Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JPS	36488	2025-05-10	2023-06-12	3.65	2.65	2.29	3.7	0.003	0.69	0.0	0.04	12.41	0.00	2.310	9.82	0.43	6.8	93.2	0.0	-0.34	0.64	0.68	1.57	3.7	0.004	0.79	0.0	0.04	15.16	0.00	2.268	11.67	3.88	7.0	93.0	0.0	-0.41	0.50	0.64	0.69	1.25	4616	640	4	0	0	0	0	logfile
✔	8JPR	36487	2025-05-14	2023-06-12	3.4	3.63	3.40	3.7	0.003	0.56	0.0	0.04	13.51	0.00	2.111	6.61	0.00	2.2	97.8	0.0	1.04	0.69	0.82	2.53	3.6	0.004	0.59	0.0	0.04	15.34	0.00	2.071	6.12	1.21	2.9	97.1	0.0	1.99	1.06	0.67	0.88	1.70	11396	1460	4	0	8	0	0	logfile
✔	8T57	41044	2025-05-12	2023-06-12	2.7	2.45	2.64	3.0	0.027	1.65	0.0	0.12	11.19	0.01	2.385	1.27	0.00	0.8	99.2	0.0	0.77	0.80	0.82	4.03	3.0	0.003	0.59	0.0	0.04	14.25	0.00	2.590	6.74	1.44	1.6	98.4	0.0	2.29	0.58	0.77	0.83	2.80	8466	1008	4	0	20	0	0	logfile
✔	8JPN	36484	2025-05-11	2023-06-12	2.9	3.03	2.74	3.0	0.004	0.61	0.0	0.04	15.56	0.00	2.268	3.27	0.36	3.3	96.7	0.0	1.11	0.60	0.72	1.27	3.0	0.003	0.60	0.0	0.04	16.15	0.00	2.384	2.54	2.49	2.8	97.2	0.0	1.33	1.19	0.73	0.90	3.32	8557	1157	6	0	1	0	0	logfile
✔	8PDR	17619	2025-05-29	2023-06-12	4.0	4.33	4.07	4.1	0.006	0.61	0.0	0.04	14.93	0.00	0.603	14.55	0.00	1.2	98.8	0.0	0.34	0.63	0.53	—	4.1	0.004	0.71	0.0	0.04	17.10	0.00	2.208	11.89	1.91	2.0	98.0	0.0	1.30	1.85	0.75	0.73	—	32142	3938	33	77	0	0	0	logfile
✔	8PDS	17620	2025-05-10	2023-06-12	2.9	3.01	2.88	3.0	0.004	0.58	0.0	0.04	15.09	0.00	2.230	7.92	0.16	1.6	98.4	0.0	-0.16	0.68	0.83	3.17	3.0	0.004	0.59	0.0	0.04	17.00	0.00	2.475	6.84	2.84	1.5	98.5	0.0	0.71	0.39	0.68	0.85	2.51	6056	744	5	14	0	0	0	logfile
✔	8PCZ	17596	2025-05-17	2023-06-11	3.21	2.32	3.12	2.1	0.003	0.56	0.0	0.04	12.91	0.00	2.216	5.81	0.23	2.3	97.7	0.0	1.86	0.70	0.75	2.92	2.1	0.003	0.59	0.0	0.04	15.92	0.00	2.495	5.60	2.67	2.4	97.6	0.0	2.36	0.57	0.79	0.81	2.36	16176	2046	2	0	0	0	0	logfile
✔	8PD3	17599	2025-05-11	2023-06-11	3.3	2.29	3.23	2.1	0.003	0.56	0.0	0.04	13.67	0.00	2.227	4.23	0.00	1.3	98.7	0.0	0.70	0.61	0.78	2.84	2.1	0.004	0.54	0.0	0.04	15.56	0.00	2.556	4.95	2.15	2.0	98.0	0.0	2.35	0.49	0.67	0.82	2.14	8121	1028	1	0	0	0	0	logfile
✔	8JPD	36476	2025-05-10	2023-06-11	2.81	3.01	2.84	3.1	0.004	0.61	0.0	0.04	14.35	0.00	2.283	4.50	0.37	2.7	97.3	0.0	0.83	0.68	0.79	3.29	3.0	0.004	0.65	0.0	0.04	17.43	0.00	2.550	5.77	2.80	2.9	97.1	0.0	1.10	1.34	0.70	0.86	3.45	5198	658	2	0	1	0	0	logfile
✔	8PD7	17602	2025-05-11	2023-06-11	3.4	2.32	3.30	2.1	0.003	0.59	0.0	0.04	12.69	0.00	2.276	3.44	0.11	1.5	98.5	0.0	1.39	0.62	0.78	2.65	2.1	0.004	0.57	0.0	0.04	16.03	0.00	2.571	5.31	2.27	2.1	97.9	0.0	2.27	1.02	0.68	0.81	1.95	8121	1028	1	0	0	0	0	logfile
