Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JJ1	61514	2025-07-24	2024-09-12	2.72	3.42	2.74	3.2	0.003	0.50	0.0	0.04	19.01	0.00	1.693	5.35	0.60	2.8	97.2	0.0	4.37	0.65	0.86	2.93	3.2	0.003	0.54	0.0	0.04	18.62	0.00	1.900	4.94	1.40	2.1	97.9	0.0	4.26	0.84	0.65	0.86	2.85	4842	614	4	0	8	0	0	logfile
✔	9JJ2	61515	2025-07-23	2024-09-12	3.0	3.64	2.95	3.4	0.004	0.80	0.0	0.04	17.56	0.00	2.484	9.79	1.44	2.4	97.6	0.0	2.59	0.64	0.85	2.03	3.5	0.003	0.74	0.0	0.04	17.54	0.00	2.539	9.28	5.05	2.4	97.6	0.0	2.68	0.89	0.66	0.87	1.95	3916	516	2	0	0	0	0	logfile
✔	9DM7	46999	2025-07-24	2024-09-12	3.02	3.12	3.04	3.1	0.003	0.67	0.0	0.04	12.69	0.00	1.675	7.45	0.00	6.7	93.3	0.0	-0.87	0.59	0.75	1.57	3.1	0.003	0.63	0.0	0.04	14.88	0.00	2.624	5.61	2.48	7.2	92.8	0.0	-0.52	0.36	0.60	0.78	1.40	4646	598	3	0	0	0	0	logfile
✔	9JJ3	61516	2025-07-23	2024-09-12	3.03	3.86	3.02	3.6	0.004	0.71	0.0	0.04	16.42	0.01	2.247	10.65	0.20	7.0	93.0	0.0	2.17	0.65	0.85	1.70	3.6	0.003	0.64	0.0	0.04	16.97	0.00	2.487	8.52	5.34	5.7	94.3	0.0	2.46	0.29	0.65	0.85	1.70	4586	582	2	0	0	0	0	logfile
✔	9GRC	51520	2025-07-27	2024-09-11	3.5	4.03	3.54	15.0	0.002	0.66	0.0	0.04	13.80	0.00	2.197	7.46	0.00	3.9	96.1	0.0	-1.19	0.41	0.06	0.59	9.8	0.003	0.75	0.0	0.04	16.15	0.00	2.512	13.54	1.44	6.1	93.9	0.0	-0.95	1.58	0.48	0.19	0.85	9717	1263	6	0	2	0	0	logfile
✔	9DM0	46994	2025-07-31	2024-09-11	2.9	3.19	2.98	3.2	0.005	0.82	0.0	0.05	14.13	0.01	2.184	4.33	0.00	2.6	97.4	0.0	-1.17	0.65	0.75	3.00	3.2	0.004	0.87	1.0	0.05	15.89	0.00	2.393	8.55	2.24	2.4	97.6	0.0	-0.39	0.85	0.65	0.80	2.96	13642	1691	17	0	21	0	0	logfile
✔	9DLF	46976	2025-07-24	2024-09-10	2.85	2.97	2.89	3.0	0.008	0.65	0.0	0.04	14.91	0.01	2.211	4.02	0.00	3.7	96.3	0.0	-0.12	0.64	0.83	2.64	3.0	0.003	0.56	0.0	0.04	15.88	0.01	2.450	3.18	2.09	2.8	97.2	0.0	0.65	0.30	0.65	0.86	2.07	6580	852	4	0	1	0	0	logfile
✘	9GR0	51516	2025-07-25	2024-09-10	2.61	3.37	2.64	3.2	0.003	0.53	0.0	0.05	15.36	0.00	2.191	4.16	0.00	3.8	96.2	0.0	-0.17	0.87	0.85	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7213	903	8	0	4	23	0	logfile
✔	9GQZ	51515	2025-07-25	2024-09-10	2.36	3.46	2.56	3.2	0.002	0.50	0.0	0.04	13.89	0.00	2.177	6.29	0.00	3.7	96.3	0.0	0.40	0.85	0.84	4.34	3.2	0.003	0.64	0.0	0.05	15.27	0.00	2.477	7.38	1.59	3.3	96.7	0.0	0.37	0.67	0.79	0.84	4.02	7331	914	8	0	4	17	0	logfile
✔	9JHP	61489	2025-07-26	2024-09-10	3.35	2.39	3.49	2.1	0.003	0.68	0.0	0.04	14.73	0.01	2.204	10.68	0.00	4.0	96.0	0.0	-0.79	0.75	0.74	1.77	2.1	0.003	0.65	0.0	0.04	16.09	0.00	2.385	5.75	3.48	4.2	95.8	0.0	0.11	0.47	0.75	0.75	1.63	8683	1129	5	0	0	0	0	logfile
