Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PFJ	17647	2025-05-26	2023-06-16	3.4	3.90	3.33	3.6	0.002	0.54	0.0	0.04	19.72	0.00	2.011	9.27	3.15	2.3	97.6	0.0	1.51	0.90	0.87	1.48	3.6	0.003	0.53	0.0	0.04	19.64	0.00	2.057	7.42	3.08	2.5	97.5	0.0	1.43	0.32	0.92	0.89	1.59	27856	3313	10	93	3	0	0	logfile
✔	8JR8	36592	2025-05-15	2023-06-16	3.48	4.07	3.49	3.8	0.003	0.66	0.0	0.04	20.31	0.00	2.125	18.84	0.40	6.1	93.9	0.0	-1.72	0.83	0.79	1.51	3.8	0.005	0.91	1.0	0.05	20.64	0.00	2.252	20.37	4.68	6.9	93.0	0.1	-1.28	1.52	0.84	0.80	1.38	13127	1414	8	75	0	0	0	logfile
✔	8T6Q	41077	2025-05-24	2023-06-16	3.5	3.72	3.54	3.7	0.003	0.56	0.0	0.04	15.87	0.00	2.051	6.48	0.51	2.9	97.1	0.0	0.34	0.69	0.76	2.73	3.7	0.004	0.59	0.0	0.04	16.37	0.00	2.235	3.65	1.52	4.4	95.6	0.0	0.34	1.10	0.71	0.77	2.68	25482	1620	12	0	0	0	12534	logfile
✔	8T6K	41070	2025-05-27	2023-06-16	3.0	3.16	3.02	3.1	0.025	2.47	154.0	0.22	15.07	0.01	2.505	0.47	1.74	2.3	97.7	0.0	1.56	0.65	0.78	5.52	3.1	0.003	0.55	0.0	0.04	15.86	0.00	2.547	0.98	0.37	0.3	99.7	0.0	1.72	0.95	0.67	0.81	5.17	29722	1890	14	0	0	0	14616	logfile
✔	8T6J	41069	2025-05-14	2023-06-16	3.5	3.65	—	3.5	0.003	0.56	0.0	0.04	13.81	0.00	2.196	6.10	0.00	5.1	94.9	0.0	0.00	0.80	0.79	1.76	3.5	0.005	0.64	0.0	0.04	15.85	0.00	2.566	6.01	3.30	5.9	94.1	0.0	-0.12	0.33	0.81	0.80	1.83	11652	1534	4	0	2	0	0	logfile
✔	8T69	41066	2025-05-09	2023-06-15	2.89	3.18	2.89	3.2	0.004	0.67	0.0	0.04	10.45	0.01	2.381	3.52	0.64	1.8	98.2	0.0	1.12	0.59	0.82	3.29	3.2	0.003	0.61	0.0	0.04	13.67	0.01	2.586	4.53	2.89	2.1	97.9	0.0	2.13	1.00	0.58	0.82	2.82	2923	386	2	0	1	0	0	logfile
✔	8PFB	17645	2025-05-18	2023-06-15	3.67	4.42	3.71	4.0	0.004	0.90	0.0	0.05	14.62	0.01	2.194	3.85	0.32	1.5	98.5	0.0	-1.08	0.68	0.82	2.30	4.1	0.003	0.63	0.0	0.04	15.31	0.00	2.064	6.42	0.74	3.6	96.4	0.0	0.86	1.62	0.68	0.82	2.23	17137	1136	9	0	0	0	8598	logfile
✔	8T6A	41067	2025-05-09	2023-06-15	3.17	3.52	3.16	3.6	0.004	0.60	0.0	0.04	10.37	0.00	2.248	3.67	1.28	2.1	97.9	0.0	1.58	0.59	0.80	2.58	3.5	0.003	0.62	0.0	0.04	13.50	0.00	2.508	5.84	1.92	1.8	98.2	0.0	2.42	0.33	0.52	0.79	2.36	2947	387	2	0	1	0	0	logfile
✔	8T6B	41068	2025-05-09	2023-06-15	3.72	4.04	3.76	4.0	0.004	0.78	0.0	0.04	14.45	0.01	2.237	5.02	0.00	2.6	97.4	0.0	-1.30	0.47	0.68	1.39	4.1	0.003	0.78	0.0	0.04	15.74	0.01	2.603	9.21	3.21	3.9	96.1	0.0	0.02	0.46	0.46	0.68	1.72	2916	387	2	0	1	0	0	logfile
✔	8PFG	17646	2025-05-26	2023-06-15	3.1	3.57	3.10	3.4	0.003	0.45	0.0	0.04	18.94	0.00	1.999	8.95	5.49	3.0	97.0	0.0	0.76	0.90	0.88	1.92	3.4	0.007	0.69	0.0	0.04	19.35	0.00	1.870	9.91	3.01	4.0	95.9	0.0	0.43	1.71	0.91	0.89	1.84	27809	3311	10	92	2	0	0	logfile
