Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T2R	40985	2025-05-16	2023-06-06	3.1	3.34	3.14	3.3	0.006	0.96	0.0	0.05	25.03	0.01	2.174	4.24	1.15	3.1	96.3	0.5	-2.13	0.68	0.83	2.96	3.3	0.004	0.63	0.0	0.03	24.49	0.00	2.153	8.02	4.03	3.4	96.1	0.5	1.18	0.38	0.75	0.86	2.94	15063	388	4	552	15	0	0	logfile
✔	8JND	36442	2025-05-28	2023-06-06	3.66	4.95	3.55	4.6	0.006	0.80	0.0	0.05	21.26	0.01	2.205	12.97	0.04	0.9	99.1	0.0	-0.34	0.88	0.79	0.77	4.6	0.003	0.62	0.0	0.04	21.92	0.00	2.513	10.74	1.23	0.7	99.3	0.0	1.56	0.74	0.88	0.79	0.53	30404	3115	19	309	0	0	0	logfile
✔	8JNS	36450	2025-05-23	2023-06-06	4.2	5.01	4.21	3.5	0.010	1.52	0.0	0.08	18.70	0.01	1.390	39.59	17.81	12.8	86.4	0.8	-4.88	0.88	0.76	—	3.5	0.003	0.72	0.0	0.04	13.76	0.00	1.940	9.04	0.00	4.3	95.7	0.0	0.66	1.21	0.91	0.85	—	24168	2985	15	0	12	0	0	logfile
✔	8JMT	36426	2025-05-09	2023-06-05	3.3	3.55	3.40	3.7	0.003	0.75	0.0	0.04	14.38	0.00	2.204	8.56	0.00	3.5	96.5	0.0	-0.01	0.35	0.59	1.38	3.7	0.004	0.60	0.0	0.04	16.50	0.00	2.630	9.60	1.97	3.5	96.5	0.0	1.62	1.17	0.33	0.61	0.88	1894	234	1	0	0	0	0	logfile
✔	8T21	40977	2025-05-23	2023-06-05	3.6	4.01	3.76	3.9	0.005	1.04	1.0	0.05	16.99	0.01	1.943	23.91	0.34	11.6	88.0	0.3	-2.22	0.69	0.72	0.85	3.9	0.004	0.88	0.0	0.05	17.34	0.01	2.293	15.00	3.46	9.9	89.8	0.3	-1.90	0.81	0.73	0.77	1.30	23430	3003	3	0	0	0	0	logfile
✔	8T23	40979	2025-05-10	2023-06-05	3.87	4.12	4.18	7.5	0.005	1.03	0.0	0.05	19.22	0.01	2.136	16.85	0.59	11.9	88.1	0.0	-3.06	0.59	0.48	0.19	7.5	0.003	0.84	0.0	0.05	18.34	0.01	2.485	15.73	3.95	10.6	89.4	0.0	-2.34	0.89	0.62	0.55	0.19	6451	781	6	0	6	0	0	logfile
✔	8T25	40980	2025-05-14	2023-06-05	3.62	3.81	3.60	3.8	0.003	0.63	0.0	0.04	18.09	0.01	2.200	10.48	0.44	4.0	96.0	0.0	-0.27	0.62	0.60	0.80	3.8	0.003	0.64	0.0	0.04	18.49	0.00	2.557	8.40	5.09	5.0	95.0	0.0	-0.41	0.35	0.64	0.62	0.81	6408	787	2	0	0	0	0	logfile
✔	8T22	40978	2025-05-27	2023-06-05	3.83	4.31	3.98	4.0	0.008	1.38	11.0	0.06	17.91	0.01	1.654	35.98	0.22	13.2	86.5	0.4	-2.97	0.74	0.72	0.66	3.9	0.004	1.01	2.0	0.05	18.02	0.01	2.179	18.85	4.27	12.3	87.5	0.1	-2.23	1.45	0.74	0.74	0.72	23961	3046	4	0	0	0	0	logfile
✔	8T2E	40981	2025-05-17	2023-06-05	3.5	3.64	3.45	3.6	0.023	1.69	0.0	0.14	11.27	0.01	2.373	0.73	0.14	1.8	98.1	0.1	0.66	0.63	0.82	3.24	3.6	0.002	0.63	0.0	0.04	13.96	0.00	2.427	5.23	1.99	2.1	97.9	0.0	0.71	1.92	0.58	0.81	2.37	15021	1632	20	0	295	0	0	logfile
✔	8P99	17576	2025-05-24	2023-06-05	3.4	2.53	3.37	2.2	0.017	1.70	11.0	0.11	14.99	0.01	1.154	60.68	8.63	3.7	95.8	0.5	0.79	0.75	0.71	1.41	2.2	0.006	0.92	2.0	0.05	15.73	0.01	2.005	11.30	4.58	3.5	96.4	0.1	-0.12	0.69	0.75	0.77	1.65	25713	3219	16	0	44	0	0	logfile
