Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8P7C	17529	2025-05-16	2023-05-30	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14275	1381	12	166	8	2	0	logfile
✘	8P7B	17528	2025-05-14	2023-05-30	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12363	1142	10	161	7	2	0	logfile
✔	8P6Y	17511	2025-05-10	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.003	0.60	0.0	0.04	16.90	0.00	2.163	3.82	0.72	0.8	99.0	0.2	2.00	0.74	0.68	0.85	6.15	5266	630	7	0	3	158	0	logfile
✔	8SZA	40905	2025-05-10	2023-05-29	2.75	3.32	2.80	3.4	0.003	0.65	0.0	0.03	15.14	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.60	0.0	0.04	15.64	0.00	2.569	8.99	1.57	0.2	99.8	0.0	3.61	0.45	0.49	0.77	1.51	4800	606	11	0	6	0	0	logfile
✔	8JJ8	36342	2025-05-09	2023-05-29	3.2	3.51	3.43	3.5	0.005	0.90	0.0	0.05	15.21	0.00	2.107	14.28	1.86	6.7	93.3	0.0	0.54	0.51	0.75	2.04	3.5	0.003	0.63	0.0	0.04	17.00	0.00	2.511	10.51	1.86	3.8	96.2	0.0	1.84	0.49	0.44	0.74	1.45	3023	375	2	0	1	0	0	logfile
✔	8JJ0	36336	2025-05-25	2023-05-29	4.5	4.79	4.42	3.9	0.002	0.45	0.0	0.04	10.59	0.00	2.216	10.12	6.32	5.9	93.8	0.3	0.83	0.78	0.76	—	3.9	0.004	0.67	0.0	0.04	11.18	0.00	2.407	18.45	0.00	9.0	90.7	0.4	-0.44	2.26	0.79	0.81	—	27191	3463	10	0	10	0	0	logfile
✔	8JJ5	36340	2025-05-16	2023-05-29	3.5	3.74	3.51	3.7	0.021	2.21	39.0	0.19	17.07	0.02	2.397	1.75	1.22	8.9	91.0	0.1	-2.93	0.38	0.61	1.08	3.7	0.004	0.73	0.0	0.04	16.00	0.00	2.171	13.09	1.89	5.1	94.9	0.0	-0.31	1.09	0.40	0.64	0.81	13594	866	10	0	14	0	6679	logfile
✔	8SZC	40908	2025-05-21	2023-05-29	3.06	2.41	—	3.0	0.011	1.34	0.0	0.04	21.69	0.02	2.227	5.48	0.00	7.2	92.8	0.0	-0.12	0.78	0.79	2.06	3.0	0.004	0.55	0.0	0.04	18.68	0.00	2.269	9.04	1.24	6.8	93.1	0.2	0.26	0.88	0.79	0.79	1.95	20462	1235	4	0	25	0	9951	logfile
✔	8SZB	40907	2025-05-10	2023-05-29	3.07	3.36	3.01	3.5	0.003	0.51	0.0	0.03	16.77	0.00	2.154	9.22	0.37	1.5	98.5	0.0	2.06	0.49	0.73	0.50	3.5	0.003	0.57	0.0	0.04	16.71	0.00	2.377	8.44	3.33	1.5	98.5	0.0	4.22	0.94	0.51	0.79	1.48	4962	612	12	0	6	0	0	logfile
✔	8JiZ	36335	2025-05-28	2023-05-29	3.8	3.93	3.77	3.1	0.002	0.49	0.0	0.04	10.59	0.00	2.200	8.83	4.73	4.7	95.1	0.2	0.75	0.76	0.77	1.36	3.1	0.004	0.76	0.0	0.05	13.33	0.00	2.053	11.80	2.50	6.0	93.8	0.2	-0.08	1.66	0.77	0.80	1.41	31002	3950	17	0	18	0	0	logfile
✘	8JJ3	36339	2025-05-16	2023-05-29	2.6476	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14635	1560	15	0	50	265	0	logfile
