Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JLE	36394	2025-05-10	2023-06-02	2.82	2.99	2.86	3.0	0.011	1.43	0.0	0.10	12.34	0.01	2.204	13.50	0.00	5.3	94.5	0.2	-0.99	0.49	0.77	3.45	3.0	0.004	0.65	0.0	0.05	15.36	0.00	2.531	7.32	4.32	5.0	95.0	0.0	-0.41	1.08	0.62	0.86	3.74	4408	528	4	0	5	0	0	logfile
✔	8JLR	36405	2025-05-12	2023-06-02	3.0	3.35	3.13	3.3	0.003	0.61	0.0	0.04	14.18	0.00	2.200	15.48	0.21	4.3	95.7	0.0	-0.20	0.64	0.75	2.21	3.3	0.003	0.64	0.0	0.04	16.33	0.00	2.539	11.69	1.95	4.9	95.1	0.0	-0.04	0.46	0.62	0.78	1.98	8934	1130	6	0	1	0	0	logfile
✔	8JLC	36392	2025-05-11	2023-06-02	2.88	3.12	2.97	3.2	0.011	1.28	0.0	0.09	13.04	0.01	2.195	10.44	0.00	3.7	96.3	0.0	-0.12	0.48	0.74	2.44	3.2	0.003	0.60	0.0	0.04	15.52	0.00	2.387	5.47	2.28	3.4	96.6	0.0	0.94	1.05	0.56	0.81	2.26	8189	1012	4	0	6	0	0	logfile
✔	8JLF	36395	2025-05-11	2023-06-02	3.01	3.25	3.07	3.3	0.011	1.11	0.0	0.08	13.11	0.01	2.246	8.30	0.00	3.3	96.7	0.0	-0.19	0.50	0.76	2.96	3.3	0.003	0.51	0.0	0.04	14.64	0.00	2.603	7.25	1.48	2.6	97.4	0.0	0.87	0.97	0.55	0.81	2.69	8177	1012	4	0	5	0	0	logfile
✔	8JLK	36400	2025-05-12	2023-06-02	3.22	3.56	3.28	3.6	0.005	0.84	0.0	0.05	14.64	0.01	2.213	11.02	0.95	6.2	93.8	0.0	-0.94	0.61	0.67	0.98	3.5	0.003	0.67	0.0	0.04	16.53	0.00	2.492	5.17	2.21	4.1	95.9	0.0	0.37	1.07	0.66	0.78	1.71	8824	1129	6	0	1	0	0	logfile
✔	8JLG	36396	2025-05-10	2023-06-02	2.87	3.10	2.94	3.1	0.011	1.13	0.0	0.08	13.81	0.01	2.213	8.78	0.00	4.7	95.3	0.0	-1.01	0.54	0.83	4.44	3.1	0.003	0.55	0.0	0.05	15.69	0.00	2.493	5.93	2.87	3.8	96.2	0.0	-0.63	0.92	0.59	0.85	3.97	4426	531	4	0	5	0	0	logfile
✔	8JLi	36398	2025-05-12	2023-06-02	3.38	3.66	3.39	3.7	0.008	1.00	1.0	0.06	12.67	0.01	2.021	10.57	0.00	2.9	97.1	0.0	0.78	0.51	0.70	0.97	3.6	0.003	0.61	0.0	0.04	16.33	0.00	2.595	5.94	2.45	3.2	96.8	0.0	1.64	1.18	0.56	0.73	0.86	9248	1172	4	0	2	0	0	logfile
✔	8JLo	36402	2025-05-11	2023-06-02	3.52	3.78	3.53	3.7	0.003	0.69	0.0	0.04	14.26	0.00	2.257	7.12	0.25	4.5	95.5	0.0	-0.64	0.59	0.79	2.09	3.7	0.003	0.96	0.0	0.04	16.32	0.00	1.565	5.75	1.88	4.3	95.6	0.1	0.21	0.40	0.65	0.82	1.82	7343	922	5	0	1	0	0	logfile
✔	8JL3	36387	2025-05-12	2023-06-02	2.59	2.77	2.59	2.8	0.006	0.64	0.0	0.04	15.27	0.01	2.231	4.60	0.00	1.3	98.7	0.0	1.16	0.70	0.89	4.64	2.8	0.003	0.53	0.0	0.04	15.91	0.00	2.610	3.69	1.86	1.2	98.8	0.0	2.28	0.25	0.69	0.88	3.93	9408	1054	8	0	82	0	0	logfile
✔	8JKV	36376	2025-05-12	2023-06-02	2.87	3.16	2.86	3.2	0.007	0.67	0.0	0.05	15.12	0.00	2.253	5.12	0.00	2.3	97.7	0.0	0.73	0.65	0.85	4.23	3.2	0.003	0.51	0.0	0.04	14.47	0.00	2.621	4.40	0.88	1.3	98.7	0.0	1.95	0.86	0.64	0.85	3.89	9266	1054	8	0	76	0	0	logfile
