Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T1J	40969	2025-05-11	2023-06-02	2.7	2.99	2.81	3.0	0.015	1.48	0.0	0.07	12.84	0.01	2.502	0.95	0.00	2.4	97.6	0.0	0.15	0.76	0.80	4.27	3.0	0.003	0.62	0.0	0.04	16.57	0.00	2.542	4.81	2.26	2.0	98.0	0.0	1.17	0.64	0.72	0.83	4.00	6973	840	5	0	5	0	0	logfile
✔	8JLA	36390	2025-05-14	2023-06-02	3.44	2.77	3.39	3.0	0.006	0.88	0.0	0.05	28.21	0.01	1.607	3.59	0.16	1.4	98.6	0.0	0.68	0.78	0.82	1.24	2.9	0.004	0.59	0.0	0.03	28.17	0.00	2.380	6.54	3.55	1.2	98.8	0.0	3.42	0.58	0.82	0.85	1.34	12314	748	10	312	0	0	0	logfile
✔	8JKZ	36384	2025-05-12	2023-06-02	3.6	3.43	3.51	3.4	0.007	0.74	0.0	0.04	17.97	0.00	2.219	10.00	1.00	10.0	89.9	0.1	-1.21	0.72	0.84	2.29	3.4	0.005	0.64	0.0	0.04	17.90	0.00	2.467	8.34	3.10	11.0	89.0	0.0	-0.78	0.39	0.75	0.85	1.97	8444	1053	3	0	1	0	0	logfile
✔	8JL1	36386	2025-05-12	2023-06-02	2.8	3.06	2.80	3.1	0.007	0.62	0.0	0.04	15.09	0.00	2.226	4.15	0.00	2.4	97.6	0.0	1.13	0.68	0.89	4.20	3.1	0.003	0.48	0.0	0.04	15.04	0.00	2.464	4.46	1.42	1.7	98.3	0.0	2.52	0.24	0.63	0.87	3.86	9384	1054	8	0	80	0	0	logfile
✔	8JLF	36395	2025-05-11	2023-06-02	3.01	3.25	3.07	3.3	0.011	1.11	0.0	0.08	13.11	0.01	2.246	8.30	0.00	3.3	96.7	0.0	-0.19	0.50	0.76	2.96	3.3	0.003	0.51	0.0	0.04	14.64	0.00	2.603	7.25	1.48	2.6	97.4	0.0	0.87	0.97	0.55	0.81	2.69	8177	1012	4	0	5	0	0	logfile
✔	8JLG	36396	2025-05-10	2023-06-02	2.87	3.10	2.94	3.1	0.011	1.13	0.0	0.08	13.81	0.01	2.213	8.78	0.00	4.7	95.3	0.0	-1.01	0.54	0.83	4.44	3.1	0.003	0.55	0.0	0.05	15.69	0.00	2.493	5.93	2.87	3.8	96.2	0.0	-0.63	0.92	0.59	0.85	3.97	4426	531	4	0	5	0	0	logfile
✔	8JKV	36376	2025-05-12	2023-06-02	2.87	3.16	2.86	3.2	0.007	0.67	0.0	0.05	15.12	0.00	2.253	5.12	0.00	2.3	97.7	0.0	0.73	0.65	0.85	4.23	3.2	0.003	0.51	0.0	0.04	14.47	0.00	2.621	4.40	0.88	1.3	98.7	0.0	1.95	0.86	0.64	0.85	3.89	9266	1054	8	0	76	0	0	logfile
✔	8JL4	36388	2025-05-13	2023-06-02	2.68	2.88	2.69	2.9	0.008	0.78	0.0	0.08	14.99	0.01	2.302	4.52	0.00	1.3	98.7	0.0	1.43	0.70	0.88	4.32	2.9	0.003	0.53	0.0	0.04	15.29	0.00	2.563	3.72	0.54	0.9	99.1	0.0	2.07	0.90	0.67	0.87	3.20	9588	1066	8	0	86	0	0	logfile
✔	8T13	40953	2025-05-12	2023-06-01	3.45	3.82	3.47	3.7	0.007	0.53	0.0	0.04	18.19	0.00	2.200	7.19	0.10	4.8	95.2	0.0	0.32	0.65	0.67	1.71	3.7	0.003	0.57	0.0	0.04	18.94	0.00	2.553	6.05	3.30	5.8	94.2	0.0	0.21	0.42	0.76	0.79	1.96	9304	1167	3	0	2	0	0	logfile
✔	8T15	40955	2025-05-24	2023-06-01	2.7	2.92	2.81	2.9	0.002	0.53	0.0	0.04	16.28	0.00	2.440	0.55	0.00	1.5	98.5	0.0	1.81	0.63	0.80	6.01	2.9	0.003	0.50	0.0	0.04	17.42	0.00	2.489	1.13	1.14	2.1	97.9	0.0	1.78	0.78	0.63	0.82	5.29	25656	1608	12	0	0	0	12612	logfile