✔	8SZG	40915	2025-05-18	2023-05-29	3.6	2.47	—	1.9	0.006	0.85	10.0	0.11	14.08	0.01	2.281	5.68	0.11	4.8	95.2	0.0	-0.56	0.78	0.78	2.75	1.9	0.003	0.57	0.0	0.04	15.02	0.00	2.461	4.29	1.84	3.9	96.1	0.0	0.07	0.42	0.78	0.77	2.31	17571	2237	10	0	22	1	0	logfile
✔	8SZH	40916	2025-05-19	2023-05-29	3.1	2.21	—	1.8	0.006	0.79	2.0	0.11	14.62	0.01	2.196	4.04	0.00	3.8	96.2	0.0	-0.33	0.82	0.82	2.95	1.8	0.004	0.56	0.0	0.04	15.81	0.00	2.446	2.72	1.71	3.6	96.4	0.0	-0.07	0.34	0.83	0.84	2.60	18062	2267	10	0	24	1	0	logfile
✔	8JJ1	36337	2025-05-26	2023-05-29	3.77	3.93	3.75	3.2	0.002	0.41	0.0	0.04	9.55	0.00	2.217	7.74	3.60	3.3	96.7	0.0	1.29	0.75	0.75	1.45	3.2	0.006	0.73	0.0	0.05	12.87	0.00	2.365	13.00	2.00	5.7	94.3	0.0	0.09	1.39	0.77	0.81	1.69	28026	3537	13	0	13	0	0	logfile
✔	8SZi	40917	2025-05-19	2023-05-29	3.5	2.34	—	1.9	0.008	0.97	2.0	0.12	13.69	0.01	1.971	4.45	0.05	2.7	97.3	0.0	0.27	0.78	0.78	2.50	1.8	0.002	0.54	0.0	0.04	14.97	0.00	2.301	3.46	1.02	3.0	97.0	0.0	0.78	0.57	0.79	0.78	2.19	17868	2249	10	0	18	0	0	logfile
✔	8SZF	40914	2025-05-15	2023-05-29	2.8	2.08	—	1.7	0.005	0.72	1.0	0.05	13.19	0.01	2.268	4.64	0.00	3.1	96.9	0.0	0.03	0.79	0.83	3.52	1.7	0.003	0.56	0.0	0.04	15.02	0.00	2.283	2.50	1.56	3.2	96.8	0.0	0.56	0.33	0.80	0.84	2.82	12813	1602	9	0	20	0	0	logfile
✔	8JiS	36326	2025-05-12	2023-05-27	2.46	3.46	2.49	3.2	0.009	1.20	0.0	0.08	19.44	0.01	2.266	8.79	14.75	6.9	92.2	0.9	-1.22	0.66	0.77	2.14	3.2	0.005	0.71	0.0	0.04	17.16	0.00	2.480	6.85	2.70	4.4	95.5	0.1	0.94	0.56	0.66	0.79	2.19	9158	1174	6	0	0	0	0	logfile
✔	8JiU	36328	2025-05-12	2023-05-27	2.76	3.73	2.82	3.5	0.008	1.14	4.0	0.08	18.35	0.01	2.217	11.25	15.73	6.4	92.3	1.3	-2.62	0.69	0.80	2.29	3.5	0.003	0.80	0.0	0.04	16.17	0.00	2.486	8.94	2.05	4.0	95.7	0.3	0.00	0.76	0.67	0.79	2.09	9075	1177	8	0	2	0	0	logfile
✔	8JiT	36327	2025-05-12	2023-05-27	2.91	3.75	2.95	3.5	0.006	0.79	1.0	0.05	14.72	0.00	2.204	30.83	4.69	5.5	94.0	0.5	-0.47	0.69	0.80	2.15	3.5	0.004	0.77	0.0	0.04	15.74	0.00	2.486	8.29	2.61	4.0	95.9	0.1	0.61	0.60	0.70	0.83	2.23	9193	1176	7	0	1	0	0	logfile
✔	8JiR	36325	2025-05-12	2023-05-27	2.57	3.54	2.56	3.3	0.010	1.02	3.0	0.06	15.93	0.01	1.972	12.47	6.61	7.0	92.5	0.5	-1.76	0.67	0.77	3.14	3.3	0.004	0.67	0.0	0.04	16.28	0.00	2.456	7.77	2.28	4.3	95.7	0.0	0.43	0.56	0.67	0.79	2.70	9014	1167	7	0	1	0	0	logfile

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