.04	17.48	0.00	2.169	7.42	6.21	7.5	92.5	0.0	-1.17	0.64	0.87	2.22	3.4	0.002	0.56	0.0	0.04	17.34	0.00	2.545	4.53	4.37	6.7	93.3	0.0	-0.61	0.93	0.62	0.86	1.96	7946	1015	5	0	0	0	0	logfile
✔	8K4U	36892	2025-05-10	2023-07-20	3.2	3.44	3.23	3.4	0.005	0.64	0.0	0.04	11.92	0.01	2.101	3.72	4.92	3.1	96.9	0.0	-4.11	0.71	0.78	3.40	3.4	0.005	1.06	0.0	0.04	15.29	0.01	1.979	11.17	4.20	3.6	96.4	0.0	-0.61	1.17	0.74	0.82	2.89	6323	778	3	0	1	0	0	logfile
✔	8TJ3	41299	2025-05-15	2023-07-20	3.2	3.62	—	3.4	0.004	0.72	0.0	0.04	13.85	0.02	2.416	10.13	1.16	7.4	92.4	0.1	0.15	0.73	0.58	0.54	3.4	0.004	0.64	0.0	0.04	15.49	0.00	2.222	13.18	1.30	6.9	93.1	0.0	0.29	1.30	0.79	0.76	1.83	13127	833	2	0	0	0	6652	logfile
✔	8PWL	17994	2025-05-14	2023-07-20	4.73	5.25	4.85	4.8	0.002	0.51	0.0	0.04	13.55	0.00	2.250	5.28	0.00	2.0	98.0	0.0	-0.12	0.83	0.64	—	4.8	0.002	0.60	0.0	0.04	13.94	0.00	2.461	7.78	0.00	2.6	97.4	0.0	0.62	0.40	0.86	0.80	—	12266	1541	2	0	0	0	0	logfile
✔	8PWH	17993	2025-05-14	2023-07-20	3.17	3.98	—	3.7	0.004	0.65	0.0	0.05	14.69	0.00	2.087	15.50	4.29	7.5	92.4	0.1	-1.53	0.84	0.76	2.00	3.7	0.004	0.69	0.0	0.05	14.05	0.00	2.360	10.73	3.82	7.3	92.6	0.1	-1.17	1.29	0.84	0.77	1.70	11535	1494	8	0	9	0	0	logfile
✔	8K4P	36889	2025-05-11	2023-07-20	2.81	3.21	2.94	3.2	0.003	0.58	0.0	0.04	17.49	0.00	2.120	6.56	2.53	3.5	96.5	0.0	0.06	0.63	0.87	2.55	3.2	0.003	0.57	0.0	0.04	17.47	0.00	2.566	3.86	3.30	3.7	96.3	0.0	0.65	0.37	0.65	0.88	2.62	7231	918	4	0	0	0	0	logfile

• ← previous
• Page 195 of 680
• next →