Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T04	40934	2025-05-11	2023-05-31	2.98	3.38	3.01	3.3	0.015	1.83	0.0	0.23	16.39	0.00	2.320	2.10	0.27	5.4	94.6	0.0	-1.07	0.41	0.70	3.54	3.3	0.003	0.57	0.0	0.04	16.13	0.00	2.519	7.54	1.91	2.6	97.4	0.0	1.34	0.50	0.56	0.82	2.71	6874	852	8	0	6	0	0	logfile
✔	8T03	40933	2025-05-11	2023-05-31	2.72	3.05	2.74	3.0	0.015	1.76	0.0	0.23	17.02	0.00	2.028	3.19	1.63	4.0	96.0	0.0	-0.46	0.44	0.74	4.16	3.0	0.003	0.59	0.0	0.04	16.42	0.00	2.509	5.07	2.18	2.7	97.3	0.0	1.80	0.96	0.62	0.87	3.45	6878	852	10	0	6	4	0	logfile
✔	8T06	40936	2025-05-10	2023-05-31	3.32	3.61	3.29	3.6	0.014	1.73	0.0	0.08	13.20	0.00	2.510	0.67	0.96	3.2	96.8	0.0	-0.80	0.50	0.74	3.51	3.6	0.003	0.66	0.0	0.04	15.45	0.00	2.512	6.35	1.91	2.3	97.7	0.0	1.89	0.72	0.65	0.86	1.98	6712	852	8	0	2	0	0	logfile
✔	8JJo	36361	2025-05-09	2023-05-31	3.4	3.75	3.52	3.8	0.003	0.64	0.0	0.04	17.70	0.00	2.184	10.68	0.31	5.7	94.3	0.0	-0.11	0.40	0.71	1.06	3.8	0.003	0.58	0.0	0.04	18.19	0.00	2.600	6.90	4.33	6.2	93.8	0.0	0.84	0.36	0.36	0.73	1.25	3016	375	2	0	1	0	0	logfile
✔	8P82	17539	2025-05-24	2023-05-31	3.36	4.33	3.37	3.4	0.014	1.12	2.0	0.09	12.80	0.01	2.221	0.89	0.07	3.8	96.0	0.2	-0.97	0.84	0.70	0.97	3.4	0.003	0.67	0.0	0.04	14.80	0.00	2.472	4.04	0.61	2.7	97.3	0.0	1.52	1.81	0.85	0.70	0.89	25156	3192	4	0	6	0	0	logfile
✔	8T05	40935	2025-05-10	2023-05-31	3.22	3.71	3.26	3.7	0.015	1.85	1.0	0.26	16.96	0.01	2.120	2.80	0.93	5.9	93.9	0.2	-2.10	0.45	0.74	3.17	3.6	0.013	0.61	0.0	0.04	16.35	0.01	2.023	6.09	2.61	4.2	95.8	0.0	1.16	1.55	0.59	0.84	2.54	5104	631	6	0	6	0	0	logfile
✔	8P8A	17543	2025-05-15	2023-05-31	3.2	3.30	3.14	3.3	0.006	1.02	0.0	0.06	17.65	0.01	2.213	4.01	10.55	7.2	92.7	0.1	-3.83	0.61	0.84	3.07	3.3	0.007	0.75	0.0	0.05	16.76	0.00	2.483	4.95	4.28	7.3	92.6	0.1	-0.64	1.32	0.61	0.88	3.07	13337	1709	9	0	4	0	0	logfile
✔	8P7W	17537	2025-05-16	2023-05-31	3.04	3.33	3.03	3.4	0.004	0.72	0.0	0.04	15.99	0.00	2.206	9.76	0.45	6.1	93.9	0.0	-1.44	0.65	0.86	2.29	3.4	0.004	0.64	0.0	0.04	16.46	0.00	2.290	7.46	3.37	6.0	94.0	0.0	-0.29	0.94	0.66	0.87	2.36	14380	1852	8	0	0	0	0	logfile
✔	8JJP	36364	2025-05-12	2023-05-31	2.9	3.15	3.04	3.1	0.003	0.60	0.0	0.04	16.87	0.01	2.202	6.48	3.84	3.6	96.4	0.0	0.22	0.64	0.86	2.55	3.1	0.003	0.56	0.0	0.04	16.57	0.00	2.585	5.17	3.54	3.8	96.2	0.0	0.67	1.22	0.65	0.87	2.70	9165	1161	7	0	1	0	0	logfile
