Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T4F	41029	2025-05-11	2023-06-09	3.5	3.67	3.42	3.6	0.003	0.57	0.0	0.04	15.37	0.00	2.243	3.32	0.56	1.7	98.3	0.0	1.99	0.67	0.80	1.74	3.6	0.004	0.60	0.0	0.04	16.40	0.00	2.567	3.32	4.33	2.1	97.9	0.0	2.47	0.76	0.67	0.81	1.44	7793	1097	3	0	0	0	0	logfile
✔	8T4D	41027	2025-05-23	2023-06-09	3.1	3.36	3.15	3.4	0.006	1.03	0.0	0.06	11.14	0.01	2.005	1.39	0.23	2.3	97.7	0.0	0.96	0.71	0.82	4.05	3.3	0.005	0.68	0.0	0.05	13.31	0.00	2.258	7.14	1.93	3.4	96.6	0.0	0.83	0.62	0.71	0.85	3.83	24753	3060	33	0	63	0	0	logfile
✔	8T4G	41030	2025-05-11	2023-06-09	3.5	3.76	3.36	3.7	0.003	0.53	0.0	0.04	15.82	0.00	2.254	5.37	0.14	2.2	97.8	0.0	2.80	0.68	0.82	1.39	3.7	0.006	0.62	0.0	0.04	16.60	0.00	2.518	4.50	3.95	1.8	98.2	0.0	2.55	0.22	0.68	0.83	1.54	7721	1089	3	0	0	0	0	logfile
✘	8PBL	17586	2025-05-25	2023-06-09	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26261	3171	10	68	3	0	0	logfile
✔	8T4K	41034	2025-05-15	2023-06-09	2.6	2.78	2.58	2.8	0.007	1.12	0.0	0.07	13.19	0.01	1.281	1.04	0.62	0.9	98.9	0.2	0.97	0.68	0.84	5.26	2.8	0.003	0.65	0.0	0.05	15.05	0.00	2.546	4.72	2.34	1.4	98.6	0.0	1.17	0.38	0.71	0.86	4.74	13560	1638	12	0	39	0	0	logfile
✔	8T4H	41031	2025-05-11	2023-06-09	3.8	3.97	3.46	3.9	0.004	0.76	0.0	0.04	15.55	0.00	2.267	5.59	0.57	2.2	97.8	0.0	1.54	0.62	0.75	0.99	3.9	0.003	0.60	0.0	0.04	16.44	0.00	2.504	5.92	3.55	2.1	97.9	0.0	2.64	0.95	0.67	0.80	0.81	7702	1088	3	0	0	0	0	logfile
✘	8PBB	17583	2025-05-15	2023-06-09	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13334	1684	6	0	2	0	0	logfile
✔	8PC5	17594	2025-05-15	2023-06-09	3.02	3.37	3.06	3.0	0.006	0.79	0.0	0.06	29.26	0.01	2.205	7.09	0.42	1.9	98.1	0.0	1.05	0.90	0.86	3.01	3.0	0.004	0.60	0.0	0.03	27.72	0.00	2.320	5.62	0.84	2.6	97.4	0.0	2.46	1.95	0.93	0.91	2.49	12836	853	11	294	0	0	0	logfile
✔	8PC6	17595	2025-05-15	2023-06-09	3.04	3.48	3.06	3.1	0.004	0.68	0.0	0.04	28.54	0.01	2.142	7.87	0.13	2.2	97.8	0.0	0.83	0.89	0.83	2.36	3.1	0.006	0.62	0.0	0.04	27.45	0.00	2.203	7.46	0.63	2.8	97.2	0.0	1.76	1.34	0.93	0.92	2.91	13493	939	12	294	0	0	0	logfile
✔	8T4J	41033	2025-05-11	2023-06-09	3.9	4.16	3.61	4.0	0.002	0.60	0.0	0.04	13.69	0.00	2.275	5.11	0.28	1.8	98.2	0.0	0.48	0.65	0.79	0.89	4.0	0.003	0.63	0.0	0.04	15.51	0.00	2.433	6.37	3.66	1.1	98.9	0.0	1.43	1.31	0.67	0.80	0.66	7824	1107	3	0	0	0	0	logfile
✔	8T4L	41035	2025-05-23	2023-06-09	3.2	3.56	3.36	3.6	0.006	1.06	0.0	0.06	11.47	0.01	2.269	2.44	0.34	2.0	98.0	0.0	1.06	0.69	0.81	2.88	3.5	0.005	0.74	0.0	0.05	13.87	0.00	2.388	7.27	2.87	2.9	97.1	0.0	0.46	0.72	0.70	0.83	2.62	24375	3039	33	0	57	0	0	logfile