✔	8T60	41062	2025-05-16	2023-06-14	3.29	3.54	3.32	3.4	0.003	0.51	0.0	0.04	11.07	0.00	2.114	4.09	1.85	6.6	93.4	0.0	0.46	0.70	0.78	3.49	3.4	0.003	0.54	0.0	0.04	13.23	0.00	2.103	5.76	1.36	5.7	94.3	0.0	0.62	0.62	0.70	0.79	3.14	14921	978	5	0	1	0	7418	logfile
✔	8PEo	17633	2025-05-15	2023-06-14	2.69	3.21	2.84	2.7	0.005	0.77	0.0	0.05	29.82	0.01	2.201	8.09	0.14	1.9	98.1	0.0	0.99	0.92	0.88	2.79	2.8	0.004	0.62	0.0	0.03	28.22	0.00	2.437	7.14	1.26	2.3	97.7	0.0	2.62	1.38	0.93	0.92	2.80	12835	853	12	294	0	0	0	logfile
✔	8JQG	36571	2025-05-12	2023-06-14	3.72	3.93	3.78	3.9	0.004	0.82	0.0	0.05	17.22	0.00	2.217	22.35	0.00	5.1	94.9	0.0	-0.73	0.76	0.75	1.76	3.9	0.003	0.72	0.0	0.04	18.19	0.00	2.411	13.57	2.38	4.5	95.5	0.0	-0.02	0.61	0.76	0.77	1.28	8708	1061	1	0	0	0	0	logfile
✔	8JQS	36578	2025-05-15	2023-06-14	2.63	2.24	2.57	2.0	0.007	0.78	0.0	0.05	16.25	0.01	2.139	5.77	2.41	6.0	94.0	0.0	-1.47	0.79	0.80	4.04	2.0	0.003	0.66	0.0	0.04	17.12	0.00	2.447	3.98	1.68	4.8	95.2	0.0	-0.15	0.99	0.83	0.84	4.16	8890	1149	6	0	0	0	0	logfile
✔	8JQH	36572	2025-05-13	2023-06-14	4.2	4.46	4.29	4.3	0.006	0.98	0.0	0.05	13.86	0.01	2.202	31.35	0.09	5.4	94.5	0.1	-1.95	0.80	0.76	—	4.3	0.003	0.69	0.0	0.04	14.25	0.00	2.356	13.26	0.09	4.5	95.5	0.0	-0.91	1.73	0.81	0.80	—	9920	1206	1	0	0	0	0	logfile
✔	8T5S	41060	2025-05-10	2023-06-14	2.9	3.70	2.99	3.5	0.002	0.50	0.0	0.03	16.22	0.00	2.212	10.25	0.80	3.2	96.8	0.0	2.43	0.80	0.77	1.26	3.5	0.003	0.62	0.0	0.04	16.12	0.00	1.941	9.25	3.50	3.8	96.2	0.0	1.77	1.23	0.82	0.82	2.00	6799	693	4	60	3	0	0	logfile
✔	8JQM	36575	2025-05-21	2023-06-14	2.8	2.56	2.74	2.7	0.004	0.66	0.0	0.04	13.52	0.00	2.139	5.07	1.40	4.7	95.1	0.2	-0.37	0.66	0.86	4.19	2.7	0.002	0.58	0.0	0.04	16.01	0.00	2.511	3.19	2.48	4.5	95.4	0.1	0.18	0.92	0.69	0.89	4.06	14376	1820	8	0	0	0	0	logfile
✔	8PEN	17632	2025-05-26	2023-06-14	3.1	3.82	3.19	3.5	0.002	0.56	0.0	0.04	19.24	0.00	2.030	9.32	1.49	2.3	97.7	0.0	1.05	0.91	0.87	1.52	3.5	0.004	0.57	0.0	0.04	19.31	0.00	1.934	7.81	2.55	2.7	97.3	0.0	1.05	0.89	0.92	0.90	1.62	27734	3309	10	88	3	0	0	logfile
✔	8JQN	36576	2025-05-15	2023-06-14	2.8	2.47	2.67	2.8	0.007	0.71	1.0	0.05	12.26	0.00	2.226	5.13	1.37	5.8	94.1	0.1	-0.89	0.54	0.75	4.97	2.7	0.003	0.63	0.0	0.04	15.49	0.00	2.526	3.46	1.58	4.7	95.3	0.0	-0.36	0.43	0.69	0.88	4.40	8919	1149	6	0	0	0	0	logfile
✔	8JQi	36573	2025-05-14	2023-06-14	4.1	4.43	4.24	4.2	0.005	0.85	0.0	0.05	13.61	0.01	2.226	25.62	0.08	5.2	94.8	0.0	-1.03	0.79	0.73	—	4.2	0.003	0.69	0.0	0.04	14.17	0.00	2.426	14.09	0.00	4.2	95.8	0.0	-0.94	1.24	0.79	0.71	—	11180	1369	2	0	0	0	0	logfile

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