✔	8P70	17513	2025-05-10	2023-05-30	2.0	1.98	2.02	2.0	0.006	0.62	0.0	0.04	16.72	0.00	2.202	7.34	0.90	1.3	98.5	0.2	1.67	0.67	0.79	5.37	2.0	0.002	0.54	0.0	0.04	16.47	0.00	2.517	5.48	1.08	1.3	98.5	0.2	2.04	0.22	0.67	0.79	4.82	5282	630	7	0	2	154	0	logfile
✘	8P7C	17529	2025-05-16	2023-05-30	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14275	1381	12	166	8	2	0	logfile
✔	8P79	17522	2025-05-10	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.004	0.67	0.0	0.04	15.95	0.00	2.582	6.00	0.72	1.3	98.5	0.2	1.78	1.23	0.68	0.77	6.48	5256	630	6	0	1	180	0	logfile
✔	8SZL	40920	2025-05-18	2023-05-30	3.12	3.99	3.20	3.6	0.004	0.65	0.0	0.04	13.64	0.00	2.040	5.54	0.00	4.2	95.8	0.0	-0.97	0.73	0.57	2.14	3.6	0.004	0.73	0.0	0.04	15.58	0.00	2.564	8.97	0.80	5.1	94.9	0.0	0.10	2.17	0.86	0.80	1.43	15081	1960	4	0	0	0	0	logfile
✔	8JJE	36345	2025-05-10	2023-05-30	3.4	3.75	3.47	3.7	0.013	1.56	1.0	0.09	16.24	0.01	1.829	0.77	1.86	2.5	97.5	0.0	-2.00	0.70	0.83	3.16	3.7	0.003	0.64	0.0	0.04	15.62	0.00	2.251	3.69	3.30	2.8	97.2	0.0	0.58	1.36	0.72	0.82	2.65	6670	794	8	0	20	1	0	logfile
✔	8P6V	17508	2025-05-10	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.30	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.003	0.58	0.0	0.04	16.80	0.00	2.579	5.08	1.62	1.5	98.4	0.2	1.76	0.76	0.64	0.77	5.41	5243	630	7	0	2	138	0	logfile
✘	8P7B	17528	2025-05-14	2023-05-30	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12363	1142	10	161	7	2	0	logfile
✘	8P7D	17530	2025-05-13	2023-05-30	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9686	1007	6	83	4	1	0	logfile
✔	8P6Y	17511	2025-05-10	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.003	0.60	0.0	0.04	16.90	0.00	2.163	3.82	0.72	0.8	99.0	0.2	2.00	0.74	0.68	0.85	6.15	5266	630	7	0	3	158	0	logfile
✔	8P76	17519	2025-05-10	2023-05-30	2.0	1.89	2.02	2.0	0.005	0.61	0.0	0.04	16.64	0.00	2.258	6.57	0.90	1.3	98.5	0.2	1.97	0.66	0.79	5.30	2.0	0.003	0.62	0.0	0.04	16.65	0.00	2.479	5.59	0.90	1.8	98.1	0.2	1.83	0.23	0.66	0.79	5.12	5261	630	7	0	2	151	0	logfile
✔	8SZK	40919	2025-05-11	2023-05-30	3.58	2.67	3.71	2.8	0.008	1.05	0.0	0.05	17.88	0.01	2.168	18.01	0.87	8.0	91.1	0.9	-0.59	0.75	0.71	1.48	2.2	0.004	0.77	0.0	0.04	18.45	0.00	2.509	12.64	3.47	7.2	92.7	0.1	-0.27	1.38	0.74	0.74	1.22	7392	904	5	0	0	0	0	logfile

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