Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DSo	8910	2025-03-11	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.4	0.004	0.65	0.0	0.04	14.65	0.00	2.627	5.55	2.08	7.6	92.4	0.0	-4.39	0.62	0.49	0.83	5.41	6588	828	12	0	0	0	0	logfile
✔	6DMo	7964	2025-03-13	2018-06-05	4.1	4.16	—	4.1	0.008	1.27	0.0	0.06	13.72	0.01	1.764	8.90	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.004	0.86	0.0	0.05	13.43	0.00	2.539	12.53	0.00	9.9	90.1	0.0	-0.64	1.80	0.58	0.72	—	7853	982	3	0	7	0	0	logfile
✔	6DMB	7963	2025-03-13	2018-06-04	3.9	4.13	—	4.0	0.009	1.36	0.0	0.07	13.90	0.01	2.266	6.34	1.94	13.2	86.2	0.6	-4.55	0.61	0.78	2.39	4.0	0.005	0.93	0.0	0.05	15.52	0.01	2.429	13.13	4.73	13.8	86.1	0.1	-1.11	1.80	0.63	0.80	0.96	7945	990	3	0	9	0	0	logfile
✔	6DJP	7939	2025-03-12	2018-05-25	4.8	5.02	—	4.8	0.012	2.01	0.0	0.08	11.31	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.004	1.02	0.0	0.05	9.13	0.01	2.348	7.93	0.00	13.6	86.4	0.1	-3.67	1.19	0.81	0.75	—	7307	1393	16	0	23	0	0	logfile
✔	6DDF	7869	2025-03-12	2018-05-10	3.5	4.16	3.81	4.1	0.006	1.01	0.0	0.06	10.48	0.01	2.228	7.85	0.72	8.3	91.5	0.1	-4.62	0.72	0.72	2.22	4.1	0.003	0.72	0.0	0.04	15.58	0.00	2.457	10.69	4.29	5.5	94.5	0.0	-1.21	0.80	0.64	0.70	1.70	6808	890	7	0	2	0	0	logfile
✔	6DDE	7868	2025-03-13	2018-05-10	3.5	4.11	—	4.0	0.006	1.03	0.0	0.06	10.87	0.01	2.242	6.97	0.46	6.9	93.0	0.1	-3.56	0.72	0.74	2.43	4.0	0.004	0.78	0.0	0.04	15.32	0.00	2.508	12.98	4.27	4.8	95.2	0.0	-0.61	1.36	0.71	0.75	1.95	8489	1122	8	0	2	0	0	logfile
✔	6GGS	4399	2025-03-11	2018-05-03	3.94	3.85	—	3.8	0.006	1.15	0.0	0.07	14.10	0.00	2.060	14.46	1.27	4.8	95.2	0.0	-6.91	0.49	0.77	1.98	3.8	0.004	1.07	0.0	0.05	17.62	0.00	2.505	19.97	5.44	3.8	96.2	0.0	-3.23	3.52	0.51	0.78	1.94	6880	860	10	0	0	0	0	logfile
✔	6D9H	7835	2025-03-12	2018-04-29	3.6	3.82	—	3.8	0.006	0.93	0.0	0.06	9.57	0.01	2.219	4.18	0.00	3.4	96.6	0.0	-1.52	0.65	0.78	2.88	3.8	0.003	0.56	0.0	0.04	14.22	0.00	2.442	8.01	2.50	3.8	96.2	0.0	0.94	1.25	0.66	0.79	1.78	7023	892	5	0	1	0	0	logfile
✔	6D7W	7826	2025-03-13	2018-04-25	3.8	3.93	—	3.9	0.007	1.21	4.0	0.07	11.66	0.01	2.210	13.57	2.73	6.7	93.3	0.0	-3.65	0.58	0.77	1.57	3.8	0.005	0.77	0.0	0.05	15.73	0.00	2.214	10.61	5.05	7.1	92.9	0.0	-0.17	1.34	0.59	0.78	1.49	8946	1087	5	0	1	0	0	logfile
✔	6D7L	7823	2025-03-13	2018-04-25	4.0	4.10	3.93	3.9	0.004	0.86	0.0	0.05	7.65	0.01	2.273	4.18	0.00	8.5	91.5	0.0	-3.90	0.73	0.72	—	3.9	0.004	0.91	0.0	0.05	15.50	0.00	2.240	13.77	2.07	10.2	89.8	0.0	-0.53	3.00	0.76	0.75	—	9172	1152	4	0	0	0	0	logfile