✔	9GQY	51514	2025-07-25	2024-09-10	2.8	3.72	2.86	3.4	0.004	0.57	0.0	0.05	14.18	0.00	2.053	4.47	0.14	3.9	96.1	0.0	-0.33	0.87	0.84	3.82	3.4	0.003	0.62	0.0	0.04	15.14	0.00	2.285	5.67	1.93	3.8	96.2	0.0	0.25	0.83	0.81	0.86	3.75	7056	885	6	0	4	10	0	logfile
✔	9GQo	51510	2025-07-24	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.003	0.81	0.0	0.04	18.37	0.00	1.979	17.49	3.18	6.1	93.9	0.0	-0.88	0.59	0.82	0.81	0.34	6716	880	2	0	3	0	0	logfile
✔	9JHJ	61484	2025-07-25	2024-09-09	3.2	3.66	3.24	1.8	0.005	0.77	1.0	0.05	13.23	0.00	2.208	8.68	0.15	5.2	94.8	0.0	-0.60	0.89	0.88	2.66	1.5	0.003	0.59	0.0	0.04	14.36	0.00	2.360	6.78	1.65	4.5	95.5	0.0	0.29	0.89	0.89	0.89	2.37	7761	1105	6	0	1	0	0	logfile
✔	9DK9	46948	2025-07-25	2024-09-08	2.68	2.76	2.74	3.4	0.003	0.56	0.0	0.04	17.61	0.00	2.166	5.61	0.78	1.2	98.8	0.0	1.20	0.44	0.68	1.44	3.4	0.003	0.57	0.0	0.04	17.92	0.00	2.381	6.00	1.82	2.1	97.9	0.0	1.25	1.08	0.46	0.75	1.98	7660	517	1	0	0	0	3844	logfile
✔	9DK8	46946	2025-07-24	2024-09-08	3.3	3.83	3.42	3.8	0.003	0.56	0.0	0.04	14.36	0.00	2.207	9.10	0.00	6.4	93.6	0.0	-0.16	0.61	0.83	2.88	3.8	0.003	0.64	0.0	0.04	17.09	0.01	2.400	7.75	1.49	5.3	94.7	0.0	-0.09	0.42	0.61	0.83	2.18	6678	858	6	0	0	0	0	logfile
✔	9JH1	61469	2025-07-23	2024-09-08	3.07	3.80	3.07	3.6	0.008	1.14	0.0	0.04	18.63	0.03	2.104	17.92	1.81	6.8	93.2	0.0	-0.19	0.60	0.78	1.21	3.6	0.003	0.79	0.0	0.04	17.86	0.00	2.465	11.24	2.93	4.8	95.2	0.0	2.95	1.15	0.59	0.79	1.76	4255	525	4	0	6	0	0	logfile
✔	9DKA	46949	2025-07-25	2024-09-08	3.0	4.00	3.07	3.7	0.004	0.61	0.0	0.04	17.10	0.01	2.147	5.04	0.52	1.6	98.3	0.2	0.64	0.64	0.80	2.00	3.7	0.003	0.61	0.0	0.04	16.91	0.01	2.442	5.82	3.09	2.3	97.7	0.0	2.15	1.22	0.55	0.81	1.97	7726	517	2	0	1	0	3879	logfile
✔	9JFX	61443	2025-07-25	2024-09-05	2.87	2.19	2.93	2.0	0.005	0.76	0.0	0.05	16.45	0.01	2.245	5.82	1.52	5.0	94.6	0.4	-0.14	0.76	0.77	2.43	2.0	0.003	0.59	0.0	0.04	17.34	0.00	2.526	3.88	4.79	3.1	96.9	0.0	0.73	0.40	0.79	0.79	2.32	8154	1053	5	0	0	0	0	logfile
✔	9Dii	46906	2025-07-24	2024-09-05	4.0	4.29	4.06	4.1	0.008	0.89	0.0	0.04	27.18	0.00	2.190	46.50	0.00	0.0	0.0	0.0	—	0.83	0.84	—	4.1	0.008	0.93	0.0	0.04	26.46	0.01	2.456	30.04	0.00	0.0	0.0	0.0	—	0.93	0.84	0.85	—	3894	0	2	184	0	0	0	logfile
✔	9JFZ	61445	2025-07-25	2024-09-05	2.9	2.20	2.96	2.1	0.003	0.69	1.0	0.04	16.11	0.01	2.203	8.85	0.57	4.4	95.6	0.0	0.21	0.75	0.75	2.61	2.1	0.002	0.58	0.0	0.04	16.82	0.00	2.482	4.27	2.07	3.0	97.0	0.0	0.56	0.44	0.78	0.77	2.76	8198	1049	5	0	0	0	0	logfile

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