Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T5S	41060	2025-05-10	2023-06-14	2.9	3.70	2.99	3.5	0.002	0.50	0.0	0.03	16.22	0.00	2.212	10.25	0.80	3.2	96.8	0.0	2.43	0.80	0.77	1.26	3.5	0.003	0.62	0.0	0.04	16.12	0.00	1.941	9.25	3.50	3.8	96.2	0.0	1.77	1.23	0.82	0.82	2.00	6799	693	4	60	3	0	0	logfile
✔	8JPX	36489	2025-05-16	2023-06-13	2.9	3.21	3.11	3.2	0.003	0.56	0.0	0.04	21.05	0.01	1.900	6.83	0.50	7.3	92.7	0.0	-0.57	0.76	0.89	3.28	3.2	0.007	0.68	0.0	0.05	21.53	0.00	1.842	5.74	2.55	7.9	92.0	0.1	-0.62	0.22	0.71	0.89	3.31	14362	1540	12	80	6	0	0	logfile
✔	8JQB	36563	2025-05-29	2023-06-13	3.2	3.45	3.42	3.4	0.005	1.16	0.0	0.06	18.55	0.01	2.285	5.74	0.51	7.4	91.7	0.8	-3.29	0.74	0.83	2.33	3.4	0.004	0.73	0.0	0.05	18.47	0.00	2.488	8.56	1.90	8.4	91.0	0.6	-1.51	0.97	0.78	0.87	2.21	31608	3868	8	0	0	0	0	logfile
✔	8T5C	41048	2025-05-16	2023-06-13	4.7	4.69	4.42	4.5	0.005	0.89	0.0	0.05	20.84	0.01	2.044	5.82	1.11	13.5	85.9	0.6	-2.26	0.74	0.72	—	4.5	0.006	0.99	0.0	0.05	14.29	0.01	2.284	20.46	0.00	16.0	83.5	0.6	-2.64	1.79	0.78	0.79	—	14189	1651	35	0	91	0	0	logfile
✔	8PDY	17626	2025-05-25	2023-06-13	2.8	4.36	3.50	3.9	0.002	0.55	0.0	0.04	18.69	0.00	2.070	10.32	0.22	2.7	97.2	0.0	0.68	0.93	0.87	1.41	3.9	0.004	0.67	0.0	0.04	19.20	0.00	2.062	9.12	2.59	3.6	96.3	0.0	0.89	1.23	0.93	0.89	1.65	26887	3221	9	82	3	0	0	logfile
✔	8T50	41041	2025-05-15	2023-06-12	3.6	4.00	3.62	3.9	0.003	0.67	0.0	0.04	14.50	0.00	2.194	7.66	0.47	3.5	96.5	0.0	2.00	0.60	0.64	1.93	3.9	0.006	0.71	0.0	0.04	15.61	0.00	2.449	8.77	7.98	4.9	95.1	0.0	2.01	0.33	0.69	0.75	2.05	12720	1896	8	0	4	0	0	logfile
✔	8PD8	17605	2025-05-18	2023-06-12	3.3	2.43	3.20	2.1	0.005	0.85	0.0	0.05	13.01	0.01	2.240	6.27	0.00	2.4	97.6	0.0	0.77	0.68	0.71	1.97	2.1	0.003	0.65	0.0	0.04	15.96	0.00	2.515	7.36	1.66	1.1	98.9	0.0	2.18	1.21	0.77	0.78	1.81	16122	2036	4	0	2	0	0	logfile
✔	8PDM	17614	2025-05-28	2023-06-12	3.3	3.51	3.38	3.5	0.022	0.73	0.0	0.05	15.48	0.01	0.481	15.39	0.00	2.0	98.0	0.0	0.75	0.75	0.79	1.66	3.5	0.004	0.61	0.0	0.04	17.36	0.01	2.166	8.94	1.40	2.7	97.3	0.0	1.86	1.21	0.76	0.81	0.73	31471	3861	22	77	0	0	0	logfile
✔	8JPo	36485	2025-05-14	2023-06-12	3.4	3.43	3.15	3.4	0.004	0.63	0.0	0.04	12.94	0.00	2.267	6.38	0.00	2.8	97.2	0.0	0.44	0.75	0.90	3.16	3.4	0.003	0.55	0.0	0.04	14.15	0.00	2.288	4.69	0.56	3.2	96.8	0.0	1.58	0.38	0.74	0.91	2.52	11476	1466	4	0	8	0	0	logfile
✔	8PDR	17619	2025-05-29	2023-06-12	4.0	4.33	4.07	4.1	0.006	0.61	0.0	0.04	14.93	0.00	0.603	14.55	0.00	1.2	98.8	0.0	0.34	0.63	0.53	—	4.1	0.004	0.71	0.0	0.04	17.10	0.00	2.208	11.89	1.91	2.0	98.0	0.0	1.30	1.85	0.75	0.73	—	32142	3938	33	77	0	0	0	logfile