✔	8PBD	17585	2025-05-25	2023-06-09	2.83	3.29	3.26	3.3	0.007	0.52	0.0	0.04	15.39	0.00	2.152	5.21	1.92	6.2	93.5	0.3	-4.28	0.59	0.82	4.13	3.3	0.003	0.56	0.0	0.04	18.38	0.00	2.246	6.47	2.88	1.9	98.1	0.0	0.49	0.61	0.52	0.82	3.13	26366	3254	31	54	30	0	0	logfile
✔	8T4B	41026	2025-05-23	2023-06-08	3.5	3.85	3.47	3.7	0.007	1.12	0.0	0.07	13.17	0.01	2.227	1.08	0.34	2.8	97.2	0.0	0.88	0.80	0.84	3.37	3.7	0.005	0.72	0.0	0.05	13.54	0.00	2.498	5.43	1.30	3.7	96.3	0.0	0.08	0.48	0.82	0.86	3.04	24525	3039	30	0	69	0	0	logfile
✔	8T3Y	41016	2025-05-15	2023-06-08	3.47	3.65	3.21	3.4	0.008	0.73	0.0	0.04	26.54	0.00	2.284	6.78	1.74	2.8	97.2	0.0	-1.27	0.87	0.87	2.24	3.3	0.007	0.68	0.0	0.04	27.01	0.00	2.450	4.62	2.68	2.9	97.1	0.0	0.55	0.58	0.88	0.91	2.12	13001	886	14	292	4	0	0	logfile
✔	8T42	41018	2025-05-16	2023-06-08	3.6	2.51	3.44	2.2	0.007	1.11	0.0	0.05	16.00	0.01	1.998	3.82	0.13	4.2	95.8	0.0	-1.35	0.52	0.72	2.79	3.1	0.003	0.70	0.0	0.05	18.32	0.00	1.926	10.17	3.70	3.3	96.7	0.0	0.01	0.69	0.56	0.75	2.34	13854	1752	9	0	8	0	0	logfile
✔	8T4A	41025	2025-05-23	2023-06-08	3.4	3.78	3.46	3.6	0.007	1.29	0.0	0.06	13.27	0.01	2.243	1.16	0.23	2.1	97.9	0.0	1.29	0.79	0.82	3.26	3.6	0.003	0.70	0.0	0.04	13.33	0.00	2.309	6.15	1.25	3.6	96.4	0.0	0.65	0.56	0.82	0.88	2.65	24924	3057	33	0	81	0	0	logfile
✔	8PB1	17580	2025-05-10	2023-06-08	3.5	3.99	3.47	3.7	0.005	0.89	0.0	0.06	15.49	0.01	2.253	6.71	0.26	3.7	96.3	0.0	-0.98	0.75	0.78	2.11	3.7	0.005	0.72	0.0	0.04	15.54	0.00	2.405	8.54	1.98	5.2	94.8	0.0	-0.44	0.91	0.76	0.80	2.02	6652	829	8	0	8	1	0	logfile
✔	8T49	41024	2025-05-23	2023-06-08	3.2	3.49	3.22	3.4	0.007	1.20	0.0	0.07	14.06	0.01	2.187	1.53	0.57	2.1	97.9	0.0	1.03	0.80	0.85	3.95	3.4	0.004	0.78	1.0	0.05	13.77	0.00	2.378	6.23	2.13	3.3	96.7	0.0	0.28	0.52	0.81	0.88	2.95	24939	3045	36	0	96	0	0	logfile
✔	8T46	41021	2025-05-11	2023-06-08	3.6	3.90	3.36	3.8	0.003	0.63	0.0	0.04	16.79	0.01	2.278	4.95	0.28	2.1	97.8	0.1	1.31	0.66	0.80	1.19	3.8	0.003	0.53	0.0	0.04	17.25	0.00	2.586	4.81	4.90	1.8	98.2	0.0	2.87	1.92	0.69	0.82	1.22	7885	1113	2	0	0	0	0	logfile
✔	8PBA	17582	2025-05-22	2023-06-08	2.64	3.15	2.72	2.8	0.017	1.31	0.0	0.07	11.77	0.01	2.460	0.70	0.32	1.0	99.0	0.0	0.95	0.87	0.80	4.56	2.8	0.003	0.60	0.0	0.04	14.87	0.00	2.184	5.10	0.88	2.5	97.4	0.1	0.07	1.21	0.87	0.83	3.67	22964	1444	2	0	0	0	11332	logfile

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