Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PHF	17660	2025-05-12	2023-06-19	3.6	3.88	3.58	4.0	0.004	0.65	0.0	0.04	16.42	0.00	2.134	11.77	0.11	4.6	95.4	0.0	0.67	0.67	0.71	1.88	3.9	0.004	0.62	0.0	0.04	17.08	0.00	2.567	8.19	2.39	3.1	96.9	0.0	1.21	0.51	0.66	0.72	1.67	8640	1094	4	0	2	0	0	logfile
✔	8PH9	17657	2025-05-25	2023-06-19	3.0	3.44	2.98	3.2	0.002	0.49	0.0	0.04	18.53	0.00	2.055	7.61	1.57	2.2	97.8	0.0	1.39	0.90	0.90	2.15	3.2	0.004	0.57	0.0	0.04	18.58	0.00	1.997	5.83	1.53	2.6	97.4	0.0	1.19	0.87	0.91	0.92	2.46	26957	3218	9	87	3	0	0	logfile
✔	8PHE	17659	2025-05-12	2023-06-19	3.1	3.23	3.03	3.3	0.003	0.50	0.0	0.04	14.63	0.00	2.148	8.75	0.00	4.1	95.9	0.0	0.27	0.66	0.83	3.12	3.3	0.003	0.51	0.0	0.04	16.90	0.00	2.564	6.40	1.04	3.8	96.2	0.0	1.65	0.35	0.67	0.85	2.95	8914	1132	6	0	0	38	0	logfile
✔	8JS8	36616	2025-05-11	2023-06-19	2.88	3.06	—	3.1	0.003	0.62	0.0	0.04	16.36	0.00	2.188	7.56	2.28	3.1	96.9	0.0	0.62	0.62	0.84	2.55	3.1	0.003	0.54	0.0	0.04	16.42	0.00	2.393	5.41	2.62	2.9	97.1	0.0	1.10	0.36	0.61	0.84	2.84	8189	1012	4	0	6	0	0	logfile
✔	8JS9	36617	2025-05-11	2023-06-19	3.01	3.19	—	3.2	0.004	0.56	0.0	0.04	15.24	0.00	2.136	7.19	0.23	3.2	96.8	0.0	0.68	0.62	0.85	3.09	3.2	0.005	0.54	0.0	0.04	15.29	0.00	2.588	5.96	1.59	3.0	97.0	0.0	0.81	0.29	0.59	0.84	2.92	8177	1012	4	0	5	0	0	logfile
✔	8T6X	41083	2025-05-15	2023-06-19	3.08	3.82	3.16	3.4	0.004	0.72	0.0	0.04	19.03	0.01	2.015	3.89	0.26	2.2	97.8	0.0	-0.80	0.85	0.84	2.74	3.4	0.003	0.52	0.0	0.03	19.18	0.00	1.948	6.38	1.47	1.7	98.3	0.0	0.87	1.68	0.86	0.86	2.52	13443	1278	6	139	3	0	0	logfile
✔	8T76	41085	2025-05-17	2023-06-19	3.42	4.21	3.52	3.5	0.005	1.02	0.0	0.05	18.99	0.01	2.278	4.93	0.32	2.5	97.5	0.0	-1.23	0.83	0.73	1.19	3.6	0.004	0.68	0.0	0.04	19.54	0.00	2.499	14.41	1.51	3.8	96.2	0.0	-0.28	1.41	0.85	0.78	1.42	11049	1088	4	111	0	0	0	logfile
✔	8T78	41087	2025-05-13	2023-06-19	3.02	3.65	3.08	3.5	0.007	1.07	0.0	0.06	19.85	0.01	2.181	4.81	0.51	2.5	97.5	0.0	-0.99	0.75	0.84	2.70	3.5	0.003	0.56	0.0	0.04	19.75	0.00	2.476	6.58	3.73	3.1	96.9	0.0	0.93	1.12	0.76	0.85	2.75	9561	863	4	116	0	0	0	logfile
✔	8T6Y	41084	2025-05-14	2023-06-19	2.88	3.64	2.96	3.4	0.005	0.98	0.0	0.05	18.64	0.01	2.209	4.32	1.13	1.9	98.1	0.0	-1.21	0.81	0.84	2.74	3.3	0.003	0.59	0.0	0.04	18.97	0.00	2.514	6.80	1.74	2.5	97.5	0.0	0.99	0.50	0.81	0.85	2.70	11482	1148	4	109	0	0	0	logfile
✔	8T6U	41081	2025-05-12	2023-06-18	3.13	3.96	3.18	3.7	0.011	1.53	0.0	0.18	15.19	0.01	2.246	4.28	0.33	2.6	97.2	0.2	-3.15	0.67	0.86	2.94	3.7	0.003	0.59	0.0	0.04	14.52	0.00	2.503	6.99	1.56	2.1	97.9	0.0	2.13	1.20	0.64	0.84	2.60	8638	1032	8	0	16	36	0	logfile