✔	8T0Q	40945	2025-05-15	2023-06-01	3.06	2.84	3.09	3.3	0.008	1.06	1.0	0.28	18.27	0.01	1.734	38.90	3.74	3.9	95.8	0.3	1.56	0.86	0.86	3.43	3.3	0.005	1.17	1.0	0.10	17.43	0.00	2.316	11.01	3.43	3.3	96.6	0.1	1.22	1.55	0.85	0.86	3.07	12355	1547	8	0	6	0	0	logfile
✔	8JKD	36368	2025-05-13	2023-06-01	2.6	2.72	2.55	2.8	0.003	0.64	0.0	0.05	14.09	0.00	2.206	7.36	0.00	6.7	93.3	0.0	-0.71	0.73	0.83	3.91	2.8	0.003	0.67	0.0	0.05	16.97	0.00	2.494	5.51	1.91	6.7	93.3	0.0	-0.62	0.34	0.74	0.85	3.68	10960	1403	3	0	0	0	0	logfile
✔	8T0L	40943	2025-05-30	2023-06-01	3.62	4.00	3.72	4.0	0.005	1.03	0.0	0.04	14.81	0.00	1.577	9.55	5.67	9.9	90.0	0.1	-1.34	0.70	0.74	1.15	4.0	0.004	0.86	0.0	0.05	17.42	0.00	2.003	15.14	4.23	7.2	92.8	0.0	-1.00	1.48	0.69	0.74	1.00	33530	4152	10	46	5	0	0	logfile
✔	8T12	40952	2025-05-13	2023-06-01	3.34	3.81	3.37	3.7	0.005	0.69	0.0	0.04	17.59	0.00	2.147	9.16	0.60	5.6	94.0	0.4	0.31	0.70	0.73	1.49	3.7	0.003	0.63	0.0	0.04	18.10	0.00	2.534	5.16	2.89	4.4	95.5	0.2	0.41	1.27	0.80	0.84	1.69	10813	1343	3	0	2	0	0	logfile
✔	8JKB	36367	2025-05-18	2023-06-01	3.27	4.57	3.30	3.9	0.004	0.67	0.0	0.05	13.37	0.00	2.142	8.50	0.16	4.0	96.0	0.0	-1.95	0.84	0.71	2.10	4.0	0.004	0.82	0.0	0.04	15.52	0.00	2.459	10.45	1.98	3.3	96.7	0.0	-1.46	0.89	0.90	0.85	2.03	17169	2220	15	0	0	0	0	logfile
✔	8JKF	36371	2025-05-25	2023-06-01	2.83	2.88	2.88	2.9	0.005	0.64	0.0	0.05	12.92	0.00	2.069	4.36	0.96	4.3	95.7	0.0	-0.67	0.70	0.80	4.18	2.9	0.005	0.68	0.0	0.05	15.92	0.00	2.495	4.08	2.84	4.3	95.7	0.0	-0.58	0.53	0.74	0.85	4.30	18049	2282	12	0	0	0	0	logfile
✔	8JKH	36372	2025-05-24	2023-06-01	2.64	2.10	2.64	2.0	0.005	0.75	1.0	0.05	12.59	0.00	1.753	7.19	0.79	4.9	94.9	0.2	-1.00	0.81	0.79	4.26	1.8	0.003	0.69	0.0	0.04	16.08	0.00	2.467	4.20	3.15	5.3	94.7	0.0	-0.36	1.22	0.84	0.84	3.93	17603	2270	12	0	0	0	0	logfile
✔	8T00	40930	2025-05-24	2023-05-31	4.69	6.10	5.32	6.5	0.004	1.00	0.0	0.04	14.97	0.00	1.510	8.99	0.00	6.8	93.2	0.0	-1.13	0.75	0.76	—	6.0	0.006	0.90	0.0	0.05	15.41	0.01	1.877	31.58	0.00	7.7	92.2	0.0	-1.67	0.99	0.75	0.78	—	25215	3093	7	52	3	0	0	logfile
✔	8T02	40931	2025-05-24	2023-05-31	3.79	4.08	3.85	4.1	0.004	0.89	0.0	0.04	16.69	0.00	1.981	9.32	1.53	7.5	92.4	0.0	-1.11	0.73	0.76	1.04	4.1	0.003	0.80	0.0	0.04	18.05	0.01	2.032	12.75	2.54	5.2	94.8	0.0	-0.79	0.81	0.73	0.78	0.85	25601	3146	8	49	3	0	0	logfile
✔	8P82	17539	2025-05-24	2023-05-31	3.36	4.33	3.37	3.4	0.014	1.12	2.0	0.09	12.80	0.01	2.221	0.89	0.07	3.8	96.0	0.2	-0.97	0.84	0.70	0.97	3.4	0.003	0.67	0.0	0.04	14.80	0.00	2.472	4.04	0.61	2.7	97.3	0.0	1.52	1.81	0.85	0.70	0.89	25156	3192	4	0	6	0	0	logfile

• ← previous
• Page 220 of 680
• next →