✔	8PD5	17601	2025-05-11	2023-06-11	3.4	2.30	3.32	2.1	0.003	0.53	0.0	0.04	13.12	0.00	2.148	2.18	0.00	2.2	97.8	0.0	1.83	0.61	0.77	2.43	2.1	0.003	0.52	0.0	0.04	15.84	0.00	2.599	3.94	2.62	1.6	98.4	0.0	2.32	0.99	0.68	0.81	2.58	8093	1024	1	0	0	0	0	logfile
✔	8PD2	17598	2025-05-11	2023-06-11	3.25	2.29	3.19	2.1	0.004	0.52	0.0	0.04	12.99	0.00	2.322	3.02	0.00	1.4	98.6	0.0	0.72	0.62	0.78	3.03	2.1	0.004	0.56	0.0	0.04	16.04	0.00	2.495	4.56	2.22	1.5	98.5	0.0	2.47	0.98	0.68	0.82	2.54	8270	1047	1	0	0	0	0	logfile
✔	8JPF	36478	2025-05-09	2023-06-11	3.02	3.21	3.40	3.3	0.008	0.81	0.0	0.04	18.98	0.00	2.214	5.45	0.46	2.7	97.3	0.0	2.25	0.48	0.75	2.58	3.3	0.003	0.67	0.0	0.04	17.66	0.00	2.460	6.58	1.83	3.0	97.0	0.0	1.84	0.91	0.45	0.78	2.31	2269	304	3	0	1	0	0	logfile
✔	8JP7	36470	2025-05-15	2023-06-10	3.51	3.68	3.53	3.6	0.005	0.64	0.0	0.05	17.39	0.00	1.606	5.68	0.62	4.3	95.7	0.0	-0.06	0.80	0.81	2.69	3.6	0.005	0.77	0.0	0.05	17.76	0.00	2.017	9.87	2.49	4.7	95.3	0.0	0.11	1.29	0.83	0.83	2.59	13476	1674	16	0	20	0	0	logfile
✔	8JP9	36472	2025-05-15	2023-06-10	3.37	3.55	3.41	3.5	0.003	0.51	0.0	0.04	16.11	0.00	1.666	2.44	0.14	2.9	97.1	0.0	-0.23	0.82	0.82	2.68	3.5	0.003	0.67	0.0	0.04	17.14	0.00	2.049	6.62	2.28	3.0	97.0	0.0	-0.11	1.61	0.83	0.84	2.23	13500	1678	16	0	20	0	0	logfile
✔	8JP8	36471	2025-05-15	2023-06-10	3.39	3.56	3.41	3.5	0.002	0.52	0.0	0.04	16.26	0.00	1.774	2.78	0.07	2.7	97.3	0.0	0.20	0.81	0.82	2.71	3.5	0.005	0.71	0.0	0.05	17.31	0.00	2.053	7.80	2.35	3.3	96.7	0.0	0.06	0.83	0.82	0.84	2.68	13500	1678	16	0	20	0	0	logfile
✔	8JP6	36469	2025-05-15	2023-06-10	3.29	3.43	3.30	3.3	0.003	0.60	0.0	0.05	16.63	0.00	1.720	4.45	0.14	3.8	96.2	0.0	0.12	0.82	0.85	3.09	3.4	0.003	0.69	0.0	0.04	17.68	0.00	2.081	6.81	2.84	4.2	95.8	0.0	0.09	0.59	0.83	0.86	2.79	13500	1678	16	0	20	0	0	logfile
✔	8JP5	36468	2025-05-15	2023-06-10	2.59	2.78	2.60	3.1	0.003	0.58	0.0	0.05	17.36	0.00	1.524	5.03	2.35	3.4	96.6	0.0	-0.20	0.73	0.77	2.58	3.0	0.003	0.66	0.0	0.05	18.01	0.00	2.053	6.66	3.67	2.8	97.2	0.0	0.41	0.51	0.74	0.80	2.98	13490	1676	16	0	20	0	0	logfile
✔	8T4H	41031	2025-05-11	2023-06-09	3.8	3.97	3.46	3.9	0.004	0.76	0.0	0.04	15.55	0.00	2.267	5.59	0.57	2.2	97.8	0.0	1.54	0.62	0.75	0.99	3.9	0.003	0.60	0.0	0.04	16.44	0.00	2.504	5.92	3.55	2.1	97.9	0.0	2.64	0.95	0.67	0.80	0.81	7702	1088	3	0	0	0	0	logfile
✔	8PC5	17594	2025-05-15	2023-06-09	3.02	3.37	3.06	3.0	0.006	0.79	0.0	0.06	29.26	0.01	2.205	7.09	0.42	1.9	98.1	0.0	1.05	0.90	0.86	3.01	3.0	0.004	0.60	0.0	0.03	27.72	0.00	2.320	5.62	0.84	2.6	97.4	0.0	2.46	1.95	0.93	0.91	2.49	12836	853	11	294	0	0	0	logfile

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