Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T3T	41011	2025-05-15	2023-06-07	3.21	3.55	3.10	3.3	0.004	0.61	0.0	0.04	27.44	0.00	2.202	7.81	0.27	2.9	97.1	0.0	0.21	0.89	0.91	2.14	3.3	0.003	0.61	0.0	0.03	27.39	0.00	2.503	5.22	2.82	3.1	96.9	0.0	1.29	0.26	0.89	0.92	1.65	12991	885	14	292	4	0	0	logfile
✔	8T3K	41004	2025-05-21	2023-06-07	3.33	2.44	3.36	3.1	0.008	1.06	0.0	0.05	20.31	0.01	2.225	7.61	0.20	7.2	92.8	0.0	-1.55	0.72	0.67	1.36	3.1	0.003	0.55	0.0	0.04	19.46	0.00	2.352	8.39	2.25	7.3	92.7	0.0	-0.64	0.43	0.74	0.72	1.05	19768	1204	4	0	15	0	9730	logfile
✔	8T3S	41010	2025-05-12	2023-06-07	3.07	3.44	3.18	3.4	0.005	0.75	1.0	0.05	15.22	0.00	2.185	9.29	0.53	2.5	97.5	0.0	0.78	0.63	0.85	2.72	3.4	0.005	0.58	0.0	0.04	15.56	0.00	2.325	7.97	4.06	2.1	97.9	0.0	1.39	0.91	0.61	0.86	2.85	8769	1119	6	0	4	0	0	logfile
✔	8T3V	41013	2025-05-12	2023-06-07	3.39	3.88	3.54	3.9	0.005	0.81	0.0	0.05	15.86	0.01	2.175	11.45	0.44	2.6	97.4	0.0	0.38	0.52	0.64	0.69	3.8	0.003	0.64	0.0	0.04	16.73	0.00	2.507	7.40	3.71	2.7	97.3	0.0	0.92	0.76	0.58	0.82	1.87	8742	1136	6	0	2	0	0	logfile
✔	8Jo3	36454	2025-05-10	2023-06-07	2.66	2.82	2.65	2.8	0.003	0.53	0.0	0.04	18.82	0.00	2.196	9.66	2.56	1.4	98.6	0.0	1.75	0.70	0.82	3.43	2.8	0.004	0.56	0.0	0.04	18.55	0.00	2.334	6.50	2.88	1.6	98.4	0.0	1.63	0.23	0.70	0.82	3.82	5715	709	4	0	3	0	0	logfile
✔	8Jo4	36455	2025-05-10	2023-06-07	3.04	3.24	3.06	3.2	0.004	0.59	0.0	0.05	13.29	0.00	2.202	9.05	3.21	2.0	97.9	0.1	1.06	0.71	0.78	3.68	3.2	0.003	0.53	0.0	0.04	16.03	0.00	2.406	10.10	2.25	1.7	98.3	0.0	1.83	0.49	0.69	0.77	3.17	5719	709	4	0	4	0	0	logfile
✔	8T3Q	41008	2025-05-12	2023-06-07	3.14	3.59	3.25	3.6	0.008	1.15	2.0	0.07	14.66	0.01	2.144	11.89	1.75	4.3	95.6	0.1	-1.14	0.45	0.67	2.95	3.6	0.004	0.63	0.0	0.04	15.71	0.00	2.540	7.78	2.98	4.2	95.8	0.0	0.13	0.97	0.53	0.77	2.67	9035	1159	6	0	1	0	0	logfile
✔	8T3W	41015	2025-05-15	2023-06-07	3.25	3.53	3.11	3.3	0.008	0.73	0.0	0.04	26.53	0.00	2.284	6.74	1.74	2.8	97.2	0.0	-1.27	0.88	0.88	2.25	3.3	0.004	0.66	0.0	0.04	27.19	0.00	2.472	4.32	2.41	2.0	98.0	0.0	0.53	0.54	0.90	0.92	2.27	13001	886	14	292	4	0	0	logfile
✔	8JoL	36459	2025-05-12	2023-06-07	3.0	3.98	2.97	3.4	0.009	1.46	0.0	0.07	18.20	0.01	2.214	35.79	16.43	12.3	86.8	0.8	-4.77	0.56	0.70	0.79	3.4	0.003	0.84	0.0	0.04	16.60	0.00	1.979	8.57	1.65	3.8	96.2	0.0	0.73	1.50	0.62	0.88	1.43	8513	1087	5	0	4	0	0	logfile
✔	8T2S	40986	2025-05-16	2023-06-06	3.0	3.20	3.02	3.2	0.004	0.89	0.0	0.04	24.68	0.01	2.251	3.85	2.04	2.9	97.1	0.0	-2.71	0.64	0.82	3.11	3.2	0.005	0.66	0.0	0.04	24.25	0.00	2.096	6.99	5.54	6.0	94.0	0.0	-0.19	0.34	0.70	0.87	2.91	14998	389	3	551	13	0	0	logfile