✔	8T20	40976	2025-05-29	2023-06-05	3.36	3.67	3.57	3.7	0.007	1.06	0.0	0.06	18.41	0.01	1.836	25.57	0.67	12.9	86.9	0.2	-2.81	0.53	0.49	0.09	3.7	0.006	1.00	1.0	0.05	18.45	0.01	2.048	20.51	3.75	11.2	88.8	0.0	-2.27	1.03	0.64	0.71	1.54	32612	4117	5	0	0	0	0	logfile
✔	8T2F	40982	2025-05-26	2023-06-05	3.8	3.94	3.80	3.9	0.022	1.71	0.0	0.14	11.36	0.01	2.195	0.78	0.22	2.7	97.3	0.0	0.47	0.55	0.75	2.58	3.9	0.003	0.64	0.0	0.04	14.07	0.00	2.297	6.06	2.48	5.2	94.8	0.0	-0.30	1.03	0.53	0.76	2.10	26110	1541	19	0	277	0	12013	logfile
✔	8JME	36417	2025-05-25	2023-06-04	2.5	2.52	2.53	2.6	0.003	0.50	0.0	0.03	16.25	0.01	1.998	3.06	0.27	3.2	96.8	0.0	2.95	0.62	0.80	3.00	2.6	0.003	0.54	0.0	0.04	16.38	0.01	2.451	3.64	1.56	2.3	97.7	0.0	2.89	0.31	0.61	0.81	3.35	27164	1628	4	0	0	0	13812	logfile
✔	8JMi	36422	2025-05-25	2023-06-04	2.6	2.27	2.41	2.6	0.004	0.55	0.0	0.03	15.88	0.00	2.100	5.96	0.88	2.8	97.2	0.0	2.54	0.64	0.82	3.01	2.6	0.003	0.51	0.0	0.04	16.02	0.00	2.425	4.24	0.54	2.2	97.8	0.0	2.90	0.32	0.64	0.82	3.22	27256	1628	8	0	8	0	13812	logfile
✔	8JMA	36411	2025-05-23	2023-06-04	2.5	2.43	2.53	2.6	0.004	0.51	0.0	0.04	16.39	0.00	2.210	4.35	0.61	1.3	98.7	0.0	3.05	0.61	0.81	3.53	2.6	0.003	0.47	0.0	0.03	16.51	0.00	2.281	2.32	0.91	1.9	98.1	0.0	3.59	0.24	0.60	0.81	3.48	24568	1524	8	0	4	0	12472	logfile
✔	8JM9	36410	2025-05-23	2023-06-04	2.6	2.53	2.63	2.8	0.003	0.47	0.0	0.03	15.46	0.00	2.099	5.71	0.61	1.3	98.7	0.0	3.59	0.45	0.69	2.96	2.8	0.005	0.51	0.0	0.04	15.78	0.00	2.457	2.85	1.90	2.1	97.9	0.0	2.85	0.39	0.57	0.80	3.22	24520	1524	4	0	0	0	12472	logfile
✔	8JMH	36421	2025-05-25	2023-06-04	2.5	2.95	2.48	2.8	0.007	0.57	0.0	0.05	15.01	0.00	2.118	2.82	0.07	2.6	97.4	0.0	3.05	0.64	0.82	3.38	2.8	0.002	0.51	0.0	0.05	14.79	0.00	2.518	2.30	0.27	2.2	97.8	0.0	3.06	0.33	0.62	0.81	3.01	27256	1628	8	0	8	0	13812	logfile
✔	8JLZ	36409	2025-05-11	2023-06-04	3.09	2.32	3.33	2.1	0.005	0.71	0.0	0.04	13.33	0.01	2.170	6.28	0.12	3.7	96.3	0.0	-0.56	0.78	0.77	2.77	2.1	0.003	0.55	0.0	0.04	15.44	0.00	2.525	3.92	2.35	2.2	97.8	0.0	0.95	0.37	0.79	0.79	2.22	7730	1015	6	0	1	0	0	logfile
✔	8JLW	36406	2025-05-09	2023-06-03	3.0	3.23	2.88	3.2	0.005	0.70	0.0	0.04	14.61	0.01	2.255	11.03	0.00	9.3	90.7	0.0	-1.71	0.58	0.71	4.14	3.2	0.003	0.69	0.0	0.04	17.06	0.00	2.460	8.39	0.86	8.5	91.5	0.0	-1.42	1.03	0.55	0.71	3.64	2157	280	3	0	0	0	0	logfile
✔	8JLX	36407	2025-05-09	2023-06-03	3.0	3.13	2.80	3.1	0.004	0.75	0.0	0.05	14.32	0.01	2.247	12.73	0.00	11.9	88.1	0.0	-2.27	0.54	0.71	2.31	3.1	0.004	0.74	0.0	0.05	17.21	0.00	2.489	7.50	5.10	8.8	91.2	0.0	-2.13	0.39	0.53	0.73	2.30	2277	293	3	0	0	0	0	logfile

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