✔	6GDG	4390	2025-03-12	2018-04-23	4.11	3.92	—	4.0	0.008	1.10	0.0	0.06	13.00	0.00	2.449	0.87	2.07	4.9	94.6	0.5	-3.15	0.76	0.78	—	4.0	0.003	0.69	0.0	0.04	12.82	0.00	2.521	10.97	0.00	2.9	97.1	0.0	0.04	0.85	0.77	0.75	—	7223	997	6	0	1	0	0	logfile
✔	6GCT	4386	2025-03-14	2018-04-19	3.85	3.94	3.81	3.9	0.012	1.40	0.0	0.07	14.50	0.01	2.330	6.80	5.57	5.8	93.9	0.2	-6.53	0.67	0.83	1.60	3.9	0.004	1.00	0.0	0.05	15.58	0.00	2.495	11.79	4.79	5.1	94.9	0.0	-2.09	1.27	0.65	0.82	1.76	9672	1299	6	0	0	0	0	logfile
✔	6D3R	7793	2025-03-12	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	11.89	0.01	2.385	0.57	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.5	0.003	0.65	0.0	0.04	12.74	0.00	2.560	6.22	0.00	2.7	97.3	0.0	2.75	1.22	0.68	0.77	—	7610	1127	2	0	2	0	0	logfile
✔	6G79	4358	2025-03-11	2018-04-05	3.78	3.99	—	4.0	0.008	1.15	0.0	0.06	12.12	0.01	2.442	0.69	0.56	4.9	94.6	0.5	-2.95	0.69	0.80	2.34	4.0	0.004	0.68	0.0	0.04	14.45	0.00	2.390	8.06	3.35	3.2	96.7	0.1	0.88	1.27	0.70	0.81	2.28	6053	860	5	0	1	0	0	logfile
✔	6CU7	7618	2025-03-05	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.004	0.71	0.0	0.05	14.39	0.00	2.570	14.91	5.24	12.9	87.1	0.0	-4.57	1.74	0.40	0.73	1.19	4140	600	10	0	0	0	0	logfile
✔	6CU8	7619	2025-03-05	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.3	0.004	0.72	0.0	0.06	12.15	0.00	2.549	9.61	3.55	8.5	91.5	0.0	-2.67	1.75	0.41	0.73	2.51	2880	410	10	0	0	0	0	logfile
✔	6CoY	7544	2025-03-12	2018-03-13	3.36	3.52	3.37	3.6	0.020	1.43	0.0	0.09	10.54	0.01	2.242	1.72	0.00	2.8	96.7	0.4	-0.30	0.70	0.86	2.95	3.6	0.004	0.60	0.0	0.04	13.89	0.01	2.613	5.09	2.62	2.8	97.2	0.0	2.85	1.15	0.58	0.82	1.95	7156	930	4	0	4	0	0	logfile
✔	6CoZ	7545	2025-03-05	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.5	0.003	0.79	0.0	0.04	4.68	0.00	2.622	0.88	0.00	4.2	95.8	0.0	-1.36	1.57	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	6CP7	7549	2025-03-13	2018-03-13	4.1	4.11	—	4.1	0.008	1.42	0.0	0.07	13.16	0.01	1.577	14.52	3.98	6.6	92.9	0.5	-4.99	0.50	0.68	—	4.0	0.004	0.94	0.0	0.05	12.63	0.00	2.461	16.01	0.00	3.9	96.1	0.0	-0.43	0.99	0.50	0.70	—	9164	1234	16	0	0	0	0	logfile
✔	6FU8	4319	2025-03-05	2018-02-26	3.2	4.43	1.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.75	0.0	0.04	15.74	0.00	2.454	10.26	1.39	10.0	88.8	1.2	-2.56	3.00	0.24	0.69	1.62	1364	82	1	0	0	0	711	logfile

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