✔	8T6T	41080	2025-05-14	2023-06-18	3.04	3.66	3.12	3.4	0.005	1.34	0.0	0.10	18.87	0.01	2.222	4.86	0.48	2.7	97.3	0.0	-1.61	0.82	0.87	2.90	3.4	0.003	0.59	0.0	0.04	19.23	0.00	2.547	5.93	1.33	3.1	96.9	0.0	0.03	1.24	0.83	0.87	2.62	12306	1168	4	129	0	0	0	logfile
✔	8JRR	36603	2025-05-15	2023-06-17	4.35	3.10	4.81	2.7	0.013	1.08	0.0	0.06	16.68	0.01	2.229	15.07	1.66	9.4	90.6	0.0	-4.31	0.68	0.65	—	2.1	0.007	1.09	0.0	0.05	14.28	0.00	2.343	14.87	0.00	5.3	94.7	0.0	-2.25	1.04	0.67	0.66	—	12370	1552	6	0	4	0	0	logfile
✔	8JRN	36599	2025-05-15	2023-06-17	2.6	2.12	2.69	1.7	0.004	0.52	0.0	0.04	17.31	0.00	1.840	9.52	0.26	1.7	98.3	0.0	0.37	0.80	0.80	2.85	1.7	0.003	0.57	0.0	0.04	18.05	0.00	2.492	7.35	2.48	1.7	98.3	0.0	1.29	0.50	0.80	0.81	2.83	13672	1660	6	0	4	0	0	logfile
✔	8JRo	36600	2025-05-15	2023-06-17	3.01	2.24	3.11	2.0	0.003	0.51	0.0	0.04	16.68	0.00	2.174	7.13	0.26	2.5	97.5	0.0	-0.82	0.78	0.80	2.57	2.0	0.003	0.56	0.0	0.04	17.39	0.00	2.461	4.96	1.89	2.5	97.5	0.0	0.88	1.89	0.78	0.80	2.78	13672	1660	6	0	4	0	0	logfile
✔	8PG0	17655	2025-05-10	2023-06-17	2.97	2.85	2.96	2.9	0.022	0.95	0.0	0.06	16.43	0.01	2.211	17.04	0.80	4.2	95.6	0.1	0.35	0.56	0.78	2.40	2.8	0.003	0.66	0.0	0.04	15.84	0.00	2.585	8.90	3.04	2.8	97.2	0.0	0.87	0.43	0.55	0.79	2.61	5816	737	4	0	5	0	0	logfile
✔	8JRP	36601	2025-05-15	2023-06-17	3.58	2.47	3.67	2.0	0.003	0.55	0.0	0.04	16.57	0.00	2.212	9.71	0.00	3.0	97.0	0.0	0.66	0.74	0.74	1.10	1.8	0.004	0.91	1.0	0.04	17.90	0.00	2.147	12.07	2.96	3.6	96.4	0.0	0.33	1.25	0.74	0.75	0.90	13630	1660	6	0	4	0	0	logfile
✔	8JRQ	36602	2025-05-15	2023-06-17	4.15	3.00	4.31	3.6	0.008	1.14	0.0	0.06	16.23	0.01	2.210	13.19	0.69	8.3	91.7	0.0	-4.43	0.69	0.67	—	2.2	0.003	0.73	0.0	0.05	14.35	0.00	2.076	14.63	0.00	3.6	96.4	0.0	-0.98	0.98	0.68	0.69	—	13270	1634	6	0	4	0	0	logfile
✔	8T6K	41070	2025-05-27	2023-06-16	3.0	3.16	3.02	3.1	0.025	2.47	154.0	0.22	15.07	0.01	2.505	0.47	1.74	2.3	97.7	0.0	1.56	0.65	0.78	5.52	3.1	0.003	0.55	0.0	0.04	15.86	0.00	2.547	0.98	0.37	0.3	99.7	0.0	1.72	0.95	0.67	0.81	5.17	29722	1890	14	0	0	0	14616	logfile
✔	8PFJ	17647	2025-05-26	2023-06-16	3.4	3.90	3.33	3.6	0.002	0.54	0.0	0.04	19.72	0.00	2.011	9.27	3.15	2.3	97.6	0.0	1.51	0.90	0.87	1.48	3.6	0.003	0.53	0.0	0.04	19.64	0.00	2.057	7.42	3.08	2.5	97.5	0.0	1.43	0.32	0.92	0.89	1.59	27856	3313	10	93	3	0	0	logfile
✔	8T6J	41069	2025-05-14	2023-06-16	3.5	3.65	—	3.5	0.003	0.56	0.0	0.04	13.81	0.00	2.196	6.10	0.00	5.1	94.9	0.0	0.00	0.80	0.79	1.76	3.5	0.005	0.64	0.0	0.04	15.85	0.00	2.566	6.01	3.30	5.9	94.1	0.0	-0.12	0.33	0.81	0.80	1.83	11652	1534	4	0	2	0	0	logfile

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