✔	8PD9	17607	2025-05-11	2023-06-12	3.6	2.49	3.49	2.3	0.005	0.73	0.0	0.04	13.44	0.01	2.197	5.39	0.11	2.1	97.9	0.0	2.01	0.64	0.68	1.57	2.2	0.004	0.67	0.0	0.04	16.84	0.00	2.501	7.32	2.50	1.6	98.4	0.0	1.75	1.92	0.73	0.75	1.68	8107	1024	2	0	1	0	0	logfile
✔	8JPN	36484	2025-05-11	2023-06-12	2.9	3.03	2.74	3.0	0.004	0.61	0.0	0.04	15.56	0.00	2.268	3.27	0.36	3.3	96.7	0.0	1.11	0.60	0.72	1.27	3.0	0.003	0.60	0.0	0.04	16.15	0.00	2.384	2.54	2.49	2.8	97.2	0.0	1.33	1.19	0.73	0.90	3.32	8557	1157	6	0	1	0	0	logfile
✔	8PDP	17617	2025-05-27	2023-06-12	2.9	3.05	2.91	3.1	0.004	0.58	0.0	0.04	14.90	0.00	0.568	13.90	0.00	1.4	98.6	0.0	0.66	0.73	0.81	2.73	3.1	0.004	0.66	0.0	0.04	16.33	0.00	2.490	9.42	1.80	1.7	98.3	0.0	1.83	0.49	0.72	0.83	2.54	30160	3700	30	70	0	0	0	logfile
✔	8PDo	17616	2025-05-10	2023-06-12	3.1	3.28	3.07	3.3	0.006	0.66	0.0	0.04	15.62	0.00	2.068	8.31	0.00	1.9	98.1	0.0	0.19	0.60	0.81	3.39	3.3	0.003	0.49	0.0	0.04	16.88	0.00	2.589	7.17	0.67	1.4	98.6	0.0	1.34	0.36	0.59	0.82	2.34	5722	702	3	14	0	0	0	logfile
✔	8JPR	36487	2025-05-14	2023-06-12	3.4	3.63	3.40	3.7	0.003	0.56	0.0	0.04	13.51	0.00	2.111	6.61	0.00	2.2	97.8	0.0	1.04	0.69	0.82	2.53	3.6	0.004	0.59	0.0	0.04	15.34	0.00	2.071	6.12	1.21	2.9	97.1	0.0	1.99	1.06	0.67	0.88	1.70	11396	1460	4	0	8	0	0	logfile
✔	8PDL	17613	2025-05-26	2023-06-12	3.1	3.30	3.17	3.3	0.009	0.83	0.0	0.06	15.94	0.01	0.922	18.38	0.00	1.7	98.3	0.0	0.63	0.73	0.80	1.93	3.3	0.004	0.71	1.0	0.04	17.12	0.00	1.692	9.71	0.74	2.2	97.8	0.0	1.10	0.41	0.74	0.81	2.07	28610	3510	20	70	0	0	0	logfile
✔	8PDQ	17618	2025-05-30	2023-06-12	3.1	3.25	3.11	3.2	0.022	0.57	0.0	0.04	15.29	0.00	0.371	15.65	0.00	1.9	98.1	0.0	0.16	0.77	0.82	2.60	3.2	0.003	0.52	0.0	0.04	16.29	0.00	2.484	8.58	1.47	2.1	97.9	0.0	1.47	0.35	0.78	0.84	2.17	33176	4070	33	77	0	0	0	logfile
✔	8T57	41044	2025-05-12	2023-06-12	2.7	2.45	2.64	3.0	0.027	1.65	0.0	0.12	11.19	0.01	2.385	1.27	0.00	0.8	99.2	0.0	0.77	0.80	0.82	4.03	3.0	0.003	0.59	0.0	0.04	14.25	0.00	2.590	6.74	1.44	1.6	98.4	0.0	2.29	0.58	0.77	0.83	2.80	8466	1008	4	0	20	0	0	logfile
✔	8T56	41043	2025-05-15	2023-06-12	2.8	2.38	2.73	2.9	0.027	1.66	0.0	0.11	14.22	0.01	2.385	1.27	0.00	0.5	99.5	0.0	0.58	0.84	0.87	4.71	2.9	0.004	0.58	0.0	0.04	15.57	0.00	2.503	3.72	2.20	0.8	99.2	0.0	3.15	1.18	0.81	0.87	3.39	13096	1498	18	0	36	0	0	logfile
✔	8JPJ	36481	2025-05-14	2023-06-12	3.5	3.22	3.01	3.3	0.003	0.58	0.0	0.04	13.48	0.00	2.279	5.13	0.00	3.1	96.9	0.0	1.48	0.51	0.72	2.26	3.3	0.003	0.58	0.0	0.04	16.08	0.00	2.606	5.21	2.23	3.5	96.5	0.1	1.65	1.71	0.72	0.87	2.25	11448	1466	4	0	4	0	0	logfile

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