✔	8JNS	36450	2025-05-23	2023-06-06	4.2	5.01	4.21	3.5	0.010	1.52	0.0	0.08	18.70	0.01	1.390	39.59	17.81	12.8	86.4	0.8	-4.88	0.88	0.76	—	3.5	0.003	0.72	0.0	0.04	13.76	0.00	1.940	9.04	0.00	4.3	95.7	0.0	0.66	1.21	0.91	0.85	—	24168	2985	15	0	12	0	0	logfile
✔	8JNJ	36449	2025-05-14	2023-06-06	3.3	3.66	3.36	3.6	0.004	0.49	0.0	0.04	10.55	0.00	2.292	7.26	1.45	1.6	98.4	0.0	-0.38	0.63	0.84	3.60	3.6	0.003	0.54	0.0	0.04	13.91	0.00	2.565	7.38	2.01	1.9	98.1	0.0	1.60	0.94	0.58	0.84	2.36	11736	1516	2	0	0	0	0	logfile
✔	8T2T	40987	2025-05-16	2023-06-06	3.0	3.39	3.19	9.5	0.006	0.97	0.0	0.05	24.84	0.01	1.982	4.25	0.00	4.5	95.0	0.5	-1.78	0.45	0.06	0.14	3.0	0.007	1.16	0.0	0.05	26.70	0.01	0.924	28.81	3.52	7.6	92.4	0.0	-2.46	2.59	0.75	0.71	1.88	14876	387	5	546	12	0	0	logfile
✔	8T2V	40989	2025-05-15	2023-06-06	3.4	4.28	3.49	3.7	0.016	1.97	1.0	0.10	20.17	0.01	1.751	11.21	5.50	9.1	90.0	1.0	-1.99	0.91	0.84	2.12	3.7	0.003	0.74	0.0	0.05	16.69	0.00	1.963	7.77	2.40	6.0	93.8	0.2	-0.69	1.15	0.91	0.84	2.40	13134	1664	10	0	34	6	0	logfile
✔	8P9Y	17578	2025-05-25	2023-06-06	4.3	3.62	4.34	4.3	0.018	1.74	8.0	0.12	14.42	0.01	1.112	59.14	7.52	4.0	95.5	0.5	-0.03	0.70	0.63	—	4.3	0.004	0.87	0.0	0.05	13.08	0.01	1.413	15.98	0.07	5.5	94.4	0.0	-1.02	1.34	0.70	0.70	—	25937	3237	16	0	48	0	0	logfile
✔	8Jo0	36451	2025-05-25	2023-06-06	3.6	4.68	3.46	3.5	0.009	1.48	1.0	0.08	21.29	0.01	1.813	62.06	27.27	13.8	84.7	1.5	-4.82	0.84	0.71	0.75	3.7	0.003	0.82	0.0	0.04	17.10	0.00	1.875	11.33	3.02	4.1	95.8	0.1	0.20	3.15	0.88	0.84	1.27	27362	3382	20	0	14	0	0	logfile
✔	8JN4	36432	2025-05-27	2023-06-06	3.5	3.48	2.62	3.5	0.004	0.75	0.0	0.05	15.96	0.00	2.113	11.44	0.00	4.0	96.0	0.0	-1.28	0.54	0.82	1.74	3.4	0.006	0.75	0.0	0.05	16.25	0.00	2.391	10.52	5.15	4.8	95.2	0.0	-1.13	0.70	0.55	0.84	1.84	30226	3878	28	0	42	0	0	logfile
✔	8JND	36442	2025-05-28	2023-06-06	3.66	4.95	3.55	4.6	0.006	0.80	0.0	0.05	21.26	0.01	2.205	12.97	0.04	0.9	99.1	0.0	-0.34	0.88	0.79	0.77	4.6	0.003	0.62	0.0	0.04	21.92	0.00	2.513	10.74	1.23	0.7	99.3	0.0	1.56	0.74	0.88	0.79	0.53	30404	3115	19	309	0	0	0	logfile
✔	8JN5	36433	2025-05-27	2023-06-06	3.6	3.46	2.67	3.6	0.004	0.77	0.0	0.05	16.43	0.00	2.130	11.30	0.00	4.7	95.3	0.0	-1.68	0.51	0.79	1.77	3.4	0.003	0.79	0.0	0.04	17.16	0.00	2.382	11.18	4.75	5.2	94.8	0.0	-1.32	1.87	0.50	0.81	1.49	30204	3878	28	0	40	0	0	logfile
✔	8JN2	36430	2025-05-27	2023-06-06	4.1	4.23	3.96	4.2	0.005	0.77	0.0	0.05	15.80	0.00	2.089	14.33	0.00	6.8	93.2	0.0	-1.72	0.50	0.84	—	4.2	0.005	0.81	0.0	0.05	13.89	0.00	2.348	13.38	0.03	7.1	92.9	0.0	-1.67	0.60	0.50	0.84	—	29988	3870	28	0	32	0	0	logfile

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