✔	8JLA	36390	2025-05-14	2023-06-02	3.44	2.77	3.39	3.0	0.006	0.88	0.0	0.05	28.21	0.01	1.607	3.59	0.16	1.4	98.6	0.0	0.68	0.78	0.82	1.24	2.9	0.004	0.59	0.0	0.03	28.17	0.00	2.380	6.54	3.55	1.2	98.8	0.0	3.42	0.58	0.82	0.85	1.34	12314	748	10	312	0	0	0	logfile
✔	8JL0	36385	2025-05-13	2023-06-02	3.1	2.70	3.09	3.1	0.008	0.73	0.0	0.05	20.61	0.01	2.233	8.69	0.79	8.3	91.3	0.4	-1.51	0.77	0.85	2.48	3.1	0.004	0.58	0.0	0.04	20.48	0.00	2.489	6.51	3.94	7.4	92.5	0.1	-0.74	0.25	0.76	0.86	2.59	9244	1042	5	44	1	0	0	logfile
✔	8JLQ	36404	2025-05-12	2023-06-02	2.84	3.01	2.88	3.1	0.005	0.78	1.0	0.05	13.14	0.00	2.203	18.53	0.41	4.0	96.0	0.0	-0.45	0.59	0.69	2.82	3.0	0.005	1.02	1.0	0.05	15.91	0.00	2.050	17.53	2.34	4.3	95.7	0.0	0.17	0.49	0.59	0.74	2.10	9033	1140	6	0	1	0	0	logfile
✔	8JLB	36391	2025-05-14	2023-06-02	2.36	2.12	2.25	2.5	0.004	0.69	0.0	0.04	29.91	0.01	1.988	3.26	0.16	1.5	98.5	0.0	0.69	0.76	0.85	3.59	1.7	0.004	0.57	0.0	0.03	28.08	0.00	2.188	4.12	1.95	1.0	99.0	0.0	3.30	1.53	0.76	0.85	3.33	11844	746	10	290	0	0	0	logfile
✔	8JLJ	36399	2025-05-12	2023-06-02	3.1	2.95	2.70	3.0	0.008	1.00	3.0	0.06	13.60	0.01	2.256	8.09	0.82	3.9	96.1	0.0	-0.40	0.65	0.81	3.07	3.0	0.002	0.58	0.0	0.04	15.95	0.00	2.544	3.22	1.96	3.9	96.1	0.0	0.86	1.02	0.70	0.87	3.28	8918	1132	6	0	1	0	0	logfile
✔	8JKZ	36384	2025-05-12	2023-06-02	3.6	3.43	3.51	3.4	0.007	0.74	0.0	0.04	17.97	0.00	2.219	10.00	1.00	10.0	89.9	0.1	-1.21	0.72	0.84	2.29	3.4	0.005	0.64	0.0	0.04	17.90	0.00	2.467	8.34	3.10	11.0	89.0	0.0	-0.78	0.39	0.75	0.85	1.97	8444	1053	3	0	1	0	0	logfile
✔	8T18	40957	2025-05-24	2023-06-02	2.6	2.77	2.63	2.8	0.013	1.91	0.0	0.09	13.01	0.01	2.568	0.00	0.00	3.1	96.9	0.0	0.37	0.63	0.78	5.58	2.8	0.003	0.64	0.0	0.04	16.46	0.00	2.380	1.10	3.33	3.6	96.4	0.0	0.55	0.70	0.64	0.79	5.57	25356	1620	12	0	0	0	12420	logfile
✔	8T1J	40969	2025-05-11	2023-06-02	2.7	2.99	2.81	3.0	0.015	1.48	0.0	0.07	12.84	0.01	2.502	0.95	0.00	2.4	97.6	0.0	0.15	0.76	0.80	4.27	3.0	0.003	0.62	0.0	0.04	16.57	0.00	2.542	4.81	2.26	2.0	98.0	0.0	1.17	0.64	0.72	0.83	4.00	6973	840	5	0	5	0	0	logfile
✔	8T17	40956	2025-05-27	2023-06-02	2.6	2.79	2.62	2.8	0.013	1.88	0.0	0.08	12.07	0.01	2.585	2.10	0.00	3.0	97.0	0.0	0.46	0.66	0.83	6.03	2.8	0.003	0.62	0.0	0.04	15.44	0.01	2.451	1.29	0.99	1.2	98.8	0.0	1.32	1.42	0.70	0.85	5.15	29554	1890	14	0	0	0	14462	logfile
✔	8T1F	40962	2025-05-21	2023-06-02	3.49	3.75	3.59	3.7	0.006	1.32	0.0	0.06	13.75	0.01	2.171	4.71	0.85	11.6	87.7	0.6	-5.59	0.62	0.82	3.07	3.7	0.004	0.83	0.0	0.04	15.84	0.00	2.359	9.32	2.77	10.5	89.2	0.4	-1.65	1.14	0.69	0.86	2.37	20790	2542	8	0	8	0	